ClCG05G000875 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG05G000875
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CG_Chr05: 940633 .. 940899 (-)
RNA-Seq Expression	ClCG05G000875
Synteny	ClCG05G000875

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCAATGTTACTGTGCCAGCTAAATTATGGTGTGATAATCAAGCTGCACTTGCATCTAACCCAGTGTTTCAGGAAGGGACTGAACATATTGAAGTGAATTGTAATTTCATTCACGAGAAAATACAAGAAAGGTTGGTGTTCACAGGATATGTGAAGACTGGAGAACAATTTGGAGATATTCTTACCAGAGCTGTAAATGGAGCAAGAATAAGCTATCTATGCAACAAGCTGGACATGATTGACATATTTGCTCCAGCTTGA

mRNA sequence

ATGGGATTCAATGTTACTGTGCCAGCTAAATTATGGTGTGATAATCAAGCTGCACTTGCATCTAACCCAGTGTTTCAGGAAGGGACTGAACATATTGAAGTGAATTGTAATTTCATTCACGAGAAAATACAAGAAAGGTTGGTGTTCACAGGATATGTGAAGACTGGAGAACAATTTGGAGATATTCTTACCAGAGCTGTAAATGGAGCAAGAATAAGCTATCTATGCAACAAGCTGGACATGATTGACATATTTGCTCCAGCTTGA

Coding sequence (CDS)

ATGGGATTCAATGTTACTGTGCCAGCTAAATTATGGTGTGATAATCAAGCTGCACTTGCATCTAACCCAGTGTTTCAGGAAGGGACTGAACATATTGAAGTGAATTGTAATTTCATTCACGAGAAAATACAAGAAAGGTTGGTGTTCACAGGATATGTGAAGACTGGAGAACAATTTGGAGATATTCTTACCAGAGCTGTAAATGGAGCAAGAATAAGCTATCTATGCAACAAGCTGGACATGATTGACATATTTGCTCCAGCTTGA

Protein sequence

MGFNVTVPAKLWCDNQAALASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQFGDILTRAVNGARISYLCNKLDMIDIFAPA

Homology

[Close]

BLAST of ClCG05G000875 vs. NCBI nr
Match: XP_031744754.1 (uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1    MGFNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQ 60
            +GF++TVPAKLWCDNQAAL  ASNPVF E T+HIEV+C+FI EKIQ+ LV TGYVKTGEQ
Sbjct: 1258 IGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQ 1317

Query: 61   FGDILTRAVNGARISYLCNKLDMIDIFAPA 89
             GDILT+A+NG RISYLCNKL MIDIFAPA
Sbjct: 1318 LGDILTKALNGTRISYLCNKLGMIDIFAPA 1347

[Close]

BLAST of ClCG05G000875 vs. NCBI nr
Match: XP_031744758.1 (uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1   MGFNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQ 60
           +GF++TVPAKLWCDNQAAL  ASNPVF E T+HIEV+C+FI EKIQ+ LV TGYVKTGEQ
Sbjct: 881 IGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQ 940

Query: 61  FGDILTRAVNGARISYLCNKLDMIDIFAPA 89
            GDILT+A+NG RISYLCNKL MIDIFAPA
Sbjct: 941 LGDILTKALNGTRISYLCNKLGMIDIFAPA 970

[Close]

BLAST of ClCG05G000875 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1    MGFNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQ 60
            +GF++TVPAKLWCDNQAAL  ASNPVF E T+HIEV+C+FI EKIQ+ LV TGYVKTGEQ
Sbjct: 1273 IGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQ 1332

Query: 61   FGDILTRAVNGARISYLCNKLDMIDIFAPA 89
             GDILT+A+NG RISYLCNKL MIDIFAPA
Sbjct: 1333 LGDILTKALNGTRISYLCNKLGMIDIFAPA 1362

[Close]

BLAST of ClCG05G000875 vs. NCBI nr
Match: XP_031744755.1 (uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1    MGFNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQ 60
            +GF++TVPAKLWCDNQAAL  ASNPVF E T+HIEV+C+FI EKIQ+ LV TGYVKTGEQ
Sbjct: 1225 IGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQ 1284

Query: 61   FGDILTRAVNGARISYLCNKLDMIDIFAPA 89
             GDILT+A+NG RISYLCNKL MIDIFAPA
Sbjct: 1285 LGDILTKALNGTRISYLCNKLGMIDIFAPA 1314

[Close]

BLAST of ClCG05G000875 vs. NCBI nr
Match: XP_031744756.1 (uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1    MGFNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQ 60
            +GF++TVPAKLWCDNQAAL  ASNPVF E T+HIEV+C+FI EKIQ+ LV TGYVKTGEQ
Sbjct: 1087 IGFSITVPAKLWCDNQAALHIASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTGEQ 1146

Query: 61   FGDILTRAVNGARISYLCNKLDMIDIFAPA 89
             GDILT+A+NG RISYLCNKL MIDIFAPA
Sbjct: 1147 LGDILTKALNGTRISYLCNKLGMIDIFAPA 1176

[Close]

BLAST of ClCG05G000875 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-06
Identity = 24/77 (31.17%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 8    PAKLWCDNQA--ALASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQFGDILTR 67
            P K++ DNQ   ++A+NP   +  +HI++  +F  E++Q  ++   Y+ T  Q  DI T+
Sbjct: 1325 PIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTK 1384

Query: 68   AVNGARISYLCNKLDMI 83
             +  AR   L +KL ++
Sbjct: 1385 PLPAARFVELRDKLGLL 1401

[Close]

BLAST of ClCG05G000875 vs. ExPASy TrEMBL
Match: A0A5A7T406 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.4e-32
Identity = 69/88 (78.41%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 3   FNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQFG 62
           F++TVPAKLWCDNQ AL  ASNPVF E T+++EV+C+FI EKIQ+ LV TGYVKTGE+ G
Sbjct: 621 FSITVPAKLWCDNQVALHIASNPVFHEQTKNVEVDCHFIREKIQDGLVSTGYVKTGEKLG 680

Query: 63  DILTRAVNGARISYLCNKLDMIDIFAPA 89
           DILT+AVNGARISYLCNKLDMIDIFAPA
Sbjct: 681 DILTKAVNGARISYLCNKLDMIDIFAPA 708

[Close]

BLAST of ClCG05G000875 vs. ExPASy TrEMBL
Match: A0A5D3E5M8 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00270 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.4e-32
Identity = 69/88 (78.41%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 3   FNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQFG 62
           F++TVPAKLWCDNQ AL  ASNPVF E T+++EV+C+FI EKIQ+ LV TGYVKTGE+ G
Sbjct: 740 FSITVPAKLWCDNQVALHIASNPVFHEQTKNVEVDCHFIREKIQDGLVSTGYVKTGEKLG 799

Query: 63  DILTRAVNGARISYLCNKLDMIDIFAPA 89
           DILT+AVNGARISYLCNKLDMIDIFAPA
Sbjct: 800 DILTKAVNGARISYLCNKLDMIDIFAPA 827

[Close]

BLAST of ClCG05G000875 vs. ExPASy TrEMBL
Match: A0A5A7SZ99 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00090 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31
Identity = 67/88 (76.14%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 3   FNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQFG 62
           F +TVP+KLWCDNQAAL   SN VF E T+HIE++C FI EKIQ+ LV+ GYVKTGE+FG
Sbjct: 70  FRITVPSKLWCDNQAALHIVSNQVFYERTKHIELDCPFIREKIQDGLVYIGYVKTGERFG 129

Query: 63  DILTRAVNGARISYLCNKLDMIDIFAPA 89
           DILT+A+NGARISYLCNKLDMIDIFAPA
Sbjct: 130 DILTKAINGARISYLCNKLDMIDIFAPA 157

[Close]

BLAST of ClCG05G000875 vs. ExPASy TrEMBL
Match: A0A5D3E4V8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001910 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.9e-31
Identity = 71/89 (79.78%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 2   GFNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQF 61
           GFN+TVP KL CDNQAAL  ASNPVF E T+HIEV+C+FI EKIQ+ LV TGYVKT EQ 
Sbjct: 312 GFNITVPVKLRCDNQAALHTASNPVFHERTKHIEVDCHFIREKIQDGLVSTGYVKTEEQL 371

Query: 62  GDILTRAVNGARISYLCNKLDMIDIFAPA 89
            DILT+AVNGARISYLCNKLDMIDIFAPA
Sbjct: 372 EDILTKAVNGARISYLCNKLDMIDIFAPA 400

[Close]

BLAST of ClCG05G000875 vs. ExPASy TrEMBL
Match: A0A5D3CVN0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G001200 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.9e-31
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1   MGFNVTVPAKLWCDNQAAL--ASNPVFQEGTEHIEVNCNFIHEKIQERLVFTGYVKTGEQ 60
           +GF++T+PAKLWCDNQ AL  ASN VF E T++I+V+C+FIHEKIQ+++VFTGYVKTGEQ
Sbjct: 232 IGFSITMPAKLWCDNQVALHIASNLVFHEQTKNIKVDCHFIHEKIQDKIVFTGYVKTGEQ 291

Query: 61  FGDILTRAVNGARISYLCNKLDMIDIFAPA 89
            GDI T  V+GARISYLCNKL MIDIFAPA
Sbjct: 292 LGDIFTEVVDGARISYLCNKLGMIDIFAPA 321

[Close]

BLAST of ClCG05G000875 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 40.4 bits (93), Expect = 8.6e-04
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 8   PAKLWCDNQAA--LASNPVFQEGTEHIEVNCNFIHEK 43
           P  L+CDN AA  +A+N VF E T+HIE +C+ + E+
Sbjct: 518 PTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554

The following BLAST results are available for this feature:

BLAST of ClCG05G000875 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744754.1	8.3e-33	78.89	uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]	[more]
XP_031744758.1	8.3e-33	78.89	uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]	[more]
XP_031744753.1	8.3e-33	78.89	uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]	[more]
XP_031744755.1	8.3e-33	78.89	uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]	[more]
XP_031744756.1	8.3e-33	78.89	uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus] >XP_031744757....	[more]

BLAST of ClCG05G000875 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	2.4e-06	31.17	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of ClCG05G000875 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T406	4.4e-32	78.41	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 ...	[more]
A0A5D3E5M8	4.4e-32	78.41	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G0027...	[more]
A0A5A7SZ99	2.9e-31	76.14	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3E4V8	2.9e-31	79.78	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CVN0	4.9e-31	73.33	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of ClCG05G000875 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.6e-04	48.65	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11783	SULFOTRANSFERASE SULT	coord: 3..80
None	No IPR available	PANTHER	PTHR11783:SF268	SUBFAMILY NOT NAMED	coord: 3..80
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1..69 e-value: 4.20577E-22 score: 81.3605

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G000875.1	ClCG05G000875.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding