Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAATTCAACAATTTCAGTGACATGACACAACTAATGGAGATCCCACTTAGTAACGGAAGATTCACTTGGTCTAGAGAAGGAAGCGTTCCAGCTCGGTCCCTCTTGGGTAGATTCTTTATTTCTAGCAACTGGGATGATTCATTCGCTAATTCAAGAGCTACAAGACAGATGCGCACTATTTCTGGTCACTTTCCTATCTTGCTTGAAGCCGGATCTTTTGAATGGGGTCCTTCCCCATTCAGATTTTGCAACAGCTGGTTAGATTTGAAGGAGTGTTGCCATGTCATGGAAATTTCACTCGATATGGAAGAACATCAAGGGAGGGCTGGTTTTGTAATTTTTTCCAAACTCAGAAACTTAAAGGAGGCTTTAAAGAGATGGAAGCTGAACCTTGACAAAGAAAAGAAGAGGTTCGAAGAAGAGCTCCTAATGGAAATTGAGAACCGAGACCTGGAGGACGAAAATTCAGAAGAAGTTGGCACGGGAAGGGAGATCTGTCTATCACTTAAAGCAAAATTATTATCATTATACCGTATTGAAGAAAGAAACCTAATGCAGAAAAGTAAGTTGAACTGTTTGAGTTTGGGTGATGAAAATTCTAGTTTTTTCCATCGGTTTTTGTCAGCTAAGAAGAGGAGAAATTTGATTTCAGAATTGACCAATGAGGATGGAGTAGTCACATCATCCTTCAAGGAGATAGAAGAGCTAATCTTGAAATGTACGACACATTATACTTAA
mRNA sequence
ATGAGAAAATTCAACAATTTCAGTGACATGACACAACTAATGGAGATCCCACTTAGTAACGGAAGATTCACTTGGTCTAGAGAAGGAAGCGTTCCAGCTCGGTCCCTCTTGGGTAGATTCTTTATTTCTAGCAACTGGGATGATTCATTCGCTAATTCAAGAGCTACAAGACAGATGCGCACTATTTCTGGTCACTTTCCTATCTTGCTTGAAGCCGGATCTTTTGAATGGGGTCCTTCCCCATTCAGATTTTGCAACAGCTGGTTAGATTTGAAGGAGTGTTGCCATGTCATGGAAATTTCACTCGATATGGAAGAACATCAAGGGAGGGCTGGTTTTGTAATTTTTTCCAAACTCAGAAACTTAAAGGAGGCTTTAAAGAGATGGAAGCTGAACCTTGACAAAGAAAAGAAGAGGTTCGAAGAAGAGCTCCTAATGGAAATTGAGAACCGAGACCTGGAGGACGAAAATTCAGAAGAAGTTGGCACGGGAAGGGAGATCTGTCTATCACTTAAAGCAAAATTATTATCATTATACCGTATTGAAGAAAGAAACCTAATGCAGAAAAGTAAGTTGAACTGTTTGAGTTTGGGTGATGAAAATTCTAGTTTTTTCCATCGGTTTTTGTCAGCTAAGAAGAGGAGAAATTTGATTTCAGAATTGACCAATGAGGATGGAGTAGTCACATCATCCTTCAAGGAGATAGAAGAGCTAATCTTGAAATGTACGACACATTATACTTAA
Coding sequence (CDS)
ATGAGAAAATTCAACAATTTCAGTGACATGACACAACTAATGGAGATCCCACTTAGTAACGGAAGATTCACTTGGTCTAGAGAAGGAAGCGTTCCAGCTCGGTCCCTCTTGGGTAGATTCTTTATTTCTAGCAACTGGGATGATTCATTCGCTAATTCAAGAGCTACAAGACAGATGCGCACTATTTCTGGTCACTTTCCTATCTTGCTTGAAGCCGGATCTTTTGAATGGGGTCCTTCCCCATTCAGATTTTGCAACAGCTGGTTAGATTTGAAGGAGTGTTGCCATGTCATGGAAATTTCACTCGATATGGAAGAACATCAAGGGAGGGCTGGTTTTGTAATTTTTTCCAAACTCAGAAACTTAAAGGAGGCTTTAAAGAGATGGAAGCTGAACCTTGACAAAGAAAAGAAGAGGTTCGAAGAAGAGCTCCTAATGGAAATTGAGAACCGAGACCTGGAGGACGAAAATTCAGAAGAAGTTGGCACGGGAAGGGAGATCTGTCTATCACTTAAAGCAAAATTATTATCATTATACCGTATTGAAGAAAGAAACCTAATGCAGAAAAGTAAGTTGAACTGTTTGAGTTTGGGTGATGAAAATTCTAGTTTTTTCCATCGGTTTTTGTCAGCTAAGAAGAGGAGAAATTTGATTTCAGAATTGACCAATGAGGATGGAGTAGTCACATCATCCTTCAAGGAGATAGAAGAGCTAATCTTGAAATGTACGACACATTATACTTAA
Protein sequence
MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMRTISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEEHQGRAGFVIFSKLRNLKEALKRWKLNLDKEKKRFEEELLMEIENRDLEDENSEEVGTGREICLSLKAKLLSLYRIEERNLMQKSKLNCLSLGDENSSFFHRFLSAKKRRNLISELTNEDGVVTSSFKEIEELILKCTTHYT
Homology
BLAST of ClCG04G012797 vs. NCBI nr
Match:
XP_038884536.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida])
HSP 1 Score: 234.6 bits (597), Expect = 9.4e-58
Identity = 114/199 (57.29%), Postives = 152/199 (76.38%), Query Frame = 0
Query: 42 ISSNWDDSFANSRATRQMRTISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEIS 101
+S NWD+ F +SR +RQ RTIS HFP+L EAG+FEWGPSPFRFCNSWL KECC ++E S
Sbjct: 60 VSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIENS 119
Query: 102 LDMEEHQGRAGFVIFSKLRNLKEALKRWKLNLDKEKKRFEEELLMEIENRDLEDENSEEV 161
++ Q AGF ++S+LR +K+++KRW +K++K EE LL EI+ +DL+ + E
Sbjct: 120 SLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLENF 179
Query: 162 GTGREICLSLKAKLLSLYRIEERNLMQKSKLNCLSLGDENSSFFHRFLSAKKRRNLISEL 221
++ +SLKA LLSLY+ EER+L+QKSKLN L LGDEN+SFFHRFL+AK+R+NLI+EL
Sbjct: 180 SAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAEL 239
Query: 222 TNEDGVVTSSFKEIEELIL 241
NE G+ T SF+EIE +IL
Sbjct: 240 FNEQGLPTKSFREIETIIL 258
BLAST of ClCG04G012797 vs. NCBI nr
Match:
XP_038884537.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida])
HSP 1 Score: 234.6 bits (597), Expect = 9.4e-58
Identity = 114/199 (57.29%), Postives = 152/199 (76.38%), Query Frame = 0
Query: 42 ISSNWDDSFANSRATRQMRTISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEIS 101
+S NWD+ F +SR +RQ RTIS HFP+L EAG+FEWGPSPFRFCNSWL KECC ++E S
Sbjct: 60 VSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIENS 119
Query: 102 LDMEEHQGRAGFVIFSKLRNLKEALKRWKLNLDKEKKRFEEELLMEIENRDLEDENSEEV 161
++ Q AGF ++S+LR +K+++KRW +K++K EE LL EI+ +DL+ + E
Sbjct: 120 SLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLENF 179
Query: 162 GTGREICLSLKAKLLSLYRIEERNLMQKSKLNCLSLGDENSSFFHRFLSAKKRRNLISEL 221
++ +SLKA LLSLY+ EER+L+QKSKLN L LGDEN+SFFHRFL+AK+R+NLI+EL
Sbjct: 180 SAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAEL 239
Query: 222 TNEDGVVTSSFKEIEELIL 241
NE G+ T SF+EIE +IL
Sbjct: 240 FNEQGLPTKSFREIETIIL 258
BLAST of ClCG04G012797 vs. NCBI nr
Match:
XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida])
HSP 1 Score: 234.6 bits (597), Expect = 9.4e-58
Identity = 114/199 (57.29%), Postives = 152/199 (76.38%), Query Frame = 0
Query: 42 ISSNWDDSFANSRATRQMRTISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEIS 101
+S NWD+ F +SR +RQ RTIS HFP+L EAG+FEWGPSPFRFCNSWL KECC ++E S
Sbjct: 60 VSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKECCRIIENS 119
Query: 102 LDMEEHQGRAGFVIFSKLRNLKEALKRWKLNLDKEKKRFEEELLMEIENRDLEDENSEEV 161
++ Q AGF ++S+LR +K+++KRW +K++K EE LL EI+ +DL+ + E
Sbjct: 120 SLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLENF 179
Query: 162 GTGREICLSLKAKLLSLYRIEERNLMQKSKLNCLSLGDENSSFFHRFLSAKKRRNLISEL 221
++ +SLKA LLSLY+ EER+L+QKSKLN L LGDEN+SFFHRFL+AK+R+NLI+EL
Sbjct: 180 SAEEDVRVSLKADLLSLYQAEERDLIQKSKLNWLLLGDENTSFFHRFLAAKRRKNLIAEL 239
Query: 222 TNEDGVVTSSFKEIEELIL 241
NE G+ T SF+EIE +IL
Sbjct: 240 FNEQGLPTKSFREIETIIL 258
BLAST of ClCG04G012797 vs. NCBI nr
Match:
XP_038904301.1 (uncharacterized protein LOC120090656 [Benincasa hispida])
HSP 1 Score: 232.3 bits (591), Expect = 4.6e-57
Identity = 124/242 (51.24%), Postives = 165/242 (68.18%), Query Frame = 0
Query: 1 MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMR 60
M FN F + L+E PLSNG+FTWSREG V ++SLL F +SS W+D F NSR RQ R
Sbjct: 41 MNNFNKFIRLNNLLEFPLSNGQFTWSREGDVASKSLLDHFLVSSTWEDVFDNSRVARQAR 100
Query: 61 TISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEE-HQGRAGFVIFSKL 120
T+S HFP+ LEAG+FEWGPS FRFCNSWL+ KE C ++E SL +E HQ A + + L
Sbjct: 101 TMSDHFPLTLEAGAFEWGPSSFRFCNSWLNNKESCKLIEKSLKKKENHQWAA--TLSTNL 160
Query: 121 RNLKEALKRWKLNLDKEKKRFEEELLMEIENRD-LEDENSEEVGTGREICLSLKAKLLSL 180
R K ALK+W KE K EE LL E++ +D L + S ++ + SLKA LL+L
Sbjct: 161 RKTKSALKKWFHEFGKEMKLKEESLLNELQRKDSLTVDVSSQIRVD-DASYSLKADLLAL 220
Query: 181 YRIEERNLMQKSKLNCLSLGDENSSFFHRFLSAKKRRNLISELTNEDGVVTSSFKEIEEL 240
Y++EE++L+QK KL L GDEN+SFFHRFLS +KR+NL ++L N+ + T ++IE++
Sbjct: 221 YQLEEKSLIQKCKLKWLKEGDENTSFFHRFLSTRKRKNLFAKLLNDQDLPTRFTRDIEDI 279
BLAST of ClCG04G012797 vs. NCBI nr
Match:
KAA0057564.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK18285.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa])
HSP 1 Score: 171.8 bits (434), Expect = 7.4e-39
Identity = 80/139 (57.55%), Postives = 104/139 (74.82%), Query Frame = 0
Query: 1 MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMR 60
MRKF F ++L+EIPLSNG+FTWSREG +RSLL RF ++++WD+SFA++RA+R+ R
Sbjct: 1 MRKFKRFIRESKLLEIPLSNGKFTWSREGRSVSRSLLDRFLVTADWDESFADTRASRKER 60
Query: 61 TISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEEHQGRAGFVIFSKLR 120
S H PILLEAG+FEWGPSPFRFCNSWL K C ++ SL HQ GFVI+SKLR
Sbjct: 61 LTSDHCPILLEAGAFEWGPSPFRFCNSWLLDKRCWQIITNSLTSGNHQEWVGFVIYSKLR 120
Query: 121 NLKEALKRWKLNLDKEKKR 140
+LK LK W +N ++ +K+
Sbjct: 121 SLKSTLKSWHVNSERARKK 139
BLAST of ClCG04G012797 vs. ExPASy TrEMBL
Match:
A0A5A7UR38 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002280 PE=4 SV=1)
HSP 1 Score: 171.8 bits (434), Expect = 3.6e-39
Identity = 80/139 (57.55%), Postives = 104/139 (74.82%), Query Frame = 0
Query: 1 MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMR 60
MRKF F ++L+EIPLSNG+FTWSREG +RSLL RF ++++WD+SFA++RA+R+ R
Sbjct: 1 MRKFKRFIRESKLLEIPLSNGKFTWSREGRSVSRSLLDRFLVTADWDESFADTRASRKER 60
Query: 61 TISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEEHQGRAGFVIFSKLR 120
S H PILLEAG+FEWGPSPFRFCNSWL K C ++ SL HQ GFVI+SKLR
Sbjct: 61 LTSDHCPILLEAGAFEWGPSPFRFCNSWLLDKRCWQIITNSLTSGNHQEWVGFVIYSKLR 120
Query: 121 NLKEALKRWKLNLDKEKKR 140
+LK LK W +N ++ +K+
Sbjct: 121 SLKSTLKSWHVNSERARKK 139
BLAST of ClCG04G012797 vs. ExPASy TrEMBL
Match:
A0A5D3CIL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00450 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 65/110 (59.09%), Postives = 75/110 (68.18%), Query Frame = 0
Query: 1 MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMR 60
MRKFNNF D L+E+PLSNG FTWS GS+ ARSL+ RFFIS +WDD+F NSR RQ
Sbjct: 26 MRKFNNFIDKANLLEVPLSNGWFTWSCHGSLFARSLIDRFFISKDWDDAFENSRVNRQSP 85
Query: 61 TISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEEHQGR 111
S HFP++LEAGS WGPSPFRF NSW K C V++ S GR
Sbjct: 86 IFSDHFPLILEAGSISWGPSPFRFSNSWFLDKACVAVIKTSWRQSAVAGR 135
BLAST of ClCG04G012797 vs. ExPASy TrEMBL
Match:
A0A5D3BXH7 (Exodeoxyribonuclease-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00160 PE=4 SV=1)
HSP 1 Score: 137.9 bits (346), Expect = 5.8e-29
Identity = 79/207 (38.16%), Postives = 107/207 (51.69%), Query Frame = 0
Query: 1 MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMR 60
M FN + LMEIP+ NGR+TW REG ++SL RFFI+ WDD F NSR + + R
Sbjct: 285 MELFNKLIESVYLMEIPMLNGRYTWPREGGTSSKSLSNRFFINKEWDDLFKNSRVSHKAR 344
Query: 61 TISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEEHQGRAGFVIFSKLR 120
S H P+ L+AG+ WGPSPFRFCNSWL +C V+ +L +Q G
Sbjct: 345 IFSNHLPLFLKAGAIIWGPSPFRFCNSWLMNNDCNQVIADTLCSFNYQVLVG-------- 404
Query: 121 NLKEALKRWKLNLDKEKKRFEEELLMEIENRDLEDENSEEVGTGREICLSLKAKLLSLYR 180
LN+ EEL+ +L+A++LS+YR
Sbjct: 405 ----------LNV--------EELVFR---------------------SALQAEILSIYR 444
Query: 181 IEERNLMQKSKLNCLSLGDENSSFFHR 208
IE N +QKSKLN L++ DEN++ + R
Sbjct: 465 IEGHNFIQKSKLNWLAVVDENTNLYKR 444
BLAST of ClCG04G012797 vs. ExPASy TrEMBL
Match:
A0A5D3BHE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00120 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 0
Query: 1 MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMR 60
MR+FNN D + E+PL NGR TWSREGS +RSLL FFI WD+ NSR R+
Sbjct: 200 MRQFNNPIDSLNIWELPLQNGRCTWSREGSSISRSLLDPFFIDKEWDEISENSRVGRKAH 259
Query: 61 TISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEEHQGRAGFVI 116
TIS HFP+LLEAGS +WGPSPFRF NSWL EC +++ ++ AGFV+
Sbjct: 260 TISDHFPLLLEAGSIKWGPSPFRFSNSWLPFSECNRIIKEVWNITSITDWAGFVL 314
BLAST of ClCG04G012797 vs. ExPASy TrEMBL
Match:
A0A2N9HFZ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38974 PE=4 SV=1)
HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 86/248 (34.68%), Postives = 132/248 (53.23%), Query Frame = 0
Query: 1 MRKFNNFSDMTQLMEIPLSNGRFTWSREGSVPARSLLGRFFISSNWDDSFANSRATRQMR 60
M F++F L+++PL GRFTWS PA S L RF +S +WD F+ + + R
Sbjct: 1202 MWDFSDFISDQGLLDLPLVGGRFTWSSNQENPAMSRLDRFLVSPDWDTQFSTAVQSTLPR 1261
Query: 61 TISGHFPILLEAGSFEWGPSPFRFCNSWLDLKECCHVMEISLDMEEHQGRAGFVIFSKLR 120
T+S H PILL+ G G PFRF N WL + ++ + +G G ++ KL+
Sbjct: 1262 TLSDHSPILLDCGPNRGGKYPFRFENMWLKSEGFVERVKHWWESYLFEGSPGHILSKKLK 1321
Query: 121 NLKEALKRWKLNLDKEKKRFEEELLMEIENRDLEDEN---SEEVGTGREICLSLKAKLLS 180
LK L++W ++ + + EL+ EI+ D +E+ S E T RE + +L
Sbjct: 1322 ALKADLRQWNKDVFGDVGVRKGELMREIQQLDALEESRTLSVEERTSRE---DRRGELHK 1381
Query: 181 LYRIEERNLMQKSKLNCLSLGDENSSFFHRFLSAKKRRNLISELTNEDGVVTSSFKEIEE 240
+ ++E + QKS++ L GD N+ FFHR ++ +R N I L N +G VTS KE+EE
Sbjct: 1382 VMDLDEISWRQKSRVLWLKEGDRNTKFFHRMANSHRRNNFIGCL-NIEGTVTSDPKEVEE 1441
Query: 241 LILKCTTH 246
I++ H
Sbjct: 1442 GIVQYYKH 1445
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038884536.1 | 9.4e-58 | 57.29 | DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida] | [more] |
XP_038884537.1 | 9.4e-58 | 57.29 | DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida] | [more] |
XP_038884535.1 | 9.4e-58 | 57.29 | DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida] | [more] |
XP_038904301.1 | 4.6e-57 | 51.24 | uncharacterized protein LOC120090656 [Benincasa hispida] | [more] |
KAA0057564.1 | 7.4e-39 | 57.55 | Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK18285.1 Transposon... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UR38 | 3.6e-39 | 57.55 | Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5D3CIL8 | 2.6e-29 | 59.09 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BXH7 | 5.8e-29 | 38.16 | Exodeoxyribonuclease-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
A0A5D3BHE3 | 3.2e-27 | 53.91 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A2N9HFZ0 | 1.6e-26 | 34.68 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38974 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |