ClCG04G010300 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G010300
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSecoisolariciresinol dehydrogenase
LocationCG_Chr04: 25212986 .. 25216585 (+)
RNA-Seq ExpressionClCG04G010300
SyntenyClCG04G010300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGTATTCAACACTGGTAAAGGTTAACTCAGACTATTGTCTTTCCCACACTTTGGTACTTTTTGTTTTTAGTGGTGAAATATTATTCGTTTCTTTGGGAAAATTTTGGTCGTTTTAGGTCGCTTGCGGTGCAATATACTACCACGAAAACTAAGATTGTCGTTGTTTTTAGTGTACTTCGAATTATACGGTAAAGAGTAATGTAAGTTTCAAATTTGTTGATAAAAGTTATTCCCGAAAAAGAAAAAATTGATTAAAGTATTTTATTAAAAATACAAAATAGCATGGAGTGATTATTTTGGATAATCGTACAATTTACCAGAAAGCTGTTTATCCAAAGTCACCTATGTAACTATTCATTGTTTGTCTAGGAAACTACTTACTTTAAATTTTGAATTATTTTCAAATCATTTTTAATTCTTTTTTTTTTTTCTTTTCTTTTTCCTTCCAAAAACAACTTTATAAGTGTGCAAGGTCCAGATAACAGGGTGCTTAAGGTTGTTTCACTTTGTGCAGTTTATGTTTTGGTTGCTCCAAAGCATGTTGCATGTTATACTGATATAGAAAGAATGCCCAAATAAAAGCTCTCTAACTTTTCAGTGGTAGTAATGAAGTGCAATTCTATTTATTAATTTGGGAAATATGTGCATCCTAACTTTGGCATGTTTTATTCCTCAAATATTGTTTTGCTTACAGAATTGAAATTGAAGTTAATCTCTGAAAACTGAATTGTGTTCCAAGTAAGTCATGGCCACAGCAGCGTGTAGAGCTGCTCCTATTGGAAGGGCTTCTTCATCAAGGACAAAGTGCGGTGAGTGCACTGGCCGATTTGATCCCAGAGTCTCATTCCCTGTCCCAATCACGTATATGGTAGCTGCAATCCTCTGTGAGAAGAAGCCAAAATCTTCAGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAAGTAAGCTATTTCCTACCCTATTCGCATGTTCAAACAATGCTTCATTGTTAACCATTACTGGTGTATCCTCCATAAACTCCACTGAAGCATAACAATGGTGAACTATTGCTTGTGTATTGATGACCTGTTGAGGAGGAAGTAAGTTTTGTCCAGCTTCAAAAGTAAAATGGGAATTTGTTAAGTTGGTCAACTGAAATACATGTCATACCTCTCTGATCCTTTCCTTGAGGTAAGCGAAACCCTCAGGCGACAAGCTCCTGAAAGTTCCCCCAACTTTCACAGTTTCGGGAACCACATGTAAAGCTTGTCCTCCGTCAACAAATGCAACCGTCACCACCTACATTGCTGATTATTAGTTAACTACATAGTGTTTTCAAGTTGCCTTTCAGTTTATTGAGTGAACTGACCATTTTTGGGTTGTTGTTTGGACTAAAGTTCTGAATCTTGTTGAGAATATAATTATTTTATCTCATATTAGTCTGTTCTTGTGGTCTTAACAAATTAATAAGATTAGGGACTTGATTTAGATGGCGCAAAACTTACTCCGGCCTCAAGAGGATCCGTCTCACGAGATACGATCTGTTGAAGAGCCTGAATTATGAAAGCTGTTGCCAAAACTGGGTCCTTCGTCTTATGTGGGGCTGCTGCATGTCCACCCTTTCCCCGGATCAAGGCTGAAAAGTGTCCTGCTCCAGCACATACTGGACCCGGCCTAGAGGCTATGACACCGGTTGGTAAGGATGGCTGTACGTGCAATGCAAAGATTCCATCAATGTCATCAAGGGCATCTTCTTGTAGCATTTGATAAGCTCCATTACACTCTTCTCCAGGCTGGAAAACTAGCTTCACAGTTCCCTTCAAATAATAGCATATTCAAACAAACCCTGGTCAGTCTCCTCCCCATTTAACAGAATAGGGGGAAAAAAAACAGGATTTTCAATTATTTGTCTGAAAAATTTTTACCTTCAGTTTGTCTCTTTTACTCTGCAGCAACCTTGCTGCTCCTAATACCATAGCAACATGTGAATCATGACCACAGGCATGCATTTTACCTTCCACCTTGCTTTTGAATTCCCATTCTACCAGTTCCTTCAAAATTATGAAGAGAATAAACTTTATGTTAAGCTTGGAGAATCTGAAACTGCTCATTAATTGTACTCAGTTTTTGCACCACCGGGCATGATCATCTCTATTGAAATTTGAAAACAACAATTAGCAAGGTTGAACTTCAAATTTTCAAGAAGTAATAAGGAAGCCAACAAGTTTAGAGAATTAATTTATCAAAATATAAATATTTCTATATCCAGTGTCTTCTGGTTGCTTTATATTTTCCAAGGTGCTTTTTGAAAATTACTTTCTTTTATTGTCTTTGATCTGCATGCCATTTCCCGGTTCATCTTTGTCCTAAATTTTGTCATTTCATTTTCTCTATATACTAAATTTTATGCATTTTCTACAACAGCCACTCACAAATTATAGATAAAATTATACATGATATGTGTATATATTTTTTAGTTTTGAAATTTAGCTAAGGCTTCAAAATGTTATTTAATATAACCATCTTGTTTTCTTCCTTATTTTAGGCGATTTTACAAGAGAGGAATACAAATATTCTAGATTGCATTCTTGGAATTGAAAAGACAATAGACATGATTTGTGTTTATGATGCTTCACTTTGGAAAAGCATAACCAATAATCTCCACACTTGTGGCTTTCTTTTGTCAACATCATGTATGATTGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGAGAGAGATATATTTATAGATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGTAGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTGAGACCAAAAACAGGTGTAGAGGAAGAAGAAATAGAATCCCCTCTAATGGAAGCCACCACTCCAGTCTTGGCAACAGGCCATTGGTAACTGATTCCAAGCGAGTCGAGCTCAGACCTCACGAGTTGACTCGTTTTGTACTCCTCAAATCCCAGCTCTGGATACTCATGGATTCTCCTTCTAACTCCTTTTATCCATTCCATGAACTCCCTTTCCCTCGCCAAACCCAATAGATTTTGGGTCAGTGAGTGGAGCTCCGACCCATCTCCGCCGTGCTCCGCCACCAACGGTCCCCACAAGGCCATCCCAAACACCAGCATCCAACAAAATGATTGGAAGCTCATACCGCCGCCTCTCATCTCAAAAACAAAGGTTTCTGATGTGTATTTTATTTATAATATTTGATTTTTTGGGTGGTTATAAACTTATATTATAGTTATATTATAGGTGCTTTGTCAGCTGGAATGAAGAGGAGTTGACAACCAAATTGGGCTTCTTTGGGAATTTTCATATTGAGATTGAGACTATTTGGTATTCTAAAATATCCTTGTTTTTAACATCATTTTAAATGATGTTTATTTTCATTCCTTTTTTAGGGGTGAATTTCGTTTTTTCAATGCCAAATTCAAGAGAAAGAACTTTCATTGTGGAGTCCAATCATGAATTTTTCTTCTTTTATTTTTGTACATAAATTCAAATTCTCATCAAGTTTCATTGGACTTTCTTTTCTTTAATATAGTTGAGAGAAAAAG

mRNA sequence

ATGCTGTCATGGCCACAGCAGCGTGTAGAGCTGCTCCTATTGGAAGGGCTTCTTCATCAAGGACAAAGTGCGGTGAGTGCACTGGCCGATTTGATCCCAGAGTCTCATTCCCTGTCCCAATCACCTGCAATCCTCTGTGAGAAGAAGCCAAAATCTTCAGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAACGAAACCCTCAGGCGACAAGCTCCTGAAAGTTCCCCCAACTTTCACAGTTTCGGGAACCACATGTAAAGCTTGTCCTCCGTCAACAAATGCAACCGTCACCACCTACATTGCTGATTATTATGTTTTCAAGTTGCCTTTCACTGTTGCCAAAACTGGGTCCTTCGTCTTATGTGGGGCTGCTGCATGTCCACCCTTTCCCCGGATCAAGGCTGAAAAGTGTCCTGCTCCAGCACATACTGGACCCGGCCTAGAGGCTATGACACCGGTTGGTAAGGATGGCTGTACGTGCAATGCAAAGATTCCATCAATGTCATCAAGGGCATCTTCTTCATTTGATAAGCTCCATTACACTCTTCTCCAGGCTGGAAAACTAGCTTCACAGTTCCCTTCAAATAATAGCATATTCAAACAAACCCTGGCGATTTTACAAGAGAGGAATACAAATATTCTAGATTGCATTCTTGGAATTGAAAAGACAATAGACATGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTGAGACCAAAAACAGGTGTAGAGGAAGAAGAAATAGAATCCCCTCTAATGGAAGCCACCACTCCAGTCTTGGCAACAGGCCATTGGTAACTGATTCCAAGCGAGTCGAGCTCAGACCTCACGACTCTGGATACTCATGGATTCTCCTTCTAACTCCTTTTATCCATTCCATGAACTCCCTTTCCCTCGCCAAACCCAATAGATTTTGGGTCAGTGAGTGGAGCTCCGACCCATCTCCGCCGTGCTCCGCCACCAACGGTCCCCACAAGGCCATCCCAAACACCAGCATCCAACAAAATGATTGGAAGCTCATACCGCCGCCTCTCATCTCAAAAACAAAGGTGCTTTGTCAGCTGGAATGAAGAGGAGTTGACAACCAAATTGGGCTTCTTTGGGAATTTTCATATTGAGATTGAGACTATTTGGTATTCTAAAATATCCTTGTTTTTAACATCATTTTAAATGATGTTTATTTTCATTCCTTTTTTAGGGGTGAATTTCGTTTTTTCAATGCCAAATTCAAGAGAAAGAACTTTCATTGTGGAGTCCAATCATGAATTTTTCTTCTTTTATTTTTGTACATAAATTCAAATTCTCATCAAGTTTCATTGGACTTTCTTTTCTTTAATATAGTTGAGAGAAAAAG

Coding sequence (CDS)

ATGCTGTCATGGCCACAGCAGCGTGTAGAGCTGCTCCTATTGGAAGGGCTTCTTCATCAAGGACAAAGTGCGGTGAGTGCACTGGCCGATTTGATCCCAGAGTCTCATTCCCTGTCCCAATCACCTGCAATCCTCTGTGAGAAGAAGCCAAAATCTTCAGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAACGAAACCCTCAGGCGACAAGCTCCTGAAAGTTCCCCCAACTTTCACAGTTTCGGGAACCACATGTAAAGCTTGTCCTCCGTCAACAAATGCAACCGTCACCACCTACATTGCTGATTATTATGTTTTCAAGTTGCCTTTCACTGTTGCCAAAACTGGGTCCTTCGTCTTATGTGGGGCTGCTGCATGTCCACCCTTTCCCCGGATCAAGGCTGAAAAGTGTCCTGCTCCAGCACATACTGGACCCGGCCTAGAGGCTATGACACCGGTTGGTAAGGATGGCTGTACGTGCAATGCAAAGATTCCATCAATGTCATCAAGGGCATCTTCTTCATTTGATAAGCTCCATTACACTCTTCTCCAGGCTGGAAAACTAGCTTCACAGTTCCCTTCAAATAATAGCATATTCAAACAAACCCTGGCGATTTTACAAGAGAGGAATACAAATATTCTAGATTGCATTCTTGGAATTGAAAAGACAATAGACATGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTGAGACCAAAAACAGGTGTAGAGGAAGAAGAAATAGAATCCCCTCTAATGGAAGCCACCACTCCAGTCTTGGCAACAGGCCATTGGTAACTGATTCCAAGCGAGTCGAGCTCAGACCTCACGACTCTGGATACTCATGGATTCTCCTTCTAACTCCTTTTATCCATTCCATGAACTCCCTTTCCCTCGCCAAACCCAATAGATTTTGGGTCAGTGAGTGGAGCTCCGACCCATCTCCGCCGTGCTCCGCCACCAACGGTCCCCACAAGGCCATCCCAAACACCAGCATCCAACAAAATGATTGGAAGCTCATACCGCCGCCTCTCATCTCAAAAACAAAGGTGCTTTGTCAGCTGGAATGA

Protein sequence

MLSWPQQRVELLLLEGLLHQGQSAVSALADLIPESHSLSQSPAILCEKKPKSSAPMVHGRSCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTTYIADYYVFKLPFTVAKTGSFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPVGKDGCTCNAKIPSMSSRASSSFDKLHYTLLQAGKLASQFPSNNSIFKQTLAILQERNTNILDCILGIEKTIDMYLKRKGIHVCSETKNRCRGRRNRIPSNGSHHSSLGNRPLVTDSKRVELRPHDSGYSWILLLTPFIHSMNSLSLAKPNRFWVSEWSSDPSPPCSATNGPHKAIPNTSIQQNDWKLIPPPLISKTKVLCQLE
Homology
[Close]
BLAST of ClCG04G010300 vs. NCBI nr
Match: KAG7027179.1 (hypothetical protein SDJN02_11190, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.5 bits (667), Expect = 1.0e-65
Identity = 163/325 (50.15%), Postives = 181/325 (55.69%), Query Frame = 0 

Query: 43  AILCEKKPKSSAPMVHGRSCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTT 102
           AI C+KKPKSSAPMVHGRSCTLDSP                                   
Sbjct: 4   AIFCDKKPKSSAPMVHGRSCTLDSP----------------------------------- 63

Query: 103 YIADYYVFKLPFTVAKTGSFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPVGKDGC 162
                       TVA+TGSFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPV     
Sbjct: 64  ------------TVARTGSFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPV----- 123

Query: 163 TCNAKIPSMSSRASSSFDKLHYTLLQAGKLASQFPSNNSIFKQTLAILQERNTNILDCIL 222
                          + DKLHYTLL AGKL SQFPSNN+I+K+                 
Sbjct: 124 ---------------AIDKLHYTLLLAGKLTSQFPSNNNIYKE----------------- 183

Query: 223 GIEKTIDMYLKRKGIHVCSETKNRCRGRRNR----------IPSNGSHHSSLGNRPLVTD 282
                   YLKRKGIHVCS++KNR R RR R           P NGSHHSSLGNRPLVTD
Sbjct: 184 --------YLKRKGIHVCSKSKNRSRRRRRRRRRRRRRRSSSPFNGSHHSSLGNRPLVTD 220

Query: 283 SKRVELRPHDSGYSWILLLTPFIHSMNSLSLAKPNRFWVSEWSSDPSPPCSAT--NGPHK 342
           +++VELRPH+                NS SLAKP+ F VSE SS+PSPPCS +  +G H 
Sbjct: 244 AEQVELRPHE----------------NSPSLAKPSNFLVSECSSNPSPPCSTSDADGRHN 220

Query: 343 AIPNTSIQQNDWKLI--PPPLISKT 354
           A P TSIQQN+   +  PPP ISKT
Sbjct: 304 ATPKTSIQQNNLNSMPPPPPAISKT 220

[Close]
BLAST of ClCG04G010300 vs. NCBI nr
Match: KAF9664907.1 (hypothetical protein SADUNF_Sadunf16G0066700 [Salix dunnii])

HSP 1 Score: 55.8 bits (133), Expect = 8.7e-04
Identity = 43/98 (43.88%), Postives = 51/98 (52.04%), Query Frame = 0 

Query: 53  SAPMVHGR-SCTLDSPTKPSGDKLLKVPPTFTVSGTTCKACPPSTNATVTTYIADYYVFK 112
           +APM  GR S ++   T+PS   L   PP   VSG T  A P ST  T TTY A   + +
Sbjct: 8   AAPM--GRTSSSITKKTRPSVVMLRIDPPNLIVSGITFPAWPASTKPTETTYTA---IAR 67

Query: 113 LPFTVAKTGSFVLCGAAACPPFPRIKAEKCPAPAHTGP 150
           +    A+ GS V  G AACPPFP I A   P  A  GP
Sbjct: 68  MAKDAARMGSLVSWGRAACPPFPLIVAINLPEAASIGP 100

[Close]
BLAST of ClCG04G010300 vs. ExPASy TrEMBL
Match: A0A2R6QVW5 (Secoisolariciresinol dehydrogenase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc13384 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.4e-04
Identity = 32/57 (56.14%), Postives = 33/57 (57.89%), Query Frame = 0 

Query: 121 SFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPVGKDGCTCNAKIPSMSSRASS 178
           S V C  A CPPFPRI A   P PA  G GLE M PVGK G  CN K+    SRA S
Sbjct: 10  SLVSCRIATCPPFPRIVAISLPEPAIIGQGLEPMLPVGKLG-ACNPKMAWTPSRAPS 65

The following BLAST results are available for this feature:
BLAST of ClCG04G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027179.11.0e-6550.15hypothetical protein SDJN02_11190, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF9664907.18.7e-0443.88hypothetical protein SADUNF_Sadunf16G0066700 [Salix dunnii][more]
BLAST of ClCG04G010300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G010300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2R6QVW59.4e-0456.14Secoisolariciresinol dehydrogenase OS=Actinidia chinensis var. chinensis OX=1590... [more]
BLAST of ClCG04G010300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..269

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G010300.2ClCG04G010300.2mRNA