ClCG04G007905 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G007905
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr04: 22863946 .. 22866681 (+)
RNA-Seq Expression	ClCG04G007905
Synteny	ClCG04G007905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTTCTCAATACTCCAACAGCTTCTAGCTCGAAGGAGTCTGATTCGAGGGGGTTGTGGAGCTCTTTGTAGGGAACAGATGCTTTATTGCCCTAGGTCCACTCTACCTTCATGAGTGGTATTTGGAGTTATCACAACCCATTAGATTCAATAATCCCCCTTCTAATGCCAAATCAATCATGCTTCAAGTTGAAAAATCTCAGATGGTGTTCAAGGTCAGCAAATCTAGGTCTGTTGATAGGAAGATGTTGTCCCCTTGTTCATTTGAAGGTCGCTAGAAGCCGTTGGAGGAGGGGTTTTGGAAGCTTAACATTGATGCAGCTTAGTTGGAGAACTCTCAGCGTGGCAAATCCGATTGGATTATTCCGGATTGGAATGGTCACTTGATTGGTGGTAGCTTTAACTTCTCCACTTCTTGTTGGCCAGTGAAAGTTTTAGAAGCTAAGGCCATAGTTAAAGGCCTAGTGAAGGTAAGAGAGACGTGGAATGGCCGAAATTCTCCATTGGTGGTTGAGTCTAATTCCTTGGAAGCCATCAATCTTTTGAATTGTAAGGATGGTTCATGTCTTTATGGAGGATGCTGTCTTTAGCTAAGCGTGTTAATGTTTTTTCTTTTTGTAAAATTTCTAGAGAGGAAAACAAAGTTGCTCATAATCTAGCAGCGTTGGCTTCCTCTTCAGGATCTTCTGGGTTTTGGATTGAGGCCTTTCCTTCTATTGTTGTTTCCTACACTTTCAAGAGGGGTTGAGACTTTGGTTATTGGATTTTTGGGTTTATATTATTGCTTAAAAAAAAACTATTATTTTATTCATAAAGTATATTAATTATACACTATCTGTTGATAACCTATAGATTTTTTCCTAATAAAATTAGTTTAGGATTGATTATAAAATCAAACTCATTAAAAAAATTTATAAATTCTCCACCCAGTTTTGTTTTTGTTCTTCATCCATTTTAACAAACCTCAAACAGAAATTTCTCCCAACAAATTTTGCAGGAGAAATAAAATAAAGAAATGGACGCAAGTTTATGAAGAAAAACATATTTAAGGTCTAGAAAGAAAACAAGAAAAAATCTCTAATTAAATTTAAAAACAACAATGTGAGATATACATTTCATTACCTAAAGTTAACAATGGTTTTGTAATCAATTCTATTTTTCTTTCAACTAATCAATTGAAAATTGAGTGTTAAAAATAATAATGTGAGAAGTAAGTTTCCTAACCTAATATTACATTTTTTTCTTTTTTTTTTCCTATAAAATTTGTGACAGCATCAATTTCATTTTTAATTATATTATATTTATATTTATATATTTTTTTTCTTTTCTTATATACACACATGTTTCATAACTTAAAAGCTAACAACAATTTCATAAACTATTCCATTTTTCATTTTATAATTTTTATTTTATTTTTTCATCCAGACATTACATTTACTTTCAACTAATCAATTGAAAGTTGAGAGTTAAAAATAAAAATGTGAGTGAAATATGTTTCATAAATCAAAATAACATTTCTTTAATATACAATATTTGGCAATATCAAATTTTATTTTTATCGTCAAAGATTTTTTTTTTCATCCACACAATACATTTACTTTTTTATGTTTATTTTATTTTATTTTCTCAGATGTATAATACCATTTATTTTCAACCAATCAATTGAAAAATTAGAGTTTAAAATAATAATGTGACAAAGACGTTTGGAATTGGTATTTTCAAAGATTTTATATAAAAAATTGTTATTAGGTGAAAAAAAAGTTAAAGGAAAAAAAAGTGAAAAACTAGTAAAATAAATAAAGCAAAGCAAATATGGAAGAAAATTTTTCATACTTCGTAATACTAGAAATTTTCTCAAAAGCAAAACAAAAGTTTAGCATGTGAATAAAAGAACATAAAAAAGAGAAAAAAAATCGCTAAAAAAAACCAAATGAAACTTACATGTGACACCATTTGGTTGAGCCACATGGTGGGCTATAGGAGTGGACTATAACCCTACGAGCCGAGCATCCACGTTGTGCCCTTTTGCTTATGTACCAACCTTTTTTATTTGATCTCTTCCTTCTACCGTTAAAGTGCTAGTAGATGATCACGCTTAAAATAAGCCAAATTAGTACTAACCTGAAATTAAACCAACATTTTGAGAAAAAAAAAACTTTCTTTATTAATATAAATGGTAAATTTGCATTTAGCCTAGATTGATCAATAACATATTTAATACTATCTCAAACGTTTTATTCTACCTGGTAATTATTGAACTAAAATATGTAAATCCCATTTAAAATTGAGAAAAAATCATTTCTTGATTTTATTTTTAGGTATTTATAGAAGGACTATCCTATCATTATGGCAATAACAAAAAAGGGAAAGAAAAAGGTAAGGAAATGAAATTCCACGTAGGACTGTCAGTCAGTACTAAAGCTAAAGAAAGCTAACTAAAGATGGCCCCACTTCAGAATAATGAAGCGATTAACGAAGTAATTAACAAAGTAATTGTTTTAAAGCTCATAATGAAAGGGGAAAAGAAAAACTGGTAAATCTTTTTCATTTCTTCAACCCAACGATTTGGTGGGGTTTGATTCTTCTTCTTGCAATCACCATATTCGATTCCTTTTCTCTTCTTCAACTCGGATTTTTCTATAAGATTATTGGGTTTCATGTCTGTTTTTCATCAGTTTTGCACTTGGAATTGACCGGATTCCGATTGGATTTGGCTTCACGGCAAGAGTTTAA

mRNA sequence

ATGACTCTTCTCAATACTCCAACAGCTTCTAGCTCGAAGGAGTCTGATTCGAGGGGGTTGTGGAGCTCTTTATTCAATAATCCCCCTTCTAATGCCAAATCAATCATGCTTCAAGTTGAAAAATCTCAGATGGTGTTCAAGCGTGGCAAATCCGATTGGATTATTCCGGATTGGAATGGTCACTTGATTGGTGGTAGCTTTAACTTCTCCACTTCTTGTTGGCCAGTGAAAGTTTTAGAAGCTAAGGCCATAGTTAAAGGCCTAGTGAAGGTAAGAGAGACGTGGAATGGCCGAAATTCTCCATTGGTGGTTGAGTCTAATTCCTTGGAAGCCATCAATCTTTTGAATTCTCATAATGAAAGGGGAAAAGAAAAACTGGTAAATCTTTTTCATTTCTTCAACCCAACGATTTGTTTTGCACTTGGAATTGACCGGATTCCGATTGGATTTGGCTTCACGGCAAGAGTTTAA

Coding sequence (CDS)

ATGACTCTTCTCAATACTCCAACAGCTTCTAGCTCGAAGGAGTCTGATTCGAGGGGGTTGTGGAGCTCTTTATTCAATAATCCCCCTTCTAATGCCAAATCAATCATGCTTCAAGTTGAAAAATCTCAGATGGTGTTCAAGCGTGGCAAATCCGATTGGATTATTCCGGATTGGAATGGTCACTTGATTGGTGGTAGCTTTAACTTCTCCACTTCTTGTTGGCCAGTGAAAGTTTTAGAAGCTAAGGCCATAGTTAAAGGCCTAGTGAAGGTAAGAGAGACGTGGAATGGCCGAAATTCTCCATTGGTGGTTGAGTCTAATTCCTTGGAAGCCATCAATCTTTTGAATTCTCATAATGAAAGGGGAAAAGAAAAACTGGTAAATCTTTTTCATTTCTTCAACCCAACGATTTGTTTTGCACTTGGAATTGACCGGATTCCGATTGGATTTGGCTTCACGGCAAGAGTTTAA

Protein sequence

MTLLNTPTASSSKESDSRGLWSSLFNNPPSNAKSIMLQVEKSQMVFKRGKSDWIIPDWNGHLIGGSFNFSTSCWPVKVLEAKAIVKGLVKVRETWNGRNSPLVVESNSLEAINLLNSHNERGKEKLVNLFHFFNPTICFALGIDRIPIGFGFTARV

Homology

The following BLAST results are available for this feature:

BLAST of ClCG04G007905 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G007905 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G007905 vs.


Match Name	E-value	Identity	Description

BLAST of ClCG04G007905 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 48..129 e-value: 9.3E-6 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G007905.1	ClCG04G007905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity