ClCG04G006620 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G006620
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSeed maturation protein PM41
LocationCG_Chr04: 21434984 .. 21438516 (+)
RNA-Seq ExpressionClCG04G006620
SyntenyClCG04G006620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATTGGAGACCATGACAACAAAAGCAATACAAAACTAGATCATCTTAAACCTAGAGACCATTTCTTCAACATGTCGTCCCTCTTCTTTCTCTTTACTATTGCAGCCGCTTCGATTCCGACCGGCACTGTTCTCGACTTTGTTTCGAAGTCGGAAGCAGGAGGAGGAGACGATGTGATCGATTCGGGGGCATTATTGTGTCGTGGGTTTGACATGTTTACAACTGAAATGGCAAGATACAATGATATGAGGGAACTATACAACGTAGTATATAAACAAGTGAAAGGGAACGAGAACTTGGTTCTTTTTGGCCGTACAAATGTAATATAGAGATATAACGTCAACGTTGAATAATAAAGTCAACGGAATAAGGAGTCACGTTCATACAAGCAATAGCTGTTGACAGCTTATCCAATTGGTCAATTGATATACGTGGCCTCCAAAACACTTGGATAGACAAAGGCAAACTATTGGGCGGGAAGTATTGCCAACATACAATGGGCCCAGCCCAGAATCCTTTGGCCCATTTCCATTTATTTAGAATTAGAATCAAAGTCCAACAGAGTGCAATTTTGAAAAATATATAAGTTTAATCTATGATTAACAAGTTCTTAGTCGTTGAAGTGCTTAAAGGTTTTTGAAGTTTAAATTTTGTTTTTAATTGGTCTTTTGAATTTTAAAAATATCTAATAAATCTTGAGTCTAAACTTTTGAAAATTTTTAAATGAATGAATCTATTAGATATAGATTAAAAATTTTACGTTTTAAAGAAATCTAATTCATCAATAGTCCGTCTAATAAATTAATGATTTTTTTTATTAAAAAAATGAAAATTCAAAGACTTGTTTAGATACACAAACTTAAAATCTATAATCCATAACATGTTAGGAGTGAAATTAGTACACCTAAATCAATATAAAGATTATATTTGAAAATTTGGCATCCTTGATTAGCCACAACTATTCAACAATCGATATTTAAGATTCACAACAAAGATGCGAGTCAAACACGTTGAGCAATTGAAAGCCCTAGGCTAATGCTAGCCCTATGCAAATTGGAGAAGAAAGTTTCATGTGCATATTAAACAATATTTACGTTTACAAAGTTAATACAAAATTGTGGTATAACTATATAACTTAGAAAGTTTCTAGTAATTTCCCTTCTATTTATTGTGTGCCACATCAACATGCGTTTTAAAAATAGAGTGGAACCCACCTGACGTTAACAAAAAATTATGGTGTGAACAAAGTGAGTACGTTGTACTAGAAAATTTTTCGTACAATTTAGCATAAAAGTGTATTTGGGGACTGATGACACCATGCCAATGTACACATTCTCATTTTTTAGATGCAATTCCGAAATAAAACTAAGAGCATGTCTGCATTAACTTTGTTGGAGATTTGTTGACTGTCTTTATATTTTTCTAAGGCAGCTTATGGTGGTATCTGGGAAATCTCAGTATAATTATATTGATCGATATTTTCCTTTTTATGGTGGATCTTATTGTGACAAAAAAAGGAAAATATTTTTCTAGGAAATTCTTTCCTTATTTATTTATTTAAGGCAGGGTATTATGGGTCTGGCCGTTTGCATGATGTCACATAAGTTGCCTCAGCTATTGTTATAACAAGCGCAATTCTCCTATCCAAACTTTCCTTATTTGGAAAATTCAGCAAATTTTATATTCTAGATTATTTCCCTCCTTATGGCCCACCGAATTCTTTTTGGGATGTTTTACTTTTCTAAAGAAATTATTTATTCAAGATTTTGTGCCCTTGCTAGGGTTGGCCACCATTATTGAATATTTTGAAGAATTGTTATTCTAGGGTCTAGCCGCATTTTGTTCTTAGTGAGAAAGAGTTTTTGTTTTGGGTGCCGATTTGTGATTTGATCTTTGCCCACTTTATTCCATTCTGCGTATCCGTTGTTTGAATCGTTCAAGAATGTGAAGATTATTTCTGTCTTAGGGGGAGCCTAAGGCATTGTTGAAGAAAAGGAATTCTCGGTCTTAGGGGGAGCCTAGGTGCTCAGCAAGTTAGGCTCTACAAGAGTCACTGTAGAAATTGAAACTTTACAGATGAGTACTTTGTTGTAAACGTTTAACTATTCAATATTAGTGAATTATCTTTATTGGGCACACTACCCCCAAACGTAGGTGGTTTATCGCTGAATTAGGTTATCAACTCTTGTGTGAAAATTCTTTTTTGCTTCCTGTTGGTTTTGTTGGTTATTATAGTGTTTGTCTGTGCTTTCTATTTAACATCCGTATTTGAGTGACCATTCATCTGATAGCCTTTTCAAACTTAAACAATAAATATTTTTCAGAAATTTATTTTTATTTAAACACTTTTGATAGGAAGATTGTTTAAAATAAAAACACTAGTGACTTTCAAAATCAATTTTGAGCGGTTGCTAAGCATTTGTATTTCTTTTGAAAATGACTTATTTTTTAAATTAAATACTTGTGAAGGTATTCCAAACACATCTTAGGATGATAAAACAAAATTGACAACATTTTCTTAGGTGATCAAATTCCTACACCAACCACATACTCCTAAAATCAATCAAATAAATTTGTGATCAAACCTTAATCCAAAAAAAGGAAAAAATTGTAATCAAACCAAATAACAATAATAATAAGTTAAAACTAAATTTTTGTCTCTAACAAAATAACAATTTAGTTCACGAACTTTACTTTGTAGAGATTTGCTCTTTATGATTAGAAATTTATAACAATTTAGTTTTTATAGTTTCAAAATTATAACAATTTTTGTGATTAAATTTTAATAAAGATTAATTTAGTTCATATACTCTATTATTTGTAAAATAAAAATTACTATTCAAGATTTAATAAAATTTGTTGTGGACGGATATAGATTTTGATGAATATTTTTAAGGATTTGTTTATAAATTATAAAAGAGGGAATCATTACATAATAAAAATTATCCATCAATATGATGAGATTACTTTTCACAAACCAACTACATAAATCGTTACAAATTTAAAAATATAAAAGCCAGAAAATTGTTAGATGTGAGAAATGAAGTGTATCCATTAGAGAAAGCTGAAAAGACAAGAAACAGAGCAATAGCAGAGGGAGGTGGCAGCTGCAGATGAGAGAAGCAGAATTTGGGGTTCTTCAACGGCGCCACGCTTCAATTTCACTCTCTCCTTTTGCATGGCCGCCACGAACTGACTCATCTTCTTCAAATCCAAACAAACCCATCAATAAATTAAGCATTTTCCATGTCCCAATTCCCCTAAGTTAATTCTCTCTGTTTCATTAGCAATTATGTCAGGAGCTCAGGGCACGCAGCCGAAGGAGTCGTTCACCGCCACCACTTACGAGTCCGTCCCCGGCGGAGAGAACCGAACCAGGACCGATATCCGTTCACGGGAGGACGCCGGAATGATCCAGATCGATAAGCTTCAGGACAAAGTCGAAGACGCCGCCGGGAAAGGCGGTCCAGTTTTCGGGGCCGGGAAAGATGACAAGAAACAAGACCTTGGAGTTACGGGCACTGGATAG

mRNA sequence

ATGTCGATTGGAGACCATGACAACAAAAGCAATACAAAACTAGATCATCTTAAACCTAGAGACCATTTCTTCAACATGTCGTCCCTCTTCTTTCTCTTTACTATTGCAGCCGCTTCGATTCCGACCGGCACTGTTCTCGACTTTGTTTCGAAGTCGGAAGCAGGAGGAGGAGACGATGTGATCGATTCGGGGGCATTATTGTGTCGTGGGTTTGACATGTTTACAACTGAAATGGCAAGATACAATGATATGAGGGAACTATACAACGTAGTATATAAACAAGTGAAAGGGAACGAGAACTTGGTTCTTTTTGGCCGAGCTCAGGGCACGCAGCCGAAGGAGTCGTTCACCGCCACCACTTACGAGTCCGTCCCCGGCGGAGAGAACCGAACCAGGACCGATATCCGTTCACGGGAGGACGCCGGAATGATCCAGATCGATAAGCTTCAGGACAAAGTCGAAGACGCCGCCGGGAAAGGCGGTCCAGTTTTCGGGGCCGGGAAAGATGACAAGAAACAAGACCTTGGAGTTACGGGCACTGGATAG

Coding sequence (CDS)

ATGTCGATTGGAGACCATGACAACAAAAGCAATACAAAACTAGATCATCTTAAACCTAGAGACCATTTCTTCAACATGTCGTCCCTCTTCTTTCTCTTTACTATTGCAGCCGCTTCGATTCCGACCGGCACTGTTCTCGACTTTGTTTCGAAGTCGGAAGCAGGAGGAGGAGACGATGTGATCGATTCGGGGGCATTATTGTGTCGTGGGTTTGACATGTTTACAACTGAAATGGCAAGATACAATGATATGAGGGAACTATACAACGTAGTATATAAACAAGTGAAAGGGAACGAGAACTTGGTTCTTTTTGGCCGAGCTCAGGGCACGCAGCCGAAGGAGTCGTTCACCGCCACCACTTACGAGTCCGTCCCCGGCGGAGAGAACCGAACCAGGACCGATATCCGTTCACGGGAGGACGCCGGAATGATCCAGATCGATAAGCTTCAGGACAAAGTCGAAGACGCCGCCGGGAAAGGCGGTCCAGTTTTCGGGGCCGGGAAAGATGACAAGAAACAAGACCTTGGAGTTACGGGCACTGGATAG

Protein sequence

MSIGDHDNKSNTKLDHLKPRDHFFNMSSLFFLFTIAAASIPTGTVLDFVSKSEAGGGDDVIDSGALLCRGFDMFTTEMARYNDMRELYNVVYKQVKGNENLVLFGRAQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGAGKDDKKQDLGVTGTG
Homology
[Close]
BLAST of ClCG04G006620 vs. NCBI nr
Match: XP_038883613.1 (uncharacterized protein LOC120074530 [Benincasa hispida])

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-30
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPKESFTATTYESVPGGENRT+TD+RSREDAGMIQIDKLQDKV+DAAGKGGPVFGA
Sbjct: 4   AQGAQPKESFTATTYESVPGGENRTKTDLRSREDAGMIQIDKLQDKVQDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKDDKKQDLGVTGTG
Sbjct: 64  GKDDKKQDLGVTGTG 78

[Close]
BLAST of ClCG04G006620 vs. NCBI nr
Match: XP_023544782.1 (uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-30
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPK+SFTATTYESVPGGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKDDKKQDLGV+GTG
Sbjct: 64  GKDDKKQDLGVSGTG 78

[Close]
BLAST of ClCG04G006620 vs. NCBI nr
Match: XP_022949816.1 (uncharacterized protein LOC111453100 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-30
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPK+SFTATTYESVPGGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKDDKKQDLGV+GTG
Sbjct: 64  GKDDKKQDLGVSGTG 78

[Close]
BLAST of ClCG04G006620 vs. NCBI nr
Match: XP_011653711.1 (uncharacterized protein LOC101209719 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-30
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPKESFTATTYESV GGENRTRTDIRSREDAGMIQIDK+QDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKDDKKQDLGVTGTG
Sbjct: 64  GKDDKKQDLGVTGTG 78

[Close]
BLAST of ClCG04G006620 vs. NCBI nr
Match: XP_008464243.1 (PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo] >KAA0063729.1 uncharacterized protein E6C27_scaffold1290G00100 [Cucumis melo var. makuwa] >TYJ97777.1 uncharacterized protein E5676_scaffold67599G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-30
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPKESFTATTYESV GGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GK+DKKQDLGVTGTG
Sbjct: 64  GKEDKKQDLGVTGTG 78

[Close]
BLAST of ClCG04G006620 vs. ExPASy TrEMBL
Match: A0A6J1GD40 (uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC111453100 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 7.7e-31
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPK+SFTATTYESVPGGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKDDKKQDLGV+GTG
Sbjct: 64  GKDDKKQDLGVSGTG 78

[Close]
BLAST of ClCG04G006620 vs. ExPASy TrEMBL
Match: A0A0A0KY41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.0e-30
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPKESFTATTYESV GGENRTRTDIRSREDAGMIQIDK+QDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKDDKKQDLGVTGTG
Sbjct: 64  GKDDKKQDLGVTGTG 78

[Close]
BLAST of ClCG04G006620 vs. ExPASy TrEMBL
Match: A0A5D3BF74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67599G00010 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPKESFTATTYESV GGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GK+DKKQDLGVTGTG
Sbjct: 64  GKEDKKQDLGVTGTG 78

[Close]
BLAST of ClCG04G006620 vs. ExPASy TrEMBL
Match: A0A1S3CL14 (uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.7e-30
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPKESFTATTYESV GGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GK+DKKQDLGVTGTG
Sbjct: 64  GKEDKKQDLGVTGTG 78

[Close]
BLAST of ClCG04G006620 vs. ExPASy TrEMBL
Match: A0A6J1ITS5 (uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.2e-30
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG QPK+SFTATTYESVPGGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPVFGA
Sbjct: 4   AQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKD+KKQDLGV+GTG
Sbjct: 64  GKDEKKQDLGVSGTG 78

[Close]
BLAST of ClCG04G006620 vs. TAIR 10
Match: AT2G21820.1 (unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-27
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 107 AQGTQPKESFTATTYESVPGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGA 166
           AQG +P +S TATTYESV GG+N+T+ DIRS+ED G IQ+DKLQDKV DAAG GGPVFGA
Sbjct: 4   AQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPVFGA 63

Query: 167 GKDDKKQDLGVTGTG 182
           GKDDKKQDLGVTGTG
Sbjct: 64  GKDDKKQDLGVTGTG 78

The following BLAST results are available for this feature:
BLAST of ClCG04G006620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883613.11.2e-3094.67uncharacterized protein LOC120074530 [Benincasa hispida][more]
XP_023544782.11.6e-3094.67uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo][more]
XP_022949816.11.6e-3094.67uncharacterized protein LOC111453100 [Cucurbita moschata][more]
XP_011653711.12.1e-3096.00uncharacterized protein LOC101209719 [Cucumis sativus][more]
XP_008464243.13.5e-3096.00PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo] >KAA0063729.1 unc... [more]
BLAST of ClCG04G006620 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G006620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GD407.7e-3194.67uncharacterized protein LOC111453100 OS=Cucurbita moschata OX=3662 GN=LOC1114531... [more]
A0A0A0KY411.0e-3096.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1[more]
A0A5D3BF741.7e-3096.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CL141.7e-3096.00uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=... [more]
A0A6J1ITS52.2e-3093.33uncharacterized protein LOC111478345 OS=Cucurbita maxima OX=3661 GN=LOC111478345... [more]
BLAST of ClCG04G006620 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G21820.13.9e-2778.67unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..181
NoneNo IPR availablePANTHERPTHR36012:SF2OS01G0654400 PROTEINcoord: 107..181
NoneNo IPR availablePANTHERPTHR36012OS01G0654400 PROTEINcoord: 107..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G006620.2ClCG04G006620.2mRNA