ClCG04G006150 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G006150
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 20570980 .. 20571573 (-)
RNA-Seq ExpressionClCG04G006150
SyntenyClCG04G006150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGTATTCAAGATAACGAGTTGGGGAATCGGTCAGAGCATCAAAAGAATCAAAACACCCGTCTCACCATGGAAGAGACATACAGATTCATTTCTCAAAAATTGCAGCGAAAATCCCGGTAAAAGAGAAAACGACTCAAAAACAAGAGAGACTGACTAAAAAAAGCGATTTCAAGAGAAGAAACAAAAAGAAAAACAAAACCACACCACCGTTCTTTCTCCCCTCTTCTCAGTTCCAAGAAAAACAGAGCAAGACAAGCAAAATGGAACACAGAGAAGAAGAAGAAGATATGAAAAGGGGCAATAATGGCGGCGTTAAAACGGCAAATGGAGGTGGAAGAAGAGCTTGCGACAACGAACCCACAAAAGAATTGGCCAAAAAGACAGAAAGAGAGAAAGAGAAAGGAGGCCAAGAGAGAGAGAGAGCGATGAATATTTTGATTATTTGTGAACTCGGACTGAGTGACTCGGGAGAGTTGAGAGTAGCGAGTAGTGGGATGAAGAATGAAAGATCGAAGAAATTTTTTAGGAACGGCGAGACATTTTTCTTTTTACGTAAAATATCATTTAAGTCCTTATTTTGGAGTGGTAG

mRNA sequence

ATGTGGGTATTCAAGATAACGAGTTGGGGAATCGGTCAGAGCATCAAAAGAATCAAAACACCCGTCTCACCATGGAAGAGACATACAGATTCATTTCTCAAAAATTGCAGCGAAAATCCCGAGAAAACGACTCAAAAACAAGAGAGACTGACTAAAAAAAGCGATTTCAAGAGAAGAAACAAAAAGAAAAACAAAACCACACCACCGTTCTTTCTCCCCTCTTCTCAGTTCCAAGAAAAACAGAGCAAGACAAGCAAAATGGAACACAGAGAAGAAGAAGAAGATATGAAAAGGGGCAATAATGGCGGCGTTAAAACGGCAAATGGAGGTGGAAGAAGAGCTTGCGACAACGAACCCACAAAAGAATTGGCCAAAAAGACAGAAAGAGAGAAAGAGAAAGGAGGCCAAGAGAGAGAGAGAGCGATGAATATTTTGATTATTTGTGAACTCGGACTGAGTGACTCGGGAGAGTTGAGAGTAGCGAGTAGTGGGATGAAGAATGAAAGATCGAAGAAATTTTTTAGGAACGGCGAGACATTTTTCTTTTTACTCCTTATTTTGGAGTGGTAG

Coding sequence (CDS)

ATGTGGGTATTCAAGATAACGAGTTGGGGAATCGGTCAGAGCATCAAAAGAATCAAAACACCCGTCTCACCATGGAAGAGACATACAGATTCATTTCTCAAAAATTGCAGCGAAAATCCCGAGAAAACGACTCAAAAACAAGAGAGACTGACTAAAAAAAGCGATTTCAAGAGAAGAAACAAAAAGAAAAACAAAACCACACCACCGTTCTTTCTCCCCTCTTCTCAGTTCCAAGAAAAACAGAGCAAGACAAGCAAAATGGAACACAGAGAAGAAGAAGAAGATATGAAAAGGGGCAATAATGGCGGCGTTAAAACGGCAAATGGAGGTGGAAGAAGAGCTTGCGACAACGAACCCACAAAAGAATTGGCCAAAAAGACAGAAAGAGAGAAAGAGAAAGGAGGCCAAGAGAGAGAGAGAGCGATGAATATTTTGATTATTTGTGAACTCGGACTGAGTGACTCGGGAGAGTTGAGAGTAGCGAGTAGTGGGATGAAGAATGAAAGATCGAAGAAATTTTTTAGGAACGGCGAGACATTTTTCTTTTTACTCCTTATTTTGGAGTGGTAG

Protein sequence

MWVFKITSWGIGQSIKRIKTPVSPWKRHTDSFLKNCSENPEKTTQKQERLTKKSDFKRRNKKKNKTTPPFFLPSSQFQEKQSKTSKMEHREEEEDMKRGNNGGVKTANGGGRRACDNEPTKELAKKTEREKEKGGQERERAMNILIICELGLSDSGELRVASSGMKNERSKKFFRNGETFFFLLLILEW
Homology
[Close]
BLAST of ClCG04G006150 vs. NCBI nr
Match: KGN54473.1 (hypothetical protein Csa_012524 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-19
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0 

Query: 1   MWVFKITSWGIGQSIKRIKTPVSPWKRHTDSFLKNCSENP--EKTTQKQERLTKKSDFKR 60
           MWVFK TS GI +S KRIKTPVS  KRHTDSF++NC++NP  E+ T  + R  ++ + KR
Sbjct: 1   MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR 60

Query: 61  RNKKKNKTTPPFFLPSSQFQEKQSKTSKMEHREEEEDMKRGNNGGVKTANGGGRRA 115
           + K  +++    FL SS  ++KQS  SKME R EEED++RGNNGGVKTANGGGRRA
Sbjct: 61  KRKLHHRSFS--FLLSS--KKKQSNRSKMEDR-EEEDIRRGNNGGVKTANGGGRRA 111

[Close]
BLAST of ClCG04G006150 vs. ExPASy TrEMBL
Match: A0A0A0KYB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337300 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.1e-19
Identity = 68/116 (58.62%), Postives = 86/116 (74.14%), Query Frame = 0 

Query: 1   MWVFKITSWGIGQSIKRIKTPVSPWKRHTDSFLKNCSENP--EKTTQKQERLTKKSDFKR 60
           MWVFK TS GI +S KRIKTPVS  KRHTDSF++NC++NP  E+ T  + R  ++ + KR
Sbjct: 1   MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR 60

Query: 61  RNKKKNKTTPPFFLPSSQFQEKQSKTSKMEHREEEEDMKRGNNGGVKTANGGGRRA 115
           + K  +++    FL SS  ++KQS  SKME R EEED++RGNNGGVKTANGGGRRA
Sbjct: 61  KRKLHHRSFS--FLLSS--KKKQSNRSKMEDR-EEEDIRRGNNGGVKTANGGGRRA 111

The following BLAST results are available for this feature:
BLAST of ClCG04G006150 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54473.18.6e-1958.62hypothetical protein Csa_012524 [Cucumis sativus][more]
BLAST of ClCG04G006150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G006150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYB24.1e-1958.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337300 PE=4 SV=1[more]
BLAST of ClCG04G006150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G006150.1ClCG04G006150.1mRNA