ClCG04G004750 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G004750
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	proline-rich protein 2-like
Location	CG_Chr04: 17830790 .. 17831275 (-)
RNA-Seq Expression	ClCG04G004750
Synteny	ClCG04G004750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGGGAAAAGCCAATCAAGTGAGAAGAAGAAAGCAAAAAATGGTGCCTAAAAGTAAGAAAGTATTGTTTGGAATTTGTATTCTTCATTTTGTTCTTGGAGGGGAATTTACCACCAGGCAGATAGAGGCAAGAAAGATAGCAGAAGTCCATGGAAATAATGTCGATGTTCTTAGAGCTCGACCGAGGTCTAGCTAGAAGTAAACATTCCTCAGCTTCCACAAAGTAAGATCAACTTCGGAGTTTATCCCAAGGGCTTTTCTGTACCTCCACCTACCTCAATACATAACTCATCTCCTCCTCCATTTAGTAAGATTAACTTCGGAGTTTATCCCAAGGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCATCCAATAATATTAACTTTGGAGTTTATCCCAACGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCCACCAAATAA

mRNA sequence

ATGGAGGAAGGGAAAAGCCAATCAAGTGAGAAGAAGAAAGCAAAAAATGGGGAATTTACCACCAGGCAGATAGAGGCAAGAAAGATAGCAGAAGTCCATGGAAATAATGTCGATGTTCTTAGAGCTCGACCGAGTAAGATCAACTTCGGAGTTTATCCCAAGGGCTTTTCTGTACCTCCACCTACCTCAATACATAACTCATCTCCTCCTCCATTTAGTAAGATTAACTTCGGAGTTTATCCCAAGGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCATCCAATAATATTAACTTTGGAGTTTATCCCAACGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCCACCAAATAA

Coding sequence (CDS)

ATGGAGGAAGGGAAAAGCCAATCAAGTGAGAAGAAGAAAGCAAAAAATGGGGAATTTACCACCAGGCAGATAGAGGCAAGAAAGATAGCAGAAGTCCATGGAAATAATGTCGATGTTCTTAGAGCTCGACCGAGTAAGATCAACTTCGGAGTTTATCCCAAGGGCTTTTCTGTACCTCCACCTACCTCAATACATAACTCATCTCCTCCTCCATTTAGTAAGATTAACTTCGGAGTTTATCCCAAGGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCATCCAATAATATTAACTTTGGAGTTTATCCCAACGGCTTTTCTATACCTCCACCTAATCCCATACATAACTCTTCTCCTCCTCCCACCAAATAA

Protein sequence

MEEGKSQSSEKKKAKNGEFTTRQIEARKIAEVHGNNVDVLRARPSKINFGVYPKGFSVPPPTSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPNGFSIPPPNPIHNSSPPPTK

Homology

[Close]

BLAST of ClCG04G004750 vs. NCBI nr
Match: EEF52015.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 43  RPSKINFGVYPKGFSVPPPTSIHNSSPPPFSK-INFGVYPKGFSIPPPNPIHNSSPPP-- 102
           +PS +NFG+ PKG  + PP+     SPPPFSK ++FG+ PKG  IPP  P   S PPP  
Sbjct: 78  KPSNLNFGMLPKGVPI-PPSGPSRRSPPPFSKGLSFGMLPKGVPIPPSGPSRRSPPPPAL 137

Query: 103 -----SNNINFGVYPNGFSIPPPNPIHNSSPPPT 129
                + N+NFG+ P G  IPP  P   +S PP+
Sbjct: 138 TGNPFNKNLNFGMLPKGVPIPPSGPSERTSEPPS 170

[Close]

BLAST of ClCG04G004750 vs. NCBI nr
Match: EOY16631.1 (Uncharacterized protein TCM_035454 [Theobroma cacao])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 45  SKINFGVYPKGFSVPPP-----TSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSS--- 104
           S++NFGV+PKG  +PP      TS     PPP   +NFG++PKG  IPP  P   +S   
Sbjct: 32  SQLNFGVFPKGVPIPPSGPSRRTSASPPPPPPIRLLNFGMFPKGVPIPPSGPSRRTSASP 91

Query: 105 --PPPSNNINFGVYPNGFSIPPPNPIHNSS---PPPTK 130
             PPP+  +NFG +P G  IPP  P   +S   PPP K
Sbjct: 92  PPPPPTGLLNFGTFPKGVPIPPSGPSRGTSASPPPPQK 129

[Close]

BLAST of ClCG04G004750 vs. NCBI nr
Match: XP_007019406.2 (PREDICTED: formin-like protein 20 [Theobroma cacao])

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-07
Identity = 52/138 (37.68%), Postives = 67/138 (48.55%), Query Frame = 0


Query: 5   KSQSSEKKKAKNGEFTTRQIEARKIAEVHGNNVDVLRARPSKINFGVYPKGFSVPPP--- 64
           K Q  EK + K        +       + GN   V  A  S++NFGV+PKG  +PP    
Sbjct: 6   KHQEGEKMENKISMLLMVALVFLGYVSMSGNARAVPEA--SQLNFGVFPKGVPIPPSGPS 65

Query: 65  --TSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSS-----PPPSNNINFGVYPNGFSI 124
             TS     PPP   +NFG++PKG  IPP  P   +S     PPP+  +NFG +P G  I
Sbjct: 66  RRTSASPPPPPPIRLLNFGMFPKGVPIPPSGPSRRTSASPPPPPPTGLLNFGTFPKGV-I 125

Query: 125 PPPNPIHNSS---PPPTK 130
           PP  P   +S   PPP K
Sbjct: 126 PPSGPSRGTSASPPPPQK 140

[Close]

BLAST of ClCG04G004750 vs. NCBI nr
Match: XP_022967687.1 (actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-07
Identity = 46/105 (43.81%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 39  VLRARPSKINFGVYPKGFSVPPPTSIHNSS----PPP---FSKINFGVYPKGFSIPPPNP 98
           V+  + SKINFG+ PKG  +PP    H +S    PPP   + KINFG+ PK   IPP  P
Sbjct: 395 VILNKQSKINFGMLPKGVPIPPSGPSHRTSDYPPPPPHVLWPKINFGMLPKDVPIPPSGP 454

Query: 99  IHNSS---PPPSN----NINFGVYPNGFSIPPPNPIHNSS--PPP 128
              +S   PPP +     INFG+ P G  IPP  P   +S  PPP
Sbjct: 455 SQRTSDYPPPPPHVLWPKINFGMLPKGVPIPPHGPSRRTSDYPPP 499

[Close]

BLAST of ClCG04G004750 vs. NCBI nr
Match: KAG6603169.1 (hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-06
Identity = 46/105 (43.81%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 45  SKINFGVYPKGFSVPP--PTSIHNSSPPP-----------FSKINFGVYPKGFSIPPPNP 104
           SKINFG+ PKG  +PP  P+   +  PPP            SKINFG+ PKG  IPP  P
Sbjct: 242 SKINFGMLPKGVPIPPSGPSQRTSDYPPPPPHASSVILNTQSKINFGMLPKGVPIPPSGP 301

Query: 105 IHNSS---PPPSN----NINFGVYPNGFSIPPPNPIHNSS--PPP 128
              +S   PPP +     INFG+ P G  IPP  P   +S  PPP
Sbjct: 302 SQRTSNYPPPPPHVLRPKINFGMLPKGVPIPPSGPSRRTSDHPPP 346

[Close]

BLAST of ClCG04G004750 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 59  PPPTSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPN---GFSIP 118
           PPP  +H SSPPP         P  +S PPP P++ SSPPP   +++   P     +  P
Sbjct: 631 PPPPVVHYSSPPP--------PPVYYSSPPPPPVYYSSPPPPPPVHYSSPPPPEVHYHSP 690

Query: 119 PPNPIHNSSPPP 128
           PP+P+H SSPPP
Sbjct: 691 PPSPVHYSSPPP 694

[Close]

BLAST of ClCG04G004750 vs. ExPASy TrEMBL
Match: B9RB38 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1510820 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 43  RPSKINFGVYPKGFSVPPPTSIHNSSPPPFSK-INFGVYPKGFSIPPPNPIHNSSPPP-- 102
           +PS +NFG+ PKG  + PP+     SPPPFSK ++FG+ PKG  IPP  P   S PPP  
Sbjct: 78  KPSNLNFGMLPKGVPI-PPSGPSRRSPPPFSKGLSFGMLPKGVPIPPSGPSRRSPPPPAL 137

Query: 103 -----SNNINFGVYPNGFSIPPPNPIHNSSPPPT 129
                + N+NFG+ P G  IPP  P   +S PP+
Sbjct: 138 TGNPFNKNLNFGMLPKGVPIPPSGPSERTSEPPS 170

[Close]

BLAST of ClCG04G004750 vs. ExPASy TrEMBL
Match: A0A061FHV4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 45  SKINFGVYPKGFSVPPP-----TSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSS--- 104
           S++NFGV+PKG  +PP      TS     PPP   +NFG++PKG  IPP  P   +S   
Sbjct: 32  SQLNFGVFPKGVPIPPSGPSRRTSASPPPPPPIRLLNFGMFPKGVPIPPSGPSRRTSASP 91

Query: 105 --PPPSNNINFGVYPNGFSIPPPNPIHNSS---PPPTK 130
             PPP+  +NFG +P G  IPP  P   +S   PPP K
Sbjct: 92  PPPPPTGLLNFGTFPKGVPIPPSGPSRGTSASPPPPQK 129

[Close]

BLAST of ClCG04G004750 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07
Identity = 46/105 (43.81%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 39  VLRARPSKINFGVYPKGFSVPPPTSIHNSS----PPP---FSKINFGVYPKGFSIPPPNP 98
           V+  + SKINFG+ PKG  +PP    H +S    PPP   + KINFG+ PK   IPP  P
Sbjct: 395 VILNKQSKINFGMLPKGVPIPPSGPSHRTSDYPPPPPHVLWPKINFGMLPKDVPIPPSGP 454

Query: 99  IHNSS---PPPSN----NINFGVYPNGFSIPPPNPIHNSS--PPP 128
              +S   PPP +     INFG+ P G  IPP  P   +S  PPP
Sbjct: 455 SQRTSDYPPPPPHVLWPKINFGMLPKGVPIPPHGPSRRTSDYPPP 499

[Close]

BLAST of ClCG04G004750 vs. ExPASy TrEMBL
Match: A0A6A5P9E6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-05
Identity = 38/102 (37.25%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 42  ARPSKINFGVYPKGFSVPPPTSIHNSSPPP------FSKINFGVYPKGFSIPPPNPIHNS 101
           + PS I +G+  KG   PP      +S PP      FS IN+G+ PKG  +PP  P + +
Sbjct: 36  SNPSNIYYGMLVKGLPAPPSVPSKKTSLPPNSDIETFSNINYGMLPKGVPVPPSGPSNKT 95

Query: 102 SPPPS----------NNINFGVYPNGFSIPPPNPIHNSSPPP 128
           S PP           +NINFG+ P G   PP  P + +S PP
Sbjct: 96  SDPPPPPPKYDIETFSNINFGMLPKG-RTPPSGPSNKTSDPP 136

[Close]

BLAST of ClCG04G004750 vs. ExPASy TrEMBL
Match: A0A6A4PCZ2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0079321 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-05
Identity = 38/102 (37.25%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 42  ARPSKINFGVYPKGFSVPPPTSIHNSSPPP------FSKINFGVYPKGFSIPPPNPIHNS 101
           + PS I +G+  KG   PP      +S PP      FS IN+G+ PKG  +PP  P + +
Sbjct: 32  SNPSNIYYGMLVKGLPAPPSVPSKKTSLPPNSDIETFSNINYGMLPKGVPVPPSGPSNKT 91

Query: 102 SPPPS----------NNINFGVYPNGFSIPPPNPIHNSSPPP 128
           S PP           +NINFG+ P G   PP  P + +S PP
Sbjct: 92  SDPPPPPPKYDIETFSNINFGMLPKG-RTPPSGPSNKTSDPP 132

[Close]

BLAST of ClCG04G004750 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 59  PPPTSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPN---GFSIP 118
           PPP  +H SSPPP         P  +S PPP P++ SSPPP   +++   P     +  P
Sbjct: 631 PPPPVVHYSSPPP--------PPVYYSSPPPPPVYYSSPPPPPPVHYSSPPPPEVHYHSP 690

Query: 119 PPNPIHNSSPPP 128
           PP+P+H SSPPP
Sbjct: 691 PPSPVHYSSPPP 694

[Close]

BLAST of ClCG04G004750 vs. TAIR 10
Match: AT2G24980.1 (Proline-rich extensin-like family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.7e-04
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 56  FSVPPPTSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPNGFSIP 115
           +  PPP  +++S PPP+   +  VY K    PPP+ +++S PPP  + +  VY   +  P
Sbjct: 445 YKSPPPPYVYSSPPPPYYSPSPKVYYKS---PPPSYVYSSPPPPYYSPSPKVY---YKSP 504

Query: 116 PPNPIHNSSPPP 128
           PP+ +++S PPP
Sbjct: 505 PPSYVYSSPPPP 510

[Close]

BLAST of ClCG04G004750 vs. TAIR 10
Match: AT2G15880.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 5.7e-04
Identity = 27/68 (39.71%), Postives = 36/68 (52.94%), Query Frame = 0


Query: 59  PPPTSIHNSSPPPFSKINFGVYPKGFSIPPPNPIHNSSPPPSNNINFGVYPNGFSIPPPN 118
           PPP  +H  SPPP S I+    P  +S PPP P+++  PPP            +S PPP 
Sbjct: 493 PPPPPVH--SPPPPSPIHSPPPPPVYSPPPPPPVYSPPPPPP----------VYSPPPPP 548

Query: 119 PIHNSSPP 127
           P+H+  PP
Sbjct: 553 PVHSPPPP 548

The following BLAST results are available for this feature:

BLAST of ClCG04G004750 vs. NCBI nr


Match Name	E-value	Identity	Description
EEF52015.1	2.9e-10	45.74	conserved hypothetical protein [Ricinus communis]	[more]
EOY16631.1	1.1e-09	43.88	Uncharacterized protein TCM_035454 [Theobroma cacao]	[more]
XP_007019406.2	3.0e-07	37.68	PREDICTED: formin-like protein 20 [Theobroma cacao]	[more]
XP_022967687.1	5.1e-07	43.81	actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima]	[more]
KAG6603169.1	2.5e-06	43.81	hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG04G004750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0K5	2.9e-05	43.06	Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of ClCG04G004750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B9RB38	1.4e-10	45.74	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1510820 PE=4 SV=1	[more]
A0A061FHV4	5.3e-10	43.88	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_035454 PE=4 SV=1	[more]
A0A6J1HRH7	2.5e-07	43.81	actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3...	[more]
A0A6A5P9E6	8.8e-05	37.25	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1	[more]
A0A6A4PCZ2	8.8e-05	37.25	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0079321 PE=4 SV=1	[more]

BLAST of ClCG04G004750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13340.1	2.1e-06	43.06	Leucine-rich repeat (LRR) family protein	[more]
AT2G24980.1	5.7e-04	36.11	Proline-rich extensin-like family protein	[more]
AT2G15880.1	5.7e-04	39.71	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G004750.1	ClCG04G004750.1	mRNA