ClCG04G003940 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G003940
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	F-box domain-containing protein
Location	CG_Chr04: 15220276 .. 15220608 (+)
RNA-Seq Expression	ClCG04G003940
Synteny	ClCG04G003940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCCATTTTAGCTGCTAATTTCCCTTCTCTTTCTAACGTTATCGTCTCCTCTACCAACACATCATCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGTCGCCATCCCTCGTCGTCGTTGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

mRNA sequence

ATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCCATTTTAGCTGCTAATTTCCCTTCTCTTTCTAACGTTATCGTCTCCTCTACCAACACATCATCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGTCGCCATCCCTCGTCGTCGTTGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

Coding sequence (CDS)

ATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCCATTTTAGCTGCTAATTTCCCTTCTCTTTCTAACGTTATCGTCTCCTCTACCAACACATCATCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGTCGCCATCCCTCGTCGTCGTTGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

Protein sequence

MPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSSPISFRRLFNLGHIATTRRHPSSSLWLFRSLETHPFPLRPCLRRRHDLLP

Homology

[Close]

BLAST of ClCG04G003940 vs. NCBI nr
Match: KAE8649458.1 (hypothetical protein Csa_018875 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 77/109 (70.64%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 2   PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
           PWEVLLLVG FLDPKTLAMASCVCKSW IA+AS+HLWEPILA NFPSL N  VSST TS 
Sbjct: 11  PWEVLLLVGGFLDPKTLAMASCVCKSWFIALASDHLWEPILAHNFPSLLNRTVSSTTTSP 70

Query: 62  PISFRRLFNLGHIATTRRHPSSSLWLFRSLETHPFPLRPCLRRRHDLLP 111
             SF RLF LGH + T  +P   +   RSLET PF LR CLR R+DLLP
Sbjct: 71  STSFCRLFGLGHNSATHCYPPLFMASSRSLETQPFLLRHCLRHRYDLLP 119

[Close]

BLAST of ClCG04G003940 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-25
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  TS 
Sbjct: 13 PWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTSP 72

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
          P+SFRRLF LGH A  RR P+ S
Sbjct: 73 PVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of ClCG04G003940 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-25
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  TS 
Sbjct: 13 PWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTSP 72

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
          P+SFRRLF LGH A  RR P+ S
Sbjct: 73 PVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of ClCG04G003940 vs. NCBI nr
Match: KAG7027654.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-25
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  TS 
Sbjct: 13 PWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTSP 72

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
          P+SFRRLF LGH A  RR P+ S
Sbjct: 73 PVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of ClCG04G003940 vs. NCBI nr
Match: KAG6595690.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.6e-25
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVLLLV E LDP+TLA ASCVCKSWSI+MASNHLWE I +A FPSL+N+  SS  TS 
Sbjct: 13 PWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWETIFSAKFPSLTNLAASSATTSP 72

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
          P+SFRRLF LGH A  RR P+ S
Sbjct: 73 PVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of ClCG04G003940 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-07
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 3   WEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSSP 62
           WE+L LVG ++DP++LA+ASCV  +WS   +S  LW+ + A      +  I       + 
Sbjct: 55  WEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGAKPAW 114

Query: 63  ISFRRLFNLGHIATTRR 80
           +S++RL +    A  RR
Sbjct: 115 LSYKRLISEAESAAKRR 131

[Close]

BLAST of ClCG04G003940 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  TS 
Sbjct: 13 PWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTSP 72

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
          P+SFRRLF LGH A  RR P+ S
Sbjct: 73 PVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of ClCG04G003940 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.6e-25
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVLLLV E LDP+TLA ASCVCKSWSI+MASNHLWEPI +A FPSL+N+  SS   S 
Sbjct: 13 PWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSLTNLAASSATASP 72

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
          P+SF RLF LGH A  RR P+ S
Sbjct: 73 PLSFCRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of ClCG04G003940 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-23
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N + S+  +S 
Sbjct: 14 PWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LASAPTSSP 73

Query: 62 PISFRRLFNLGHIATTRRHPS 83
          P+SFRRLF LG+IA  RR P+
Sbjct: 74 PVSFRRLFGLGYIAAARRRPA 93

[Close]

BLAST of ClCG04G003940 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.8e-23
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N + S+  +S 
Sbjct: 14 PWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LASAPTSSP 73

Query: 62 PISFRRLFNLGHIATTRRHPS 83
          P+SFRRLF LG+IA  RR P+
Sbjct: 74 PVSFRRLFGLGYIAAARRRPA 93

[Close]

BLAST of ClCG04G003940 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N + ++  TS 
Sbjct: 14 PWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LATAPATSP 73

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
           +SFRRLF LG+IA  RR P+ S
Sbjct: 74 HVSFRRLFGLGYIAAARRRPAQS 95

[Close]

BLAST of ClCG04G003940 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 27/77 (35.06%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 3   WEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSSP 62
           WE+L LVG ++DP++LA+ASCV  +WS   +S  LW+ + A      +  I       + 
Sbjct: 55  WEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGAKPAW 114

Query: 63  ISFRRLFNLGHIATTRR 80
           +S++RL +    A  RR
Sbjct: 115 LSYKRLISEAESAAKRR 131

The following BLAST results are available for this feature:

BLAST of ClCG04G003940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649458.1	1.8e-32	70.64	hypothetical protein Csa_018875 [Cucumis sativus]	[more]
XP_023518459.1	2.7e-25	71.08	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]
XP_022925168.1	2.7e-25	71.08	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
KAG7027654.1	2.7e-25	71.08	putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6595690.1	3.6e-25	71.08	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of ClCG04G003940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	2.0e-07	35.06	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of ClCG04G003940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEG3	1.3e-25	71.08	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A6J1HMX9	8.6e-25	69.88	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]
A0A5D3DEJ6	2.8e-23	69.14	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	2.8e-23	69.14	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A0A0LDE5	1.0e-22	67.47	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]

BLAST of ClCG04G003940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	1.4e-08	35.06	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 1..41 e-value: 6.3E-4 score: 29.1
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 2..39 e-value: 1.3E-5 score: 24.9
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 1..41 score: 9.68293
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..39 e-value: 8.9E-9 score: 37.0
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 2..84
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 2..84
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G003940.1	ClCG04G003940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding