ClCG04G003590 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G003590
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	CCHC-type domain-containing protein
Location	CG_Chr04: 14066248 .. 14066802 (+)
RNA-Seq Expression	ClCG04G003590
Synteny	ClCG04G003590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTCAGCAAGAAATATGCTACAGCCCTGGCGAACTCAATATGCATTTTTGAAGGAGTGGGTGGAAGAGATTCAGGGCGTTTTGGGGGCGAAACTTTGAAGGTTAGAGTTAAGATGTATATTCGGCAACCTCTAAAACATGGAACAAATATCAAGCTAGGAACCAAGGCGGAGGAAAGATGGATTCCCATTACTTACGAAAAATTACCAGATTTCTGCTATATTTGCGGCAAGGTGGGTCATGTATTCCAAGAATGCGAAGAGGAGGACGATGAAAGTAAAGAGGGTCGAAAATTTGGAATATGGCTACGGGAATCTCAGAGTAGTAAGGGAGTTGTTAGGGGAAGAAGAGATATCAATTTTCAAAACCAAGGTGGAAGAGGTTGGGGAAGGGGAAGAGGGACCAGTTTCAAGAAGGAAGAAAGGAACCCAGGGAGAGCGGAAAAGCAAGCAGCAAAAACGAATCTGCCAGAAAGGGATGATGAGGAAATTGATTCCGTAAAAGGAAAAAACAAAGTGACCCAAAAACTTGATGCGCACTTTGAGTGTTAA

mRNA sequence

ATGTGTTTCAGCAAGAAATATGCTACAGCCCTGGCGAACTCAATATGCATTTTTGAAGGAGTGGGTGGAAGAGATTCAGGGCGTTTTGGGGGCGAAACTTTGAAGGTTAGAGTTAAGATGTATATTCGGCAACCTCTAAAACATGGAACAAATATCAAGCTAGGAACCAAGGCGGAGGAAAGATGGATTCCCATTACTTACGAAAAATTACCAGATTTCTGCTATATTTGCGGCAAGGTGGGTCATGTATTCCAAGAATGCGAAGAGGAGGACGATGAAAGTAAAGAGGGTCGAAAATTTGGAATATGGCTACGGGAATCTCAGAGTAGTAAGGGAGTTGTTAGGGGAAGAAGAGATATCAATTTTCAAAACCAAGGTGGAAGAGGTTGGGGAAGGGGAAGAGGGACCAGTTTCAAGAAGGAAGAAAGGAACCCAGGGAGAGCGGAAAAGCAAGCAGCAAAAACGAATCTGCCAGAAAGGGATGATGAGGAAATTGATTCCGTAAAAGGAAAAAACAAAGTGACCCAAAAACTTGATGCGCACTTTGAGTGTTAA

Coding sequence (CDS)

ATGTGTTTCAGCAAGAAATATGCTACAGCCCTGGCGAACTCAATATGCATTTTTGAAGGAGTGGGTGGAAGAGATTCAGGGCGTTTTGGGGGCGAAACTTTGAAGGTTAGAGTTAAGATGTATATTCGGCAACCTCTAAAACATGGAACAAATATCAAGCTAGGAACCAAGGCGGAGGAAAGATGGATTCCCATTACTTACGAAAAATTACCAGATTTCTGCTATATTTGCGGCAAGGTGGGTCATGTATTCCAAGAATGCGAAGAGGAGGACGATGAAAGTAAAGAGGGTCGAAAATTTGGAATATGGCTACGGGAATCTCAGAGTAGTAAGGGAGTTGTTAGGGGAAGAAGAGATATCAATTTTCAAAACCAAGGTGGAAGAGGTTGGGGAAGGGGAAGAGGGACCAGTTTCAAGAAGGAAGAAAGGAACCCAGGGAGAGCGGAAAAGCAAGCAGCAAAAACGAATCTGCCAGAAAGGGATGATGAGGAAATTGATTCCGTAAAAGGAAAAAACAAAGTGACCCAAAAACTTGATGCGCACTTTGAGTGTTAA

Protein sequence

MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRRDINFQNQGGRGWGRGRGTSFKKEERNPGRAEKQAAKTNLPERDDEEIDSVKGKNKVTQKLDAHFEC

Homology

[Close]

BLAST of ClCG04G003590 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-21
Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 45  PLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWL 104
           P  HGT  KLG  A+E+WIP++YEKLPDFCY CG+VGHV QEC+E  D+ +EG++FG+WL
Sbjct: 37  PNVHGTIKKLGVMAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWL 96

Query: 105 RESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE 143
           R+SQ+S+ + +GRR ++  Q    RG G G+G  +FK+++
Sbjct: 97  RKSQTSQSISKGRREEVRSQFTIDRGRGEGKGIEAFKRDK 136

[Close]

BLAST of ClCG04G003590 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-13
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 4   SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWI 63
           +K  A  L N+I  F  V   + G   G +L++RV + I +PL+ G  I +       WI
Sbjct: 141 NKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWI 200

Query: 64  PITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRKFGIWLRESQSSKGVVRGRR 119
           PI YE+LPDFCY CG +GH   +C+       D+S+   ++G WLR   S  G  +GR+
Sbjct: 201 PIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVGSKAGAQKGRK 259

[Close]

BLAST of ClCG04G003590 vs. NCBI nr
Match: TXG70052.1 (hypothetical protein EZV62_004987 [Acer yangbiense])

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-12
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 1   MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEE 60
           MC +++ A  LA  I     +   DS    G+ ++V+V++ I +PLK    +KLG   E 
Sbjct: 171 MCINRRTARWLAEQISAVIELPS-DSRECWGKFIRVKVQIDISKPLKRWLRLKLGKADEI 230

Query: 61  RWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR------KFGIWLRESQSSKGVV 116
             + + YE+LPDFC+ CG++GH+ +EC   D+E+K+G       +FG WL+   S +GV 
Sbjct: 231 VVVGLKYERLPDFCFACGRIGHIIKEC--VDEEAKKGALEGSPLRFGQWLKAQGSERGVP 288

[Close]

BLAST of ClCG04G003590 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-11
Identity = 55/179 (30.73%), Postives = 87/179 (48.60%), Query Frame = 0


Query: 2   CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEER 61
           C S + A  L   +   E + G  +  + G  ++VRVK+ + +PL+ G  +K  +  ++ 
Sbjct: 136 CISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKLK-NSDGKDI 195

Query: 62  WIPITYEKLPDFCYICGKVGHVFQECEEEDD--ESKEGRKFGIWLRESQSSKGVVR---- 121
           W P+ YEKLPDFCY CGK+GH  +ECE+      +    ++G WLR +   K V      
Sbjct: 196 WCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLRATLLKKSVSHPEEE 255

Query: 122 -----GRRDINFQNQGGRGWGRGRGTSFKKEER-----NPGRAEKQAAKTNLPERDDEE 165
                GR     Q  GGRG   GRG   +++E       P  + ++A +  +    +EE
Sbjct: 256 VFWRGGRFGRGHQVNGGRG---GRGDWRRRDENWRDIDGPESSHRRAVEEGVDRVPNEE 310

[Close]

BLAST of ClCG04G003590 vs. NCBI nr
Match: GER41574.1 (cellular nucleic acid-binding protein [Striga asiatica])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-11
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 19  EGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICG 78
           EG GG   GRF     +VRV + +  PLK   ++++  +A+E  I + YE+LPDFCY+CG
Sbjct: 21  EGEGGNFWGRFA----RVRVSLKLSNPLKKCVSVRVENQADEVIILLVYERLPDFCYLCG 80

Query: 79  KVGHVFQECEEEDDESKEGRKFGIWLRESQSSKG 113
           ++GHV +ECE  +  S E   FG WL+ S    G
Sbjct: 81  RIGHVLKECEATEGNS-ENLPFGSWLKASTHITG 109

[Close]

BLAST of ClCG04G003590 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 53/100 (53.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 45  PLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWL 104
           P  HGT  KLG  A+E+WIP++YEKLPDFCY CG+VGHV QEC+E  D+ +EG++FG+WL
Sbjct: 37  PNVHGTIKKLGVMAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWL 96

Query: 105 RESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE 143
           R+SQ+S+ + +GRR ++  Q    RG G G+G  +FK+++
Sbjct: 97  RKSQTSQSISKGRREEVRSQFTIDRGRGEGKGIEAFKRDK 136

[Close]

BLAST of ClCG04G003590 vs. ExPASy TrEMBL
Match: A0A0A0LNB5 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 5   KKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIP 64
           +KY  AL NSI  FE V   +  R  GE LKVR K+ ++Q L H TNIKLG  A+E+ IP
Sbjct: 31  RKYVVALTNSIDSFEEVEESELRRTYGELLKVREKIDVQQSLNHETNIKLGAMAKEKCIP 90

Query: 65  ITYEKLPDFCYICGKVGHVFQECE 89
           +TYEKL DFCY CG +GHV QECE
Sbjct: 91  VTYEKLSDFCYNCGILGHVLQECE 114

[Close]

BLAST of ClCG04G003590 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 4   SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWI 63
           +K  A  L N+I  F  V   + G   G +L++RV + I +PL+ G  I +       WI
Sbjct: 141 NKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWI 200

Query: 64  PITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRKFGIWLRESQSSKGVVRGRR 119
           PI YE+LPDFCY CG +GH   +C+       D+S+   ++G WLR   S  G  +GR+
Sbjct: 201 PIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATSEYGPWLRFVGSKAGAQKGRK 259

[Close]

BLAST of ClCG04G003590 vs. ExPASy TrEMBL
Match: A0A5C7IND1 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004987 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 1   MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEE 60
           MC +++ A  LA  I     +   DS    G+ ++V+V++ I +PLK    +KLG   E 
Sbjct: 171 MCINRRTARWLAEQISAVIELPS-DSRECWGKFIRVKVQIDISKPLKRWLRLKLGKADEI 230

Query: 61  RWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR------KFGIWLRESQSSKGVV 116
             + + YE+LPDFC+ CG++GH+ +EC   D+E+K+G       +FG WL+   S +GV 
Sbjct: 231 VVVGLKYERLPDFCFACGRIGHIIKEC--VDEEAKKGALEGSPLRFGQWLKAQGSERGVP 288

[Close]

BLAST of ClCG04G003590 vs. ExPASy TrEMBL
Match: A0A5A7Q953 (Cellular nucleic acid-binding protein OS=Striga asiatica OX=4170 GN=STAS_18290 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-12
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 19  EGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICG 78
           EG GG   GRF     +VRV + +  PLK   ++++  +A+E  I + YE+LPDFCY+CG
Sbjct: 21  EGEGGNFWGRFA----RVRVSLKLSNPLKKCVSVRVENQADEVIILLVYERLPDFCYLCG 80

Query: 79  KVGHVFQECEEEDDESKEGRKFGIWLRESQSSKG 113
           ++GHV +ECE  +  S E   FG WL+ S    G
Sbjct: 81  RIGHVLKECEATEGNS-ENLPFGSWLKASTHITG 109

The following BLAST results are available for this feature:

BLAST of ClCG04G003590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046998.1	2.3e-21	53.00	reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta...	[more]
XP_022156185.1	3.1e-13	36.97	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
TXG70052.1	4.4e-12	36.36	hypothetical protein EZV62_004987 [Acer yangbiense]	[more]
XP_022149484.1	1.3e-11	30.73	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
GER41574.1	1.3e-11	42.55	cellular nucleic acid-binding protein [Striga asiatica]	[more]

BLAST of ClCG04G003590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G003590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0K2	1.1e-21	53.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68...	[more]
A0A0A0LNB5	2.6e-18	58.33	CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 P...	[more]
A0A6J1DU55	1.5e-13	36.97	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5C7IND1	2.1e-12	36.36	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00498...	[more]
A0A5A7Q953	6.2e-12	42.55	Cellular nucleic acid-binding protein OS=Striga asiatica OX=4170 GN=STAS_18290 P...	[more]

BLAST of ClCG04G003590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 42..88 e-value: 9.1E-14 score: 50.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..173
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 74..89 score: 9.48789

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G003590.1	ClCG04G003590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding