ClCG04G002225 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G002225
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Exosome complex component RRP42-like
Location	CG_Chr04: 7339864 .. 7352396 (-)
RNA-Seq Expression	ClCG04G002225
Synteny	ClCG04G002225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGTGTAAAACGATATTGGGCCTTAGTTTATTGAAAAAAAATATATATTTTAATAAAATAACCTAATTGTTTAGCTTTAAGTCACCAGCCGCAAGCCCCTTCTACTCCGTTTTCATCTTCTCGACCGCATGCGCCAGCTGAAGTAGGTTCTCTTCCACCTCCGTCCGCCACACGCTCGCGCCGTAGGCTGTCGCCGCTCTTCTCCGTTAACGCCGTGGTCGTGGGTTTGTTTGTCAGTCTGTCTGTCTCTCTCACACGCGAACAGAAGGGAAGGGAGCCTCACCGCCGTCGCCCACCTCGCACCACCTCCGTTCGCCGTCTGCAGCCTGCGCCGCTGGTCGCCGTCCAGTCGTCGTCAGTGCTGTCCGTTTGCCAGAGTACCTCGACCGTAGCCTAGTTGATAGGTATGTATTTGAGTTTTCTTGATTTATGTTGAATACCCATTAAGATTTGGCCTATAATGGACCAGTCTTGGTGTTTCGAGATCAGATTTGGAGTTTGGATGGGTTTTAGGCTGCTGTCCAACAAGGCAATGGATATTTGATTACATATCGGTTAGTGTCTTGGTTCCGAATTCCTGGTTAGTCTTGATATGGCTGCTGAAATTTTGATCTATAAACCTTCAATACCACGTTTTTGCTTAGATTCAGATTGATTAGCGGAGGAATTAAGGTGTTTTGGATCAAGGAACTGTTGGACAAGCATTTCGAAGCTCAATTTGAGGTAAGTGGTTTCCTGACGACGATGAATTTAGATCTATCTGTTTGTGCATGACACATAACTAATTTTCGACTTAGTGTCGATAGGATGCTTTATTGCAACACTGTTGTATGTTGATAATTGCTATGAAACACGTTCGGTGCATTGGCATTTTGTGTGATGTGAATGTGCATGACACGACCCCTCCCCTGAGTTGTGAGATATGTATATCAATCTGTGTGATATGTCTATGTGACTACTAGTTATATCTCATGAGCTGCAATGAGTTATGTACACCAATCTATGTTATATGTTTGTGTGACCAAGTCTTATAACTCATTGGTGACAAACAGTACAATGATGGTCTAAATAGTTTGGAAAGTTATATATTTGTGTAATAACTTCAAAATATTGCAATATTTTATTTAAAAAAGGAGATATTTTGGTCAAATCACAAGTTGCCATGTCATCACAACGAAACCTTTAGTCCTTTGTGAACATTATTGATTGGATCGACCCAAATAATTGAAGTCATTCAGGTCCAAAGTCTTATACAATTGAAGCTCAATGTGAAATTTTGAGCTAAAAAAGATATTGGGCCTAGGCCTAGGCCCATGTAACACCCATGGTCTTACGCTTTCATTTGGAGAGGTTGGAAGCATCGACAACGAGGTATTGAAGCTCTAAAGATAGTCCTGATCGACCTCAAGATTACAACTTCCTAACTATGGGAAGAACTGAGGCCCTAAAAACTGAAGCTCCAAAGTTTTGAAGATCCAAAGGCCGAAGCTTTAAAGACTTGAAGAACACAACTCCCTCAAGCTTTGAAAATTGAAGCTTTGAATAATGCAAACCTCTTGAAGCTTTGATCTAAAGAATAAAGCTCAAAGGGACTTCCAAAAGATCATAAGTCTTTCTTTGAAGCTCTTGAAGTCAGAAACTCCAAAGATCGATCAACAAGCCAAAGGTTGATTCAAACGATCAACAAGCTAAAGGCCGATCCAAACGATCAACAAGCCAGAGGTTGATCCAAACCTATCACTAAACTAAAGGTTGATCTAAGAAGATCAACAAGCTCAAATGCTGGTTATCCCAGAAGATCGTCAAGTCCAAAGGCCGATCATCTAAGAAGATCAACAAGCCTAAGGATTAAAGTTTACTTTTTGAGAGAAAGAATCAAAGGATCAAATATTAAAGATTGTATTCACGACATTGAAATCAATACAAATTCAAATTCAACAAATTAAATTTCTTCGGAAATCTCGTTGAATAGATTGACACGCCCAGTGGGATCTCTCTACCTTTCATCTCTTTCTCTTATATAAGATCAAATGACATCTAAAGATAATGTATTCAAAATTTCAAGTGATGCTTACCCAGGGCCAATTACTCGTGGTCGCTCCAAGGAGATCCAATAATTTAGAGAGGAGCAAGTCTCTGACATGACAAAGAATATATGGGAGCACATGATGAAATCAACAAAAAGTGGGGTTGTCATTAAGGAGAATCCCTTACTAATCAAGGCAATTGAAGAGAGAGATTATGAAAACGTGTCTCTAAAGAATCACATTGAAAGATATGATGCTGCTGAATCAAGCCAAACACCTGCTGTCAAGGATAACGACAGAGAAAAGACAATCTTGCAAGAAAGTCAACGACAACAATCAACTTCAATTACATCGTTCTCAGTACAACAATTGCAAGATATGATCACAAACTCCATCAGAACTCAATATGGTGGTCCTTCTGAAAGTTCTTTTGTATTCTAAACCATATACAAAGAGAATTGATAATTTTAACTATGCCTATTGGATACCAGCCACCTAAGTTCCAGCAATTTGATAGGAAGGGCAATCCAAAGCAACTTGTTGCTCATTTCATCGAAACATGTGAAAATGTTGGTACGCGAGGGGACTCATTGGTCAAACGATTTGTTCGAATGTTGAATAAACGCTTTTGACTGGTACACCGATTTAGAGTTTGAGTCAATTGATAGTTGGGAACAACTCGAAAGAGAGTTTTTAAATCACTTCTACAGCACATGACGAATAGTCAGTATGTTTGAGCTCACCAACCCTAAGTAATGAAAAGGCAAACCCGTCATTGACTATATAAATCACTAGAGAGTTGCAAGTCTAGATTGCAAAGATCGTCTCACTGAATTGTCTGCCGTACATTCAAGGCATGCATTGGGGACTTCTTTACATTCTCTAGGGTATAAAGTCTCGCACCTATTTTTTAAGAACTAGCAACTTGCACTCATGATATGAAGTTAAGTATTGCTAATTGAAGAGACAAAAACATTTTAGTTCCGAACATAAAATATGAAGAAAAGCTTGCCAATGTGACTTTAGAAGCATTTGTGGTTGTCAATTCAACCCTTCTTAAGTCGTCTTTCAAAGAAAATGATAAAAAGATTGAAAAGTGACAAGAATATGGAAAGGCGTCGACTAACTTTGAAAGAAATGCAATAAAAAGTTTACCCCTTTTCCTGATTCTGACATTCCTGATATGTTAGAAATACTGAATGTGCGACTGATTCAACTTTTTGACTCTAAACGACCGAAAGAGGTGCAAAAAGTTGGTGATCCGAACTATTATAAGTACCATCAAGACATCAATCATCCAGTGAAAAATGCTTTGTTCGAAAAGAGCTATTTTATAATTAGCTCAACAAGGAAAAATTGGGCTAGATTTTGATTAAGCAGCTCAATTAAATCATATTGCAGTAACAACGAGTAAATGCAGTCAAATATGTTATAGCCAACTCCATCATCAAAAAGTGTGCTTGCTCTAATTTGGAACCTTGGAACTTATATATGTTTAGTTTCTGGGCTCTATATGGCCCAAGGCAGCGATCAAATTTTGATGTGGCGAACTCTGCATCTCCAAAGTCTAATGTGGCTGGTTCGGCCTCATCTCTAAAGTCTAATGTGGCGAGTTCTGCATCTCCAAAGTCTAATTTGGCTGGATCTGTCGCATCTTCAAAGCTCAGCTCAATGGCGTATCTGCCACATCTTCAAGATCAAGCTCAAGCTCGGTGCGCTCCATCTCCAAGCTCAAGCTCATGCGCTCCATCTCCAAGTTCAAGCTTGGTGTGGTCCATCTCCAAGTTCAAGCTTGATTCTCATTTTAAGCTTATGCATCCTAGTAGCCTAGGGCTTGTAAAAAAGTGGGGGAAAGTTATTAAAAAATTGATGATTAAACAAAAAAGGAAAATTACAGCTTAAAAAAAGTGAATTTCCAAAAATGTTAGATTCAATTCCCCGCCTAAATTTGGTTTGTTTCGAAGGAGAGAAAACAAAATAAGTTAGAAAAAGGAAAAAAATTAAAAAAAAAGGTAAAAAAAGCCAAAAAAGAGGAAAAAAAACAAGAGTTAAGTAAAAAAAGGGAAAAAAAAGGAGAGAAAAGAAGGAAGCAGAAAGTAGAAAAAGAAAAAGAGGAAAAAAAGGAAAACCCTAGAATCTTCTTCCTCAATTTTTTTCCTCTCTAATCCTTCCCTCTCAAATTTCTCTCTCTCTATCAACTTACTCCCTCTCTCACTCATACTCAATGATTGCAAGGATTCGGCGCCCACCATTATCTGCGTCAGAAGGCACAGGCAATGGTGGCATACTCAATGCTAATGGCATCTAGCAGCATGGACCAGAAATTCCGGCTGGGACCCCAATGGCCGCAGTGGACCAATGAAGTAGGTGACTTAGCGACGATGCTCTTCAACACAAACGCTAGCCACAACTCACGACAATAGTTCTGGCAACCAATTGGAATGCAACAAGTACTCTTCTGCAACTTGTACAGGCTGATGATGATGATGTAGCCTTCGATGACAAGTAGCAGGTAGCAAACAACGATGGTAGATGCGAACCAAACTCATCGGTAACTCTGATCGCAATCAACAATCAAAAATTGGCAATCAACAACTAGTTGAAAAGAACCAATGTTTTTAAATGAAGACACATGCCCATATATATATACAGAGAATTTTGAACGTATTTGAGGAAATTTTGGATCAAATAAGAATCTCACCATTTAAATTTGGTGAAATTTCATCTCAATTCAAATGTGAGAATCTTGACCCAAATTTGATAAAATCTCATATCAAACCAAATTAGATTTACCTTGAAATTCTATTCCAAATCAAGGTTAGAATCTAGGAAATTTTCAAATTTTGCATCAAATTAAAATTTGAGGTACTCCAAATTTCCTCCAAAATTTGGGTGTTTCTACTTAAAATACAAGTTCTAAAATCAAATTTCAGGGTGAAGATTGTGATTCTAATTATGTCAAATGCTGGCAAAATTCAAAATCTCAATGGGGGAGATCCTATTTTTGATTTACTGCCGGTCTGAAGGGGAAAATTCAAATCATGCCATTAACAAATTGGATTGCAGATCATCAAAATTAGAATAAATTCAAATTAAATCCAAAGTTAACTCAAATATTGGTATATTCCAAATTTTTATGGTGCTTTAATTCAAATCCAAAAGTATTTTTGGATTGAATTCAAATTATATTAGAAATCAAATCCTTCAACTCCAAATTTGATCACAAACAAAAGTTTGGTCATGTTCCAAACTTTCAAATAAGTTTGTGGTACATTTAAATTCTACCTCAAATTACTAAATATGGGCATAATTCAAATTTTCATCCCAAACCAAAATTTTGTATTGAATTCAATTAAATCCTTCCAAATCAAAATTTTATCTGATCCCAAATTGTACCCCCGAGTCAAAGGTGGAGTGAATTAAAATTATATTCCAAGTTCAAGCCCAGATTCAAGTACCAACACAATTTTACCCTAATGTCAAAACTTTGGCATAATTTAAGTGTTGCTTCACAAAATTAAAATTATATTCCAAGTTTACCTCAAATTCAAATATGTGCACACTCAAAGCATTCACCAAATCGAAGTTGAAGTAAAGAGAAAGAGGAAGTCAAAATCCTACTCCAAAGTCACATCAAGAATTTAATATATTCCAAATCTTAAAAATAATATTGATTTAATTTGGAATACTACTCAACATTCAATTTGCAATTAGGGTGGAGCATAAATATTCTACTTTAGTTCAAATAAAAGTTTACTCCCAAATAAGGAAGTCAATTTTGACTAAAACTTATCTTCTATTTGGCATAAAATGTGTTAAAGCAAACAAAATTCAAATCAAAAGTTAATGTGTTAAAGAAAACAAAATTCAAATCAAAAGTTTGAGTTAAATTCATATTTTTGATCAAAATGATGCATAAAAAGGAGTCAAAATCATACTTTGATTTCAAATTATCTTTTTCGAGATTCACCCACCGTATAAACGTGCATAAATCTCGAAAAGGGGGGCATTTGTTGAAGGAGAAATTTCGGCCAATCACAAGTAGCCACGTCATCATAACGAAAGCCTTAGTCCTTCATGAAAATGATCGATTGGATCGGGCCAAATAATTATAGTCAGGTCCAAAGTCCTATATAGTTTAAGCCCATTGTGAAATTTTGGGCCAAAAAAGATATTGGGCCTAGGCCCATGTAAGGCCCATGGAAATCCTCCATAAATAGAGGTCTTACCCCTTCATTTGGAAAGGTTGGAAGCATTGACAGCAGGGTGCTGAAGCTCTAAAGATCAAGACTCTGAAGTTCTGATCGACCTCAAGATTTCAATTTCCTGAATATGGGAAGAACTAAGACTCTGAAGCTCTAAAGACTGAAGCTCCAAGGCTTTGAAGATCCAAAGGCCGAAGCTCGATTACAACTTCTTGAATATGGGAAGAACTAAGACTCTGAAGTTCTGAAGATTGAAGCTCCAAGGCTTTGAAGATCCAGAGGCGAAGCTCTAAAGATCTGAAGAACACAACTCTCTCAAGCTCTAAAGATCTGAAGAATACAGGCTCTGAAAATTGAAGCTCTGGAAGATACAAACCTCTTGAAGCTTTGAAGATAAAAAAGACAAAATCTAATCCAAATTGATCAACAAGCCAGAGGCTTATCCAAGCTGATCAACAAGCTAGTGGGCGGTCCAAGCCGATCAATAAGCCAAAGGCCGATCTAAGAAGATTATTAGCAAAAGTCGACCCAAGAAGATCATCAAGTTAAAAGTCAGTCATTCAAGAAAATCAACAAGCCCAAAGGCATCCAAGAAGATCATCAAGTCCAAAGGCCGATCATCCAAGAAAATCAACAAGCTAAGGATTAAAGTTTACTTTTTGAGGGAAAGAATCAAAGGATCAAATTGTTAGGTCCCTAGTTAGATAAATAATAGGATTATTAGGGGAATATTAGTATGATTAGTAGTAAGGGGTATAAGGGTAATTAGATAGGAAGTTAGTTACTGAATATTGCTCTAAATAGAAGGAGAGGGGTTGGAGAAAGGTGTGAAGAATTTTATGTGGGATTTCCTAATTGGGAATTTGGAGAGGATGCTTAGTCCTCTAGAATGTGTTGAGGTATATTGTAATTTCTTCATTGATATTGCAATATAATTCTACCTTTTGGCTTTCTTGTTTAGTTCTTTGTGTTCTTGAGTTTTCTTGTATTAGAGATTGTATTCACAACACTGAAATCAATATAAATACAAATTCAATTTTAACGAATTAAATTTCTTCGGAAATCTCGTCGAACAGTTTAATCTTCTTATTTCTTTAAAATATGTTTTTAAAAGAAATTATTTTTTGAAAAGTCCTTCTGTTTAGGATTTGTCTTTCCGATGGCTCTTGGACTTGGTCTCTCTCGAACTCACTCCAAGGGTGAACGCTGCAGGCCTCTTGGTGGTGAAGACCCCAAAGTTCGCTGCAGACCTGCTGCCGTCTGGTCCCAACGCCTACATTTGAGTTGTGCCGTTAGTAACAATTACCTTATCTTTTTCTTCTTCTTAGTCTTCAATCTCTGTTTATGCTAAAACCCCAATTCCATCCAACCCAACCTGAAATTTGCAAAAACATTGTCAATCAAAACCTCGTCTGGGTTTAATTTCCATCTGGTTCTGTGTGCTTCACCAGATTCTTTTCCTGAAAAGTGGGAATGGTGGGCCTTTCTACTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTTACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGTATAATCAAAACAGGGTAGTAATTATGCTTGCTTTGGTTCTTCTTGCCCTTTATGTGTTTTAATCCCAAAATGCTCTTATGTCTAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACAGTGAAGGTATAAAATGTTTGAGCTTCTTTCTGTTCGAATTATGCTATTCACTACATTTTAACCGAGTGTCGTGCTCTTGGTTCTGCTGCAAAAGATTGGAACTCCTGTTTTTTTGTGTTGTTTTTTTGTTTTTTTTCCCTTTGAGAACCTTCAAACGTTTATTTGGTATGATGATGATTACTTATATATGTTGAAGTGCAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGAGCCAGCATTTGAGGTGTGGTAACTTGCAAACTTCTTTTTTTTTTTTTTAAATACATTTTGTTCATCCATGTGTTGTAGAATTGTCAGTGAATGGTTTGGTTTAAAAAATGGTGTTTTGTTGGAAGCAATCAGAATTTCATTTTATGTTGGGGAATAGGAGGTTGGGCATCAACAGCTAGATTTGTTGAGAAAATGAAATCGATAGAAATATAATATTGCAGAAGCAATAATCAAAATCCGAATCTTTGTTATACAAAGAGAACAAAATGGAAAATGAGTAAGTAGAACCTACTAGATAAATAAACTTCTAACTGAAGTAGAAACAATTGGCGATGCAAAGAACGCGATACACAAAATGACACTGAAAATGTGATACAAGCATTACATGGAAGCCTCACCCTTTTATAGGTACAAAACCGAACCTAACTAATACCACTTACAAAATTTAAAGTAGAAAATCAAACTTAAATGAAAGCTTAAAAAGAACAAAAAAAATAAAAAAAATAAAAAAAAATAAAAAAAACAAAAACAAAAAGAAAAGGAAATGTTAGCTCTAACTTTAAAGAAATAACTTAAGACATTAATCTGAAAATTAAATATAACAATTAAGTCAGAAACTTAAAAAACACAACTAAAATTTAATTAGGAAACATCTCAAATCTCAACAGTTTTTAAGATTTAAACATGGCAAAAGTGCAAACCAACATACCTTGTAACCGGAAGCTTCTTAACAACTGCATAGTTTTCTTTCTTAGTATATGATCAACTTGTCATAATCATTCCTTCAAATTTCAACTTTTCATATTAAATTGAAAACCCATTTCTTTCTTTCAACCATGTAGCATCAGTGATAACATGCCTAATGTAGGGGCCTCTTCACCCTATCATTTAATCAAATTTGAATGAACAAATTAAATAAGGGAAAAAAACTAGGGGCTACTGTAGAACTTGAATCAATGTTTAGGTACTAAAACGATATTCTAATAGAAACTGTTATAAACGTTTGTCATGTACAAGAGAAATTGTTTAAACGGGTATCCATTAGAATAGTGCATGGTGGAGGAGCCTCTTCACCCTTTCCCCTACGTGAAAAGGGTCATTTGTTGTGATTGACTTATTTTTGGGCTATTTTATGGGGCCATTGGCGTGAAAGAACAATAGGCTTTTTAGGGGGATTGAGAAGTCTTAGGTCAATTGTAGTCCTTTGTTAGATTTCAAACCTCTCTCTAGGTTTCCATTTGTAAATCCACTCTAGGTTTCCATTTCTTTCATTTGTTCTCAATGAAAGTAGTGGCTCTTCATCAAACTGGTATCCATTGCATAAACTTGTGTAGTTCTCTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTCTGTAGGTACTTTTTGCTATGCTTGTAATATTTGGGTTTTCATTGAATATAGGGTCGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCTCTTGAGCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGTTTGATGACTCCCGACTAGAAAACCAGATCAATCATAGTTGCTTCCCTTGTTTGGATCAGTAACTTTTGCACTTGATGACAAGTGTGCTTTTGTTGCCTCAGGGGCTGGGATTGACCGTTCATCTCTCGTAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATGTTGAGGGCCTGGTAATAAGTTCAGAGGGCAATCTTCTAGACGCCCTTGGTGCTGCCATTAAGGTATATTTTCATTGTTGAGTTTTGTCTACTCCTGTGTCATTTGCAACTCTAATAACCAGATTTTGTACTTATTGTTTATTCTTTACAAGGCAGCATGCCCATATAACCTTTGCTGCTTTAACCAAAGCACTGTCCAATAAACATCAATATATTTTTGATTTCTGATTGAGTAAAGTCAAGTTTGGCAACCGAAGCAAGTCTCTTAAGCCTATATTTGTCTCTTTCAATTTTGAAATATTTGCTTCAAAACTTACTCTATTGATGCTCTAATGAAATTTCTTCTTTACTAATATCATTGTTGATTTTATCACTGTAGTTTTAACTTCTATTGTTGTTTGGTATTATTTACCGACCTCAATTTCACCACACTAGTTTTATATTTCCATTTCATAATTAGGAAATGTTAGCATTCGTTGATGCCATGGAGGGTTGTGCAAAAACCAAAAAAAAAAAACTGATGAACCGAACTGGACCGGATAACGCGGTTTGGTCCGATTTTTTTGAAGAATAGAGAACAAACGGTTCACGGAAGAGCAAAACCGAATGGTTCGATTCGGTCATCGGTTCATTACCCTAAAACATTGCAGAAAACCAAACCGAACTGTAGTAAAAACAAGCTGGGACATAAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGATAAGAGCGAAACGCTCTCGCTCTTTCTCTCGTTCTTCCTCTCGCTTTAATTGCACCTTCGGTTAAAAACCGAATCGAACCGGCCTGAACTGAATTAGGTTGGTTCGGTTCAAGAACCCAAACCGATGTGAACCGGTTTTCAGTGGTTCTTCTTCATTGTGAACCGATAACTTCGGTTTGGTTCATGGTTCGTCCCAAAACCGGACCGAACCGAACCGAACCGTGCACACCCCTAATGCCATGCTAGATTAAGATATTGAAGACATGGGTTTATTCAGATCTACCTTTTCTAAAATAATAATAAAAAAATTTGGCACAGACATGATTAGAAACTTTGGACACTTCTATTAGATGATTTTAATTATATTTGAATTTATCATTTTGATTTTTCAGCAGTTTCACTCCCTCTTTTTGCTGGTTATCTAATATATGGACTCTTTGCTTAGTTGTTCTCAAAGGACTTCTGCTATTATTGGTTGTAGTTGGCCGTATTAGTTGTAAAGTAATTGCTTTATTTTGTTATATTTTGTTTTATTGTATTTTGAGTGTTGATCTCTTCTCATTTTATCAATGAAAAGTCTTGTTTCTTTTTTTTTTAAAAAAATTAATCTTTGCTAGGCCATTACATATCAAAGGGGTAAAATGGGGAAATTTTCTAATGACAGGTAATGGGATGTGTTGATATGGTCCTGAGGGGAAGGACTAACGAGTGTGGTTATATGGGTAGGCAGGGTTTGTTTGGGGAGTTCTTTTTTTTTGTGGTTATTTTGGGATTTGCGTCTATTGTTGCTGTGTTTGTTATTGATTTCTTTCTACTTTCCTTGAAGAAGTATATCTCGTGTTTTTCGATTAATATAAAACTTCAACCTTAATACTTTACTAAATCTTTTAGTACTCACAGTTACTATGAACAAGATGAAACTAATAAAACTTGAAACTGTTCTTCCCAAGGCTGCTTTGAGCAATACAGGCATCCCGAAAGTCCACGTTGCTGCAGAAGCATCAGCCAACGAACAACCTGAAGTCGATATAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCATTAACAGGCATGGTCACATTTGCGGGTTGACAAAACGCGGGGGTGCAGGGGTCGATCCAAGCATAATCCTCGATATGATATCTGTTGGCAAACATGTCAGCGAGGAGTTACTAAACAAGTTGGACTCAGAGATTGTGGCTGCTGAAGCTGATGAAGAAGAATGACAAAGCTTTTAGATCTCTTACTGTTCATTTCCATTGTAGAATCTTTGGTTGATAATCTTCAATGGAATTCTAGTCTAGATGGTATAGATGATTGTAAGGTAGCAATCTTGTAAAATTGCTAGGTTTTAGACCTTTGGTTCTGTCATGGCATTTTGGTCCTAGTTTAATTATGTCTAACATAATTATAGTTCAAATGACATAAAGTATGTACTCTTGATCAAAGAGTCAATAGTTCAAGTTGTTTACTACGTATGTTGAACAAAGAACTATTGGCTTATTCTTTGGAAACTCAAAATGAGCTTTGAAGGGATTGGAACTTGGAAAGATTAAGATTGAAGGCCAAATGCACAAATGGATGTGGACCACGAATGGAGCAACTATGAGGGGAGAACCTCGAACATGTTCTCTACATTAGGCATGTTTATCAATTTTCATCTTAAGCTTTTAATTTTCATCTTAAGTTGGAGAATCTTTATGTTCCCATTTTGCCCCTCGTATTTAGATATATACCTACTATACCCTTAATTATTTATATGTCAATCTTCACAC

mRNA sequence

ATGAAATTTCACCAGCCGCAAGCCCCTTCTACTCCGTTTTCATCTTCTCGACCGCATGCGCCAGCTGAAGTAGGTTCTCTTCCACCTCCGTCCGCCACACGCTCGCGCCGTAGGCTGTCGCCGCTCTTCTCCGTTAACGCCGTGGTCGTGGGTTTGTTTGTCAGTCTGTCTGTCTCTCTCACACGCGAACAGAAGGGAAGGGAGCCTCACCGCCGTCGCCCACCTCGCACCACCTCCGTTCGCCGTCTGCAGCCTGCGCCGCTGGTCGCCGTCCAGTCGTCGTCAGTGCTGTCCGTTTGCCAGAGCCTTTCTACTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTTACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACAGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGAGCCAGCATTTGAGGGTCGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCTCTTGAGCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCGTTCATCTCTCGTAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATGTTGAGGGCCTGGTAATAAGTTCAGAGGGCAATCTTCTAGACGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCGAAAGTCCACGTTGCTGCAGAAGCATCAGCCAACGAACAACCTGAAGTCGATATAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCATTAACAGGCATGGTCACATTTGCGGGTTGACAAAACGCGGGGGTGCAGGGGTCGATCCAAGCATAATCCTCGATATGATATCTGTTGGCAAACATGTCAGCGAGGAGTTACTAAACAAGTTGGACTCAGAGATTGTGGCTGCTGAAGCTGATGAAGAAGAATGACAAAGCTTTTAGATCTCTTACTGTTCATTTCCATTGTAGAATCTTTGGTTGATAATCTTCAATGGAATTCTAGTCTAGATGGTATAGATGATTGTAAGGTAGCAATCTTGTAAAATTGCTAGGTTTTAGACCTTTGGTTCTGTCATGGCATTTTGGTCCTAGTTTAATTATGTCTAACATAATTATAGTTCAAATGACATAAAGTATGTACTCTTGATCAAAGAGTCAATAGTTCAAGTTGTTTACTACGTATGTTGAACAAAGAACTATTGGCTTATTCTTTGGAAACTCAAAATGAGCTTTGAAGGGATTGGAACTTGGAAAGATTAAGATTGAAGGCCAAATGCACAAATGGATGTGGACCACGAATGGAGCAACTATGAGGGGAGAACCTCGAACATGTTCTCTACATTAGGCATGTTTATCAATTTTCATCTTAAGCTTTTAATTTTCATCTTAAGTTGGAGAATCTTTATGTTCCCATTTTGCCCCTCGTATTTAGATATATACCTACTATACCCTTAATTATTTATATGTCAATCTTCACAC

Coding sequence (CDS)

ATGAAATTTCACCAGCCGCAAGCCCCTTCTACTCCGTTTTCATCTTCTCGACCGCATGCGCCAGCTGAAGTAGGTTCTCTTCCACCTCCGTCCGCCACACGCTCGCGCCGTAGGCTGTCGCCGCTCTTCTCCGTTAACGCCGTGGTCGTGGGTTTGTTTGTCAGTCTGTCTGTCTCTCTCACACGCGAACAGAAGGGAAGGGAGCCTCACCGCCGTCGCCCACCTCGCACCACCTCCGTTCGCCGTCTGCAGCCTGCGCCGCTGGTCGCCGTCCAGTCGTCGTCAGTGCTGTCCGTTTGCCAGAGCCTTTCTACTGGAGAGAAGCTTTTCATACAAGGTGGTATTGCTCAGGATCTTCGCACTGATGGTCGAGGGAGACTTACTTATCGACCCATCTCTGTAGAAACTGATGTGATCTCTCAGGCAAATGGTTCAGCAAGGGTCAGAATGGGTGGTACTGAAGTTATTGCTACAGTGAAGGCTGAACTTGGAAGGCCTAATCCAATGCAGCCTGACAAAGGGAAGGTTTCAATCTCTGTTGATTGCAGCCCAATTGCGGAGCCAGCATTTGAGGGTCGGGGTGGTGAAGAGTTGTCAACAGAACTCTCGGTTGCTCTTGAGCGGTGTCTCTTAGGTGGAAAGAGTGGTTCAGGGGCTGGGATTGACCGTTCATCTCTCGTAGTTGTGGAAGGGAAGCTTTGCTGGGATCTCTATGTTGAGGGCCTGGTAATAAGTTCAGAGGGCAATCTTCTAGACGCCCTTGGTGCTGCCATTAAGGCTGCTTTGAGCAATACAGGCATCCCGAAAGTCCACGTTGCTGCAGAAGCATCAGCCAACGAACAACCTGAAGTCGATATAAGTGATGAAGAATTTCTACAGTTCGACACATCTGGGGTTCCAGCCATAGTTACATTGACAAAGGTGGGTAAGCACTACATCGTTGATGCTACTTTGGAAGAAGAATCTCAAATGAGCTCTGCAGTCTCCATATCCATTAACAGGCATGGTCACATTTGCGGGTTGACAAAACGCGGGGGTGCAGGGGTCGATCCAAGCATAATCCTCGATATGATATCTGTTGGCAAACATGTCAGCGAGGAGTTACTAAACAAGTTGGACTCAGAGATTGTGGCTGCTGAAGCTGATGAAGAAGAATGA

Protein sequence

MKFHQPQAPSTPFSSSRPHAPAEVGSLPPPSATRSRRRLSPLFSVNAVVVGLFVSLSVSLTREQKGREPHRRRPPRTTSVRRLQPAPLVAVQSSSVLSVCQSLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGIDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE

Homology

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BLAST of ClCG04G002225 vs. NCBI nr
Match: XP_004151651.2 (exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome complex component RRP42 [Cucumis sativus] >XP_011656329.1 exosome complex component RRP42 [Cucumis sativus] >XP_031737840.1 exosome complex component RRP42 [Cucumis sativus] >KGN63566.1 hypothetical protein Csa_013213 [Cucumis sativus])

HSP 1 Score: 526.6 bits (1355), Expect = 1.9e-145
Identity = 270/283 (95.41%), Postives = 277/283 (97.88%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATVKAE
Sbjct: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           LGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSGSGAGID
Sbjct: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGID 123

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVHVAAEA  NEQP
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           EVD+SDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISI+RHGHICGLT
Sbjct: 184 EVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLT 243

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KRGG GVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 244 KRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of ClCG04G002225 vs. NCBI nr
Match: XP_038891978.1 (exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891979.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891980.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891981.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891982.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891983.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891984.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891985.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891986.1 exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891987.1 exosome complex component RRP42 isoform X1 [Benincasa hispida])

HSP 1 Score: 526.2 bits (1354), Expect = 2.4e-145
Identity = 269/283 (95.05%), Postives = 280/283 (98.94%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LS GEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE
Sbjct: 4   LSIGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 63

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVAL+RCLLGGKSGSGA ID
Sbjct: 64  LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALDRCLLGGKSGSGAAID 123

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL+VVEGKLCWDLY+EGLVISSEGNLLDALGAAIKAALS+TGIPKVHVAAE+SANEQP
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVISSEGNLLDALGAAIKAALSSTGIPKVHVAAESSANEQP 183

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           EVD+SDEEFLQFDTSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSIS+NRHGHICGLT
Sbjct: 184 EVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISVNRHGHICGLT 243

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KRGGAG+DPSIILDMISVGKHVSEELL+KLDSEIVAA+ADEEE
Sbjct: 244 KRGGAGLDPSIILDMISVGKHVSEELLDKLDSEIVAAQADEEE 286

[Close]

BLAST of ClCG04G002225 vs. NCBI nr
Match: XP_008441268.1 (PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441270.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899428.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899429.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899430.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899431.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_016899432.1 PREDICTED: exosome complex component RRP42-like [Cucumis melo] >KAA0031919.1 exosome complex component RRP42-like [Cucumis melo var. makuwa] >TYK06691.1 exosome complex component RRP42-like [Cucumis melo var. makuwa])

HSP 1 Score: 521.2 bits (1341), Expect = 7.8e-144
Identity = 266/283 (93.99%), Postives = 277/283 (97.88%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATVKAE
Sbjct: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           LGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID
Sbjct: 64  LGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 123

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEAS NEQP
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGNEQP 183

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           EVD+SDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISINRHGHICGLT
Sbjct: 184 EVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHICGLT 243

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KRGG GVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 244 KRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of ClCG04G002225 vs. NCBI nr
Match: XP_023529361.1 (exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exosome complex component RRP42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.5 bits (1316), Expect = 6.2e-141
Identity = 259/285 (90.88%), Postives = 275/285 (96.49%), Query Frame = 0


Query: 101 QSLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 160
           + LS GEKLFIQGGIAQDLRTDGR RLTYRPISVETDVISQANGSARVRMGGTEVIATVK
Sbjct: 2   KGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61

Query: 161 AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAG 220
           AELGRPN MQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSG+GAG
Sbjct: 62  AELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAG 121

Query: 221 IDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 280
           ID SSL+VVEGKLCWDLY+EGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+AEASANE
Sbjct: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANE 181

Query: 281 QPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICG 340
           QPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRHGH+CG
Sbjct: 182 QPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCG 241

Query: 341 LTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           LTKRGGAGVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 242 LTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of ClCG04G002225 vs. NCBI nr
Match: XP_022927940.1 (exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome complex component RRP42 [Cucurbita moschata])

HSP 1 Score: 510.0 bits (1312), Expect = 1.8e-140
Identity = 258/285 (90.53%), Postives = 274/285 (96.14%), Query Frame = 0


Query: 101 QSLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 160
           + LS GEKLFIQGGIAQDLRTDGR RLTYRPISVETDVISQANGSARVRMGGTEVIATVK
Sbjct: 2   KGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61

Query: 161 AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAG 220
           AELGRPN MQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSG+GAG
Sbjct: 62  AELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAG 121

Query: 221 IDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 280
           ID SSL+VVEGKLCWDLY+EGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+ EASANE
Sbjct: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANE 181

Query: 281 QPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICG 340
           QPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRHGH+CG
Sbjct: 182 QPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCG 241

Query: 341 LTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           LTKRGGAGVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 242 LTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of ClCG04G002225 vs. ExPASy Swiss-Prot
Match: Q15024 (Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3)

HSP 1 Score: 203.0 bits (515), Expect = 6.2e-51
Identity = 110/280 (39.29%), Postives = 168/280 (60.00%), Query Frame = 0


Query: 102 SLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKA 161
           +LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VKA
Sbjct: 5   TLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKA 64

Query: 162 ELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGI 221
           E+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     +
Sbjct: 65  EMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKS----SV 124

Query: 222 DRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQ 281
           D  +L +   + CW LYV+ L++   GNL DA+  A+KAAL NT IP+V V  +   ++ 
Sbjct: 125 DLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKD 184

Query: 282 PEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGL 341
            E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +  +
Sbjct: 185 IELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCM 244

Query: 342 TKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEA 382
            K G   +DP  I +M+  GK V + L   L S +   E+
Sbjct: 245 RKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 279

[Close]

BLAST of ClCG04G002225 vs. ExPASy Swiss-Prot
Match: Q9D0M0 (Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-49
Identity = 109/273 (39.93%), Postives = 163/273 (59.71%), Query Frame = 0


Query: 102 SLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKA 161
           +LS  EK++I  G+ +DLR DGRG   YR + VETDV+S  +GSARV++G T+++  VKA
Sbjct: 5   ALSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKA 64

Query: 162 ELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGI 221
           E+G P   +P++G +   VDCS  A P FEGRGG++L TE++  L R +   KS     +
Sbjct: 65  EMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKS----SV 124

Query: 222 DRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQ 281
           D  SL +   + CW LYV+ L++   GNL DA+  A+KAAL NT IP+V V  +    + 
Sbjct: 125 DLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKD 184

Query: 282 PEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGL 341
            E+     + ++     VP IVTL K+G  ++VDATL+EE+   +++ +S+   G +  +
Sbjct: 185 IELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCM 244

Query: 342 TKRGGAGVDPSIILDMISVGKHVSEELLNKLDS 375
            K G   +DP  I +M+   K V + L   L S
Sbjct: 245 RKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272

[Close]

BLAST of ClCG04G002225 vs. ExPASy Swiss-Prot
Match: Q54VM4 (Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 GN=exosc7 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-44
Identity = 113/318 (35.53%), Postives = 163/318 (51.26%), Query Frame = 0


Query: 101 QSLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 160
           Q +S  E LFIQ G+  ++R+DGR R+ YR  ++ET  I  ANGSARV++  TEV+  VK
Sbjct: 2   QKISPSESLFIQQGVENNIRSDGRNRVDYRNFAIETGEIIHANGSARVKLSQTEVLVGVK 61

Query: 161 AELGR------PNPMQPDKGK-VSISVDCSPIAEPAFEGRGGEELSTELSVALERC---- 220
           AE+         N  Q D  K +  SV+C P A P FEG+G E L+ ELS  LER     
Sbjct: 62  AEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIELSKQLERLYSHP 121

Query: 221 -----------LLGGKSGSGAGI--------------------DRSSLVVVEGKLCWDLY 280
                      ++   + +   I                    D +   +V GK  W LY
Sbjct: 122 NVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNCFSIVSGKYYWTLY 181

Query: 281 VEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSG 340
           V+ +V+ S+GNL DAL  A ++AL NT IP+V            EV    E+ L      
Sbjct: 182 VDAIVLDSDGNLFDALSIACRSALQNTRIPRVKAIQGEYEEITFEVSDDPEDTLSLSIDN 241

Query: 341 VPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIILDMI 377
           VP  VTLTK+G  +++D TL+EE  M++ +++ +N   +IC + K G  G+DP+ I  MI
Sbjct: 242 VPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICSIQKGGIDGLDPTTINQMI 301

[Close]

BLAST of ClCG04G002225 vs. ExPASy Swiss-Prot
Match: O26778 (Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp42 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.0e-33
Identity = 85/257 (33.07%), Postives = 134/257 (52.14%), Query Frame = 0


Query: 120 RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 179
           R DGR    +R IS+ET VIS+A GS+RV++G T++I  VK ++G P P  P+ G +  +
Sbjct: 25  RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTN 84

Query: 180 VDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGIDRSSLVVVEGKLCWDLYV 239
            +  P+A P FE    +E S ELS  ++RC+   +      ID   L ++EG   W L++
Sbjct: 85  SELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCIIEGSKVWMLFL 144

Query: 240 EGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGV 299
           +  +I  +GNL DA   A  AAL +T IP   V       E  EV I+ E+      +  
Sbjct: 145 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV-------EDGEVVINREKMQPLPVNRK 204

Query: 300 PAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIILDMIS 359
             + T  K+G   ++D +LEEE  +++ +SI +   G IC + K G   +    +L  +S
Sbjct: 205 ALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVS 264

Query: 360 VGKHVSEELLNKLDSEI 377
           +      +L+  LD  +
Sbjct: 265 IAVEKVPQLIEYLDKSM 269

[Close]

BLAST of ClCG04G002225 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-33
Identity = 87/258 (33.72%), Postives = 144/258 (55.81%), Query Frame = 0


Query: 120 RTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAELGRPNPMQPDKGKVSIS 179
           R DGR    +RPI V   VIS+ANGSA VR+G T+++  VK E+GRP P  P++G ++++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 180 VDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGIDRSSLVVVEGKLCWDLYV 239
            +  P+A+P+FE    +E + ELS  ++R +   +      ID   L + EG+ CW  +V
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEM-----IDLEELCIEEGEHCWVTFV 142

Query: 240 EGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQPEVDISDEEFLQFDTSGV 299
           +  V+  +GNL DA      +ALS T +PK  V  +       EV++ +E+      +  
Sbjct: 143 DIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDD-------EVEVMEEDTEPLAINDF 202

Query: 300 PAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLTKRGGAGVDPSIIL-DMI 359
           P  VT+ KVG++ +VD  LEEE  M + +++++   G +C + K G  G  P  +L D I
Sbjct: 203 PISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK-GELGDFPEHLLEDAI 262

Query: 360 SVGKHVSEELLNKLDSEI 377
            +    +EE+   + +++
Sbjct: 263 DLATKKAEEVRRTVKAQL 267

[Close]

BLAST of ClCG04G002225 vs. ExPASy TrEMBL
Match: A0A0A0LU91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 9.0e-146
Identity = 270/283 (95.41%), Postives = 277/283 (97.88%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATVKAE
Sbjct: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           LGRPNPMQPDKGKVSISVDCSP AEPAFEGRGGEELSTELS+ALERCLLGGKSGSGAGID
Sbjct: 64  LGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERCLLGGKSGSGAGID 123

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVHVAAEA  NEQP
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPKVHVAAEALDNEQP 183

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           EVD+SDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISI+RHGHICGLT
Sbjct: 184 EVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISIDRHGHICGLT 243

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KRGG GVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE
Sbjct: 244 KRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286

[Close]

BLAST of ClCG04G002225 vs. ExPASy TrEMBL
Match: A0A1S3B3T5 (exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 3.8e-144
Identity = 266/283 (93.99%), Postives = 277/283 (97.88%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATVKAE
Sbjct: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           LGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID
Sbjct: 64  LGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 123

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEAS NEQP
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGNEQP 183

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           EVD+SDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISINRHGHICGLT
Sbjct: 184 EVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHICGLT 243

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KRGG GVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 244 KRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of ClCG04G002225 vs. ExPASy TrEMBL
Match: A0A5A7SRK6 (Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001860 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 3.8e-144
Identity = 266/283 (93.99%), Postives = 277/283 (97.88%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LSTGEKLFIQ GIAQDLRTDGRGRLTYRPIS+ETDVISQANGSARVRMGGTEVIATVKAE
Sbjct: 4   LSTGEKLFIQAGIAQDLRTDGRGRLTYRPISIETDVISQANGSARVRMGGTEVIATVKAE 63

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           LGRPNPMQ +KGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID
Sbjct: 64  LGRPNPMQSNKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 123

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL+VVEGKLCWDLY+EGLV+SSEGNLLDALGAAIKAALSNTGIPKVH+AAEAS NEQP
Sbjct: 124 LSSLIVVEGKLCWDLYIEGLVLSSEGNLLDALGAAIKAALSNTGIPKVHIAAEASGNEQP 183

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           EVD+SDEEF+QF+TSGVPAIVTLTKVGKHYI+DATLEEESQMSSAVSISINRHGHICGLT
Sbjct: 184 EVDVSDEEFIQFETSGVPAIVTLTKVGKHYIIDATLEEESQMSSAVSISINRHGHICGLT 243

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KRGG GVDPSIILDMISVGK+VSEELLNKLDSEIVAAE DEEE
Sbjct: 244 KRGGVGVDPSIILDMISVGKNVSEELLNKLDSEIVAAEVDEEE 286

[Close]

BLAST of ClCG04G002225 vs. ExPASy TrEMBL
Match: A0A6J1EQ99 (exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 8.7e-141
Identity = 258/285 (90.53%), Postives = 274/285 (96.14%), Query Frame = 0


Query: 101 QSLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 160
           + LS GEKLFIQGGIAQDLRTDGR RLTYRPISVETDVISQANGSARVRMGGTEVIATVK
Sbjct: 2   KGLSVGEKLFIQGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61

Query: 161 AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAG 220
           AELGRPN MQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSVALERCLLGGKSG+GAG
Sbjct: 62  AELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVALERCLLGGKSGAGAG 121

Query: 221 IDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 280
           ID SSL+VVEGKLCWDLY+EGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+ EASANE
Sbjct: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSVEASANE 181

Query: 281 QPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICG 340
           QPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRHGH+CG
Sbjct: 182 QPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHGHVCG 241

Query: 341 LTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           LTKRGGAGVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 242 LTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of ClCG04G002225 vs. ExPASy TrEMBL
Match: A0A6J1JIH0 (exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.6e-139
Identity = 256/285 (89.82%), Postives = 274/285 (96.14%), Query Frame = 0


Query: 101 QSLSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 160
           + LS GEKLFI+GGIAQDLRTDGR RLTYRPISVETDVISQANGSARVRMGGTEVIATVK
Sbjct: 2   KGLSVGEKLFIEGGIAQDLRTDGRRRLTYRPISVETDVISQANGSARVRMGGTEVIATVK 61

Query: 161 AELGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAG 220
           AELGRPN MQPDKGKVSI VDCSP AEP FEGRGGEEL+TELSV+LERCLLGGKSG+GAG
Sbjct: 62  AELGRPNAMQPDKGKVSIFVDCSPTAEPTFEGRGGEELATELSVSLERCLLGGKSGAGAG 121

Query: 221 IDRSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANE 280
           ID SSL+VVEGKLCWDLY+EGLV+SS+GNLLDALGAAIKAALSNTGIPKV+V+AEASANE
Sbjct: 122 IDLSSLIVVEGKLCWDLYIEGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVSAEASANE 181

Query: 281 QPEVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICG 340
           QPEVD+SDEEFLQFDTSGVP IVTLTKVG+HYIVDATLEEESQMSSA+SIS+NRH H+CG
Sbjct: 182 QPEVDVSDEEFLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAISISVNRHCHVCG 241

Query: 341 LTKRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           LTKRGGAGVDPS+ILDMISVGKHVSE+LLNKLDSEI AAEADEEE
Sbjct: 242 LTKRGGAGVDPSVILDMISVGKHVSEQLLNKLDSEIAAAEADEEE 286

[Close]

BLAST of ClCG04G002225 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 437.2 bits (1123), Expect = 1.4e-122
Identity = 219/283 (77.39%), Postives = 257/283 (90.81%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LS GE+ FI+GGIAQDLRTDGR RLTYRPI VET VI QANGSARVR+GGT+VIA+VKAE
Sbjct: 3   LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           +GRP+ +QPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL+RCLLGGKSG+GAGI+
Sbjct: 63  IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL++ EGK+CWDLY++GLVISS+GNLLDALGAAIKAAL+NT IPKV+V+AE + +EQP
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQP 182

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           E+DISDEE+LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSAVSIS+NR GHICGLT
Sbjct: 183 EIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLT 242

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KR G+G+DPS+ILDMISV KHV+E L++KLDSEI AAEA E+E
Sbjct: 243 KRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of ClCG04G002225 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 437.2 bits (1123), Expect = 1.4e-122
Identity = 219/283 (77.39%), Postives = 257/283 (90.81%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           LS GE+ FI+GGIAQDLRTDGR RLTYRPI VET VI QANGSARVR+GGT+VIA+VKAE
Sbjct: 3   LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           +GRP+ +QPDKGKV++ +DCSP AEP F GRGGEELS+EL++AL+RCLLGGKSG+GAGI+
Sbjct: 63  IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASANEQP 282
            SSL++ EGK+CWDLY++GLVISS+GNLLDALGAAIKAAL+NT IPKV+V+AE + +EQP
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQP 182

Query: 283 EVDISDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVSISINRHGHICGLT 342
           E+DISDEE+LQFDTS VP IVTLTKVG HYIVDAT EEESQMSSAVSIS+NR GHICGLT
Sbjct: 183 EIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLT 242

Query: 343 KRGGAGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 386
           KR G+G+DPS+ILDMISV KHV+E L++KLDSEI AAEA E+E
Sbjct: 243 KRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDE 285

[Close]

BLAST of ClCG04G002225 vs. TAIR 10
Match: AT3G12990.1 (ribonuclease PH45A )

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-27
Identity = 80/258 (31.01%), Postives = 133/258 (51.55%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           L+  E  F++  +  +LR DGRG   YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 282
             SL V+ GKL W + ++  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 283 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISINRHGH 342
             PE    + E L      +P   T      G   ++D T  EE+ M   +++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 343 ICGLTKRGGAGVDPSIIL 356
           IC + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of ClCG04G002225 vs. TAIR 10
Match: AT3G12990.2 (ribonuclease PH45A )

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-27
Identity = 80/258 (31.01%), Postives = 133/258 (51.55%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           L+  E  F++  +  +LR DGRG   YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 282
             SL V+ GKL W + ++  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 283 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISINRHGH 342
             PE    + E L      +P   T      G   ++D T  EE+ M   +++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 343 ICGLTKRGGAGVDPSIIL 356
           IC + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

[Close]

BLAST of ClCG04G002225 vs. TAIR 10
Match: AT3G12990.3 (ribonuclease PH45A )

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-27
Identity = 80/258 (31.01%), Postives = 133/258 (51.55%), Query Frame = 0


Query: 103 LSTGEKLFIQGGIAQDLRTDGRGRLTYRPISVETDVISQANGSARVRMGGTEVIATVKAE 162
           L+  E  F++  +  +LR DGRG   YR ++++     +  GS++V++G T V+A V A+
Sbjct: 11  LTVNESKFVESALQSELRVDGRGLYDYRKLTIK---FGKEYGSSQVQLGQTHVMAFVTAQ 70

Query: 163 LGRPNPMQPDKGKVSISVDCSPIAEPAFEGRGGEELSTELSVALERCLLGGKSGSGAGID 222
           L +P   +P +G  SI  + SP+A+P+FE     E + EL   ++R L   ++     +D
Sbjct: 71  LVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRA-----VD 130

Query: 223 RSSLVVVEGKLCWDLYVEGLVISSEGNLLDALGAAIKAALSNTGIPKVHVAAEASAN--- 282
             SL V+ GKL W + ++  ++ + GNL+DA   A  AAL     P   V  + S +   
Sbjct: 131 TESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVII 190

Query: 283 EQPEVDISDEEFLQFDTSGVPAIVT--LTKVGKHYIVDATLEEESQMSSAVSISINRHGH 342
             PE    + E L      +P   T      G   ++D T  EE+ M   +++++N +G 
Sbjct: 191 HPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGD 250

Query: 343 ICGLTKRGGAGVDPSIIL 356
           IC + K G  GV+ S+IL
Sbjct: 251 ICAIQKPGEEGVNQSVIL 256

The following BLAST results are available for this feature:

BLAST of ClCG04G002225 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151651.2	1.9e-145	95.41	exosome complex component RRP42 [Cucumis sativus] >XP_011656293.1 exosome comple...	[more]
XP_038891978.1	2.4e-145	95.05	exosome complex component RRP42 isoform X1 [Benincasa hispida] >XP_038891979.1 e...	[more]
XP_008441268.1	7.8e-144	93.99	PREDICTED: exosome complex component RRP42-like [Cucumis melo] >XP_008441269.1 P...	[more]
XP_023529361.1	6.2e-141	90.88	exosome complex component RRP42 [Cucurbita pepo subsp. pepo] >XP_023529362.1 exo...	[more]
XP_022927940.1	1.8e-140	90.53	exosome complex component RRP42 [Cucurbita moschata] >XP_022927941.1 exosome com...	[more]

BLAST of ClCG04G002225 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15024	6.2e-51	39.29	Exosome complex component RRP42 OS=Homo sapiens OX=9606 GN=EXOSC7 PE=1 SV=3	[more]
Q9D0M0	1.2e-49	39.93	Exosome complex exonuclease RRP42 OS=Mus musculus OX=10090 GN=Exosc7 PE=1 SV=2	[more]
Q54VM4	1.5e-44	35.53	Putative exosome complex exonuclease RRP42 OS=Dictyostelium discoideum OX=44689 ...	[more]
O26778	2.0e-33	33.07	Exosome complex component Rrp42 OS=Methanothermobacter thermautotrophicus (strai...	[more]
Q8TYC2	3.4e-33	33.72	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of ClCG04G002225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU91	9.0e-146	95.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004330 PE=4 SV=1	[more]
A0A1S3B3T5	3.8e-144	93.99	exosome complex component RRP42-like OS=Cucumis melo OX=3656 GN=LOC103485450 PE=...	[more]
A0A5A7SRK6	3.8e-144	93.99	Exosome complex component RRP42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1EQ99	8.7e-141	90.53	exosome complex component RRP42 OS=Cucurbita moschata OX=3662 GN=LOC111434693 PE...	[more]
A0A6J1JIH0	1.6e-139	89.82	exosome complex component RRP42 OS=Cucurbita maxima OX=3661 GN=LOC111486098 PE=4...	[more]

BLAST of ClCG04G002225 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07750.1	1.4e-122	77.39	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	1.4e-122	77.39	3'-5'-exoribonuclease family protein	[more]
AT3G12990.1	2.9e-27	31.01	ribonuclease PH45A	[more]
AT3G12990.2	2.9e-27	31.01	ribonuclease PH45A	[more]
AT3G12990.3	2.9e-27	31.01	ribonuclease PH45A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 129..268 e-value: 1.5E-27 score: 96.7
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 102..385 e-value: 2.0E-80 score: 272.3
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 299..362 e-value: 5.6E-9 score: 35.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11097:SF30	BNAA05G29900D PROTEIN	coord: 98..383
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 98..383
None	No IPR available	CDD	cd11367	RNase_PH_RRP42	coord: 102..376 e-value: 5.62481E-125 score: 359.602
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 295..378
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 103..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G002225.1	ClCG04G002225.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0071042	nuclear polyadenylation-dependent mRNA catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0034473	U1 snRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
biological_process	GO:0034476	U5 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)