ClCG04G001990 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCATTCAGTTGGAGAGTGTTTGAAGAGTGAGTTGTGAAGAACAACAAAAAAACAAGCTAAAAGGGAAGGAAGAAATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGTCTGCGAGGTCTTTCACTTCCTTCCTCCTTCTGTTTTTACCGCCTGTACCTTTCTTTCAACTCTACAATTCCCTTTTTCTTACTGTAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCTCTCTATCTCGCAATGGATGA GCATTCAGTTGGAGAGTGTTTGAAGAGTGAGTTGTGAAGAACAACAAAAAAACAAGCTAAAAGGGAAGGAAGAAATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCTCTCTATCTCGCAATGGATGA ATGTCTGCGAGAGGAAAGCGAAAGGACGAGGAAGATCACGCATCCGAGGGAGATGTTCCTCCTTCCAAGACATTCAAGAAAGATTCTGACGATACCGATGAAATCGTAGTCTGCGAGATTTCAAAGAACCGTAGGGTTATGGTCAGGAACTGGCAAGGAAAGATTGTCGTCGATATTCGTGAGTTTTATGTCAAAGATGGCAAGCAGATGCCTGGAAAGAAAGGTTTATCCCATCATCCTCTTCTTCTTCTTCTCTCTCTATCTCGCAATGGATGA MSARGKRKDEEDHASEGDVPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGLSHHPLLLLLSLSRNG Homology
BLAST of ClCG04G001990 vs. NCBI nr
Match: KAG7033606.1 (RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34 Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 0
BLAST of ClCG04G001990 vs. NCBI nr
Match: XP_038881105.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hispida]) HSP 1 Score: 154.1 bits (388), Expect = 5.9e-34 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of ClCG04G001990 vs. NCBI nr
Match: XP_038881106.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Benincasa hispida]) HSP 1 Score: 151.8 bits (382), Expect = 2.9e-33 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0
BLAST of ClCG04G001990 vs. NCBI nr
Match: XP_023518433.1 (RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo] >KAG6595609.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 148.7 bits (374), Expect = 2.5e-32 Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0
BLAST of ClCG04G001990 vs. NCBI nr
Match: KAG6603408.1 (RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32 Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 1.3e-20 Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 7.6e-08 Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy Swiss-Prot
Match: P53999 (Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9606 GN=SUB1 PE=1 SV=3) HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04 Identity = 22/65 (33.85%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy Swiss-Prot
Match: Q4R947 (Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis OX=9541 GN=SUB1 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04 Identity = 22/65 (33.85%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy Swiss-Prot
Match: Q5R6D0 (Activated RNA polymerase II transcriptional coactivator p15 OS=Pongo abelii OX=9601 GN=SUB1 PE=2 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04 Identity = 22/65 (33.85%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy TrEMBL
Match: A0A6J1HRT2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466134 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32 Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy TrEMBL
Match: A0A6J1EYI2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439635 PE=3 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31 Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy TrEMBL
Match: A0A6J1EHI0 (RNA polymerase II transcriptional coactivator KIWI-like OS=Cucurbita moschata OX=3662 GN=LOC111432568 PE=3 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31 Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy TrEMBL
Match: A0A6J1D8A4 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31 Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0
BLAST of ClCG04G001990 vs. ExPASy TrEMBL
Match: A0A6J1D5M3 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31 Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0
BLAST of ClCG04G001990 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator ) HSP 1 Score: 100.1 bits (248), Expect = 9.5e-22 Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 0
BLAST of ClCG04G001990 vs. TAIR 10
Match: AT5G09250.2 (ssDNA-binding transcriptional regulator ) HSP 1 Score: 97.8 bits (242), Expect = 4.7e-21 Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 0
BLAST of ClCG04G001990 vs. TAIR 10
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator ) HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11 Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of ClCG04G001990 vs. TAIR 10
Match: AT5G09240.1 (ssDNA-binding transcriptional regulator ) HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11 Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 0
BLAST of ClCG04G001990 vs. TAIR 10
Match: AT5G09240.3 (ssDNA-binding transcriptional regulator ) HSP 1 Score: 63.9 bits (154), Expect = 7.5e-11 Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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