ClCG04G001530 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G001530
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCCHC-type domain-containing protein
LocationCG_Chr04: 5168509 .. 5169008 (-)
RNA-Seq ExpressionClCG04G001530
SyntenyClCG04G001530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTAGTATTTTCTTACAACTACCTCATGAGTTTTTTGGGTTCAATCGAAAAAATTGTCTTGCAAGAAGATGTCATTGACTTTTGCAGTATGCAAAACGTTAAAACTTTATCAATGGTGGCTTATGTGGCTTAAGTAAATGTTATTTGTTTATGATATATTAACGATCCACAAGATAGTTCAATGACATATGCTTCAATTGCAACAAAATGGGACATCAACCTAAGGATTGTCATATGCCAAAGAATTTTTGACACAAAAATGTCCAATCTCATATCACAGAAGTTGATGCAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAAAATGCAACATGGTGGGGCATTCCAAGGAATGGTGGGTAGACACTAGTGCTACTCGTCATATTTGTGCCAACAAAAATATGTTCACATCCTATTTGCCAGTTTCTGGTGGAGAACAATTATTTATGGCCAACTCTTCTACTTTAAAGGTTGAAGGATAA

mRNA sequence

ATGAGACTAGTATTTTCTTACAACTACCTCATGAGTTTTTTGGGTTCAATCGAAAAAATTGTCTTGCAAGAAGATGTCATTGACTTTTGCAAAGTTGATGCAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAAAATGCAACATGGTGGGGCATTCCAAGGAATGGTGGGTAGACACTAGTGCTACTCGTCATATTTGTGCCAACAAAAATATGTTCACATCCTATTTGCCAGTTTCTGGTGGAGAACAATTATTTATGGCCAACTCTTCTACTTTAAAGGTTGAAGGATAA

Coding sequence (CDS)

ATGAGACTAGTATTTTCTTACAACTACCTCATGAGTTTTTTGGGTTCAATCGAAAAAATTGTCTTGCAAGAAGATGTCATTGACTTTTGCAAAGTTGATGCAGTATCAGATGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAAAATGCAACATGGTGGGGCATTCCAAGGAATGGTGGGTAGACACTAGTGCTACTCGTCATATTTGTGCCAACAAAAATATGTTCACATCCTATTTGCCAGTTTCTGGTGGAGAACAATTATTTATGGCCAACTCTTCTACTTTAAAGGTTGAAGGATAA

Protein sequence

MRLVFSYNYLMSFLGSIEKIVLQEDVIDFCKVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
Homology
[Close]
BLAST of ClCG04G001530 vs. NCBI nr
Match: KAA0066206.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK13469.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSD +ADIDLCAVIS+CNMV  SKEWWVDT ATRHICANKNMFTSY+ VS GE+LF
Sbjct: 25  EVDEVSDDIADIDLCAVISECNMVDDSKEWWVDTGATRHICANKNMFTSYMSVSNGEKLF 84

Query: 91  MANSSTLKVEG 102
           M NSST KVEG
Sbjct: 85  MGNSSTSKVEG 95

[Close]
BLAST of ClCG04G001530 vs. NCBI nr
Match: KAA0042920.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSDGV DIDLCAVIS+CNMVG+SKEWWVDT ATRHICANKNMFTSY+ VS GEQLF
Sbjct: 223 EVDEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGATRHICANKNMFTSYVSVSNGEQLF 282

Query: 91  MANSSTLKVE 101
           M NS T KV+
Sbjct: 283 MGNSFTSKVK 292

[Close]
BLAST of ClCG04G001530 vs. NCBI nr
Match: KAA0048117.1 (hypothetical protein E6C27_scaffold385G001960 [Cucumis melo var. makuwa] >TYJ96435.1 hypothetical protein E5676_scaffold546G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-23
Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           KVD VSDGVADIDLCAVI +CNM+G+SKEWWVDT AT HICANKN+FT Y+ +S GEQLF
Sbjct: 164 KVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATHHICANKNLFTLYVSISNGEQLF 223

Query: 91  MANSSTLKVEG 102
           M +SST KV+G
Sbjct: 224 MGSSSTSKVKG 234

[Close]
BLAST of ClCG04G001530 vs. NCBI nr
Match: TYK01391.1 (pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 5.2e-23
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSDGVADID+CAV+ +CNM+G+SKEWWVDT AT HICANKN+FTSY+ V+ GEQLF
Sbjct: 25  EVDEVSDGVADIDICAVVLECNMMGNSKEWWVDTGATCHICANKNLFTSYVSVANGEQLF 84

Query: 91  MANSSTLKVEG 102
           M NSS  KVEG
Sbjct: 85  MGNSSMSKVEG 95

[Close]
BLAST of ClCG04G001530 vs. NCBI nr
Match: KAA0062659.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK01193.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.8e-23
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSDGVADIDLCAVI +CNM+ +SKEWWVDT ATRHIC NKN+F SY+ VS GEQLF
Sbjct: 25  EVDEVSDGVADIDLCAVILECNMMDNSKEWWVDTGATRHICVNKNLFISYVSVSNGEQLF 84

Query: 91  MANSSTLKVEG 102
           M NSST KV+G
Sbjct: 85  MGNSSTSKVKG 95

[Close]
BLAST of ClCG04G001530 vs. ExPASy TrEMBL
Match: A0A5A7THY2 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001460 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSDGV DIDLCAVIS+CNMVG+SKEWWVDT ATRHICANKNMFTSY+ VS GEQLF
Sbjct: 223 EVDEVSDGVVDIDLCAVISECNMVGNSKEWWVDTGATRHICANKNMFTSYVSVSNGEQLF 282

Query: 91  MANSSTLKVE 101
           M NS T KV+
Sbjct: 283 MGNSFTSKVK 292

[Close]
BLAST of ClCG04G001530 vs. ExPASy TrEMBL
Match: A0A5D3CTI3 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75379G00010 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSD +ADIDLCAVIS+CNMV  SKEWWVDT ATRHICANKNMFTSY+ VS GE+LF
Sbjct: 25  EVDEVSDDIADIDLCAVISECNMVDDSKEWWVDTGATRHICANKNMFTSYMSVSNGEKLF 84

Query: 91  MANSSTLKVEG 102
           M NSST KVEG
Sbjct: 85  MGNSSTSKVEG 95

[Close]
BLAST of ClCG04G001530 vs. ExPASy TrEMBL
Match: A0A5A7U1K6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00690 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           KVD VSDGVADIDLCAVI +CNM+G+SKEWWVDT AT HICANKN+FT Y+ +S GEQLF
Sbjct: 164 KVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATHHICANKNLFTLYVSISNGEQLF 223

Query: 91  MANSSTLKVEG 102
           M +SST KV+G
Sbjct: 224 MGSSSTSKVKG 234

[Close]
BLAST of ClCG04G001530 vs. ExPASy TrEMBL
Match: A0A5D3BNM4 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00850 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSDGVADID+CAV+ +CNM+G+SKEWWVDT AT HICANKN+FTSY+ V+ GEQLF
Sbjct: 25  EVDEVSDGVADIDICAVVLECNMMGNSKEWWVDTGATCHICANKNLFTSYVSVANGEQLF 84

Query: 91  MANSSTLKVEG 102
           M NSS  KVEG
Sbjct: 85  MGNSSMSKVEG 95

[Close]
BLAST of ClCG04G001530 vs. ExPASy TrEMBL
Match: A0A5D3BN56 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00390 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.3e-23
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 31  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLF 90
           +VD VSDGVADIDLCAVI +CNM+ +SKEWWVDT ATRHIC NKN+F SY+ VS GEQLF
Sbjct: 25  EVDEVSDGVADIDLCAVILECNMMDNSKEWWVDTGATRHICVNKNLFISYVSVSNGEQLF 84

Query: 91  MANSSTLKVEG 102
           M NSST KV+G
Sbjct: 85  MGNSSTSKVKG 95

The following BLAST results are available for this feature:
BLAST of ClCG04G001530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066206.12.1e-2480.28pol polyprotein [Cucumis melo var. makuwa] >TYK13469.1 pol polyprotein [Cucumis ... [more]
KAA0042920.12.1e-2481.43pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis ... [more]
KAA0048117.12.3e-2376.06hypothetical protein E6C27_scaffold385G001960 [Cucumis melo var. makuwa] >TYJ964... [more]
TYK01391.15.2e-2374.65pol polyprotein [Cucumis melo var. makuwa][more]
KAA0062659.16.8e-2376.06pol polyprotein [Cucumis melo var. makuwa] >TYK01193.1 pol polyprotein [Cucumis ... [more]
BLAST of ClCG04G001530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG04G001530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7THY21.0e-2481.43Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G0014... [more]
A0A5D3CTI31.0e-2480.28Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75379G00... [more]
A0A5A7U1K61.1e-2376.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BNM42.5e-2374.65Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00850... [more]
A0A5D3BN563.3e-2376.06Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G003... [more]
BLAST of ClCG04G001530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47592:SF5OS08G0421300 PROTEINcoord: 33..100
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 33..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G001530.1ClCG04G001530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0015074 DNA integration
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0008270 zinc ion binding