ClCG04G000210 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G000210
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr04: 590281 .. 590574 (+)
RNA-Seq ExpressionClCG04G000210
SyntenyClCG04G000210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTTCTAGAATCATGCTCGATTTAGTACCAGTGCCTGCTCCAGCAACTTTGGAAGCTATAGTTCCTACTTTTAGAGAATCTATTGTCGAAGTACCTGAGTCATCAATTTCCCTTCCTCCAAGTTCTGACGGGTTTACTACTTTTGATGTTAGTGGAATAGGTGCAAGGGCACCAACCCCTGCCTCAACCTTTCTAAATTGCATGCCTAAAGGACCGATTAGATGGTCTGCTCCAAATCCAAAACACAATGATATGTTGGAATCAACTATATGCGCAAACTCAACATGA

mRNA sequence

ATGGCAACTTCTAGAATCATGCTCGATTTAGTACCAGTGCCTGCTCCAGCAACTTTGGAAGCTATAGTTCCTACTTTTAGAGAATCTATTGTCGAAGTACCTGAGTCATCAATTTCCCTTCCTCCAAGTTCTGACGGGTTTACTACTTTTGATGTTAGTGGAATAGGTGCAAGGGCACCAACCCCTGCCTCAACCTTTCTAAATTGCATGCCTAAAGGACCGATTAGATGGTCTGCTCCAAATCCAAAACACAATGATATGTTGGAATCAACTATATGCGCAAACTCAACATGA

Coding sequence (CDS)

ATGGCAACTTCTAGAATCATGCTCGATTTAGTACCAGTGCCTGCTCCAGCAACTTTGGAAGCTATAGTTCCTACTTTTAGAGAATCTATTGTCGAAGTACCTGAGTCATCAATTTCCCTTCCTCCAAGTTCTGACGGGTTTACTACTTTTGATGTTAGTGGAATAGGTGCAAGGGCACCAACCCCTGCCTCAACCTTTCTAAATTGCATGCCTAAAGGACCGATTAGATGGTCTGCTCCAAATCCAAAACACAATGATATGTTGGAATCAACTATATGCGCAAACTCAACATGA

Protein sequence

MATSRIMLDLVPVPAPATLEAIVPTFRESIVEVPESSISLPPSSDGFTTFDVSGIGARAPTPASTFLNCMPKGPIRWSAPNPKHNDMLESTICANST
Homology
BLAST of ClCG04G000210 vs. NCBI nr
Match: KAE8649707.1 (hypothetical protein Csa_012825 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 60/100 (60.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query: 1   MATSRIMLDLVPVPAPATLEAIVPTFRESIVEVPE--SSISLPPSSDGFTTFDVSGIGAR 60
           +AT+R MLDL   P     E+ +  FRESI EVPE  SSISLPP+SD F +FD +G+GAR
Sbjct: 25  IATTRGMLDLAQPPTTLE-ESTIRNFRESIAEVPESSSSISLPPTSDEFISFDPNGMGAR 84

Query: 61  APTPASTFLNCMPKGPIRWSAPNPKHN--DMLESTICANS 97
           AP PAS  L+C PKGPI WSAPNPKHN   +  STIC  S
Sbjct: 85  APLPAS-LLDCKPKGPIAWSAPNPKHNIPYVHISTICTTS 122

BLAST of ClCG04G000210 vs. NCBI nr
Match: KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-17
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 1   MATSRIMLDLVPVPAPATLEAIVPTFRESIVEVPE--SSISLPPSSDGFTTFDVSGIGAR 60
           MAT+R MLDL   P     E+ +  FRESI EVPE  SSISLPP+SD F +FD +G+GAR
Sbjct: 25  MATTRGMLDLAQPPTTLE-ESTIRNFRESIAEVPESSSSISLPPTSDEFISFDPNGMGAR 84

Query: 61  APTPASTFLNCMPKGPIRWSAPNPKHN 86
           AP PAS  L+C PKGPI WSAPNPKHN
Sbjct: 85  APLPAS-LLDCKPKGPIAWSAPNPKHN 109

BLAST of ClCG04G000210 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 6.8e-04
Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 1   MATSRIMLDLVPVPAPATL----------EAIVPTFRES--IVEVPESSISLPPSSDGFT 60
           MATSR ML + P P  +T            A  P   E+  +     SS S+PPS   F 
Sbjct: 25  MATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPLSEATLVAGFGSSSTSMPPSFGDFV 84

Query: 61  TFDV-SGIGARAPTPASTFLNCMPKGPIRWSAPNPKHN-DMLESTICAN 96
            F+V S + A  PTP     +C PKG +R+SAP+ + N + L S +C+N
Sbjct: 85  AFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDRRNSEPLISIVCSN 133

BLAST of ClCG04G000210 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 40/109 (36.70%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 1   MATSRIMLDLVPVPAPATL----------EAIVPTFRES--IVEVPESSISLPPSSDGFT 60
           MATSR ML + P P  +T            A  P   E+  +     SS S+PPS   F 
Sbjct: 25  MATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPLSEATLVAGFGSSSTSMPPSFGDFV 84

Query: 61  TFDV-SGIGARAPTPASTFLNCMPKGPIRWSAPNPKHN-DMLESTICAN 96
            F+V S + A  PTP     +C PKG +R+SAP+ + N + L S +C+N
Sbjct: 85  AFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDRRNSEPLISIVCSN 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649707.11.8e-1760.00hypothetical protein Csa_012825 [Cucumis sativus][more]
KAE8649709.14.1e-1764.37hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
TYK09256.16.8e-0436.70hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFX33.3e-0436.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G000210.1ClCG04G000210.1mRNA