ClCG03G011570 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G011570
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSqualene monooxygenase
LocationCG_Chr03: 22607137 .. 22608067 (+)
RNA-Seq ExpressionClCG03G011570
SyntenyClCG03G011570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGACAGAACGATCAAGACAATGATCAAGGGGGCCCGTCAAGCTCAAGTATGTCCCTTGAAAACATGGTAAAGAGTTTAGCTGACAGCAATATGAAATTTCAACAGGAGACTAGGAGTGGCATGGAGAGCTTGGGAAAACAAATTTCCTAATTGGCCACCACAGTAAGCAGGTTGGAGAAGAAACCTCGTAAGCTTCCCTCACAACAGGAGAAGAACCCGAGGGAGAACGTCGGTGCATTCACTTTAAGGAGTAGGAAGGAGCTCCCACCACCAATCATGTCTGTGGATGCCCTTACAGAGGTGGATTCTTCACCTTCTGAGCCAGTTGAAATATGAGGACCATCTCCTAAACCTAAAAAGGGAGTAAAATTCAATCTTCCTCCCACTGTAAATTCTAATTTAAGAAGTATTTTTCAATGTGTGAAGTGAAGGGTTGCTAATTTATTAATCCAATGTACTATAAAATTTTAAAACCTAGTATACAAGTGTAAGATACTATACTAAGGGAAAAAGTGATAACAAAATTTAAATATGATAAAAAATTTTAGTAATATGAAACATAAATATGAGACGTGATAAATCCCACTTGACTGTGTTTTGTCCTCATATGCAAAATTAATTCCAAAAGGAAACAAGATTTCTTTTATACTGATTTAGGGTAGCACTTTACCAGGCCAAGTTGAAGCAATAATGGGAGTGAGCCCTTGAAGATGGTGACCTGAAAGCGAATGATAAAAAGAGTCTGCAACTTCACTAGTTGCAAAGATGGATAGAAGGAAACGTGAATGACGGACGATGTGACTAAACGGTGGAGGATGCAAGTGCCACGACGACGACTTATAATGGAGGAGGTCGACGGCTTGGAGGACGAACAAACTTAAGGATGCCTTGTGCAAGAACGGACGACAACGAATCAGATGGCTGA

mRNA sequence

ATGGGAAGACAGAACGATCAAGACAATGATCAAGGGGGCCCGTCAAGCTCAAGTATGTCCCTTGAAAACATGGTAAAGAGTTTAGCTGACAGCAATATGAAATTTCAACAGGAGACTAGGATAAGCAGGTTGGAGAAGAAACCTCGTAAGCTTCCCTCACAACAGGAGAAGAACCCGAGGGAGAACGTCGGTGCATTCACTTTAAGGAGTAGGAAGGAGCTCCCACCACCAATCATGTCTGTGGATGCCCTTACAGAGGTGGATTCTTCACCTTCTGAGCCAGATGCAAGTGCCACGACGACGACTTATAATGGAGGAGGTCGACGGCTTGGAGGACGAACAAACTTAAGGATGCCTTGTGCAAGAACGGACGACAACGAATCAGATGGCTGA

Coding sequence (CDS)

ATGGGAAGACAGAACGATCAAGACAATGATCAAGGGGGCCCGTCAAGCTCAAGTATGTCCCTTGAAAACATGGTAAAGAGTTTAGCTGACAGCAATATGAAATTTCAACAGGAGACTAGGATAAGCAGGTTGGAGAAGAAACCTCGTAAGCTTCCCTCACAACAGGAGAAGAACCCGAGGGAGAACGTCGGTGCATTCACTTTAAGGAGTAGGAAGGAGCTCCCACCACCAATCATGTCTGTGGATGCCCTTACAGAGGTGGATTCTTCACCTTCTGAGCCAGATGCAAGTGCCACGACGACGACTTATAATGGAGGAGGTCGACGGCTTGGAGGACGAACAAACTTAAGGATGCCTTGTGCAAGAACGGACGACAACGAATCAGATGGCTGA

Protein sequence

MGRQNDQDNDQGGPSSSSMSLENMVKSLADSNMKFQQETRISRLEKKPRKLPSQQEKNPRENVGAFTLRSRKELPPPIMSVDALTEVDSSPSEPDASATTTTYNGGGRRLGGRTNLRMPCARTDDNESDG
Homology
BLAST of ClCG03G011570 vs. NCBI nr
Match: XP_038877406.1 (uncharacterized protein LOC120069694 [Benincasa hispida])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 48/104 (46.15%), Postives = 58/104 (55.77%), Query Frame = 0

Query: 2   GRQNDQ-DNDQGGPSSSSMSLENMVKSLADSNMKFQQETR-------------------- 61
           G QN+Q     G PS S MSLE++VKSLAD++ KFQQ+T+                    
Sbjct: 110 GGQNEQAQPHHGAPSGSGMSLEDIVKSLADNSFKFQQDTQHFQQDTKKAIEALGTQVSQL 169

Query: 62  ---ISRLEKKPRKLPSQQEKNPRENVGAFTLRSRKELPPPIMSV 82
              ISRLEK+  KL SQ +    ENV A TLRS KEL PP+ SV
Sbjct: 170 ATSISRLEKQSGKLSSQPKSILSENVSAITLRSGKELEPPVESV 213

BLAST of ClCG03G011570 vs. NCBI nr
Match: XP_021763808.1 (uncharacterized protein LOC110728473 [Chenopodium quinoa])

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-05
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 19 MSLENMVKSLADSNMKFQQETR--ISRLE-KKPRKLPSQQEKNPRENVGAFTLRSRKELP 78
          MSLE++VK++AD+ + FQQETR  +  LE +   KLPSQ E+NP+EN  A +LRS K+L 
Sbjct: 1  MSLEDIVKAMADNTLHFQQETRSGLKNLENQNSNKLPSQPERNPKENASAISLRSGKQLE 60

Query: 79 PPIMSVDALTE 87
           P    + L E
Sbjct: 61 IPTKKTEGLAE 71

BLAST of ClCG03G011570 vs. NCBI nr
Match: XP_021738280.1 (uncharacterized protein LOC110704778 [Chenopodium quinoa] >XP_021738281.1 uncharacterized protein LOC110704778 [Chenopodium quinoa])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 0

Query: 7   QDNDQGGPSSSSMSLENMVKSLADSNMKFQQETR---------ISRL--------EKKPR 66
           Q+     P S SMSLE++VK++AD+ + FQQETR         +S+L         +   
Sbjct: 353 QNQQVSQPQSGSMSLEDIVKAMADNTLHFQQETRSGLKNLENQVSQLANTVGKLQAQNSN 412

Query: 67  KLPSQQEKNPRENVGAFTLRSRKELPPPIMSVDAL 85
           KLPSQ E+NP+ENV A +LRS K+L  P    + L
Sbjct: 413 KLPSQPERNPKENVSAISLRSGKQLEVPTKKTEEL 447

BLAST of ClCG03G011570 vs. NCBI nr
Match: XP_019107873.1 (PREDICTED: uncharacterized protein LOC104906241 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-04
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 0

Query: 14  PSSSSMSLENMVKSLADSNMKFQQETR----------------ISRLE-KKPRKLPSQQE 73
           P +  MSLE +VKS+A S ++FQQETR                + RLE +   K PSQ E
Sbjct: 365 PQAGGMSLEEIVKSMASSTLQFQQETRSGLKNLENQVSQLASTVGRLEAQNSHKFPSQTE 424

Query: 74  KNPRENVGAFTLRSRKELPPP 78
           KNPREN  A +LRS K+L  P
Sbjct: 425 KNPRENANAISLRSGKKLEEP 445

BLAST of ClCG03G011570 vs. NCBI nr
Match: XP_024990573.1 (uncharacterized protein LOC112524859 [Cynara cardunculus var. scolymus])

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 14  PSSSSMSLENMVKSLADSNMKFQQETR---------ISRLEKKPRKLPSQQEKNPRENVG 73
           PS S MSLE++VKS+A + +KFQQET+         + +L  K  KLPSQ E NP+ NV 
Sbjct: 417 PSGSGMSLEDLVKSMAANMVKFQQETQASIQDLQATVGQLANK-GKLPSQTEMNPKANVS 476

Query: 74  AFTLRSRKEL 75
           A TLRS KEL
Sbjct: 477 AVTLRSGKEL 485

BLAST of ClCG03G011570 vs. ExPASy TrEMBL
Match: A0A6A2ZNL1 (Squalene monooxygenase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110813pilonHSYRG00278 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-04
Identity = 42/90 (46.67%), Postives = 51/90 (56.67%), Query Frame = 0

Query: 15   SSSSMSLENMVKSLADSNMKFQQETR----------------ISRLEKKPRKLPSQQEKN 74
            S   MSLE +VKSLA +  +FQQETR                ++RLE +  KLPSQ   N
Sbjct: 1277 SKPGMSLEEIVKSLATNTQQFQQETRTSIQNLENQVSQLASSVNRLESQ-GKLPSQTIVN 1336

Query: 75   PRENVGAFTLRSRKEL--PPPIMSVDALTE 87
            P++NV A TLRSRKEL  P P+    AL E
Sbjct: 1337 PKQNVSAITLRSRKELKEPSPLAHGRALEE 1365

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877406.12.6e-0646.15uncharacterized protein LOC120069694 [Benincasa hispida][more]
XP_021763808.14.8e-0549.30uncharacterized protein LOC110728473 [Chenopodium quinoa][more]
XP_021738280.11.8e-0441.05uncharacterized protein LOC110704778 [Chenopodium quinoa] >XP_021738281.1 unchar... [more]
XP_019107873.13.1e-0445.68PREDICTED: uncharacterized protein LOC104906241 [Beta vulgaris subsp. vulgaris][more]
XP_024990573.14.1e-0452.86uncharacterized protein LOC112524859 [Cynara cardunculus var. scolymus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A2ZNL15.8e-0446.67Squalene monooxygenase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110813pilonH... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G011570.1ClCG03G011570.1mRNA