ClCG03G009877 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G009877
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 15772283 .. 15772924 (-)
RNA-Seq ExpressionClCG03G009877
SyntenyClCG03G009877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCGCCTTGTTCGTGTCATGTCATATTCATGTCTCGTATCCGTATCTGTGCTTCTTAGTTTACTTGTAGGTTAACGGTTATGAATTTTTTGGTCCTTTTTTCTGAACTTTTCCTAATCAATAGAAGTTTTAGTTTTAAAAGAACAGTTGTGTTTTGAGATGAAAAGCGAAGTCACTAAGCACATAGTTGACAAAGGCCCAAGAATTTGGAGGTTTAGGGTGGAAAAACATGCTTTGTGGAGAAGGGTCATAGCTGCCAAGTTCGGCTCCTCCATTTGTGACAACAAAGCCGAATCCCGCTCTTTATCCACTGCCAAAGGCCCATGGAAAGCCCTGTCTATCCTTCAACCTCTGGTGGATGAACACACTGCTGCTATCCTAATCTCTTTGATCTATCTCTTGCTATGGAGGCCACGGTTCTTGACCTATGGTACTCTTCAGGGGGCTGTTGGGATCTCCATCTTCGTAGGTATCTAAATGATTTGGAAATTGTTGAATGGGCTGATATGTCTCATCTGGTTTCTAACTATCAGCCCCTCCAATCTGTAGATAAATGGTATTGGAAACCCGATCCGTATGGGGTTTTCTCCACTAAATCTTGGATTGGTCTCACCAATCGCAATAGTACTAATGTTTTT

mRNA sequence

ATGGTGTCGCCTTGTTCGTGTCATGTCATATTCATGTCTCGTATCCGTATCTGTGCTTCTTAGTTTACTTGTAGGTTAACGGTTATGAATTTTTTGGTCCTTTTTTCTGAACTTTTCCTAATCAATAGAAGTTTTAGTTTTAAAAGAACAGTTGTGTTTTGAGATGAAAAGCGAAGTCACTAAGCACATAGTTGACAAAGGCCCAAGAATTTGGAGGTTTAGGGTGGAAAAACATGCTTTGTGGAGAAGGGTCATAGCTGCCAAGTTCGGCTCCTCCATTTGTGACAACAAAGCCGAATCCCGCTCTTTATCCACTGCCAAAGGCCCATGGAAAGCCCTGTCTATCCTTCAACCTCTGGTGGATGAACACACTGCTGCTATCCTAATCTCTTTGATCTATCTCTTGCTATGGAGGCCACGGTTCTTGACCTATGGTACTCTTCAGGGGGCTGTTGGGATCTCCATCTTCGTAGGTATCTAAATGATTTGGAAATTGTTGAATGGGCTGATATGTCTCATCTGGTTTCTAACTATCAGCCCCTCCAATCTGTAGATAAATGGTATTGGAAACCCGATCCGTATGGGGTTTTCTCCACTAAATCTTGGATTGGTCTCACCAATCGCAATAGTACTAATGTTTTT

Coding sequence (CDS)

ATGAAAAGCGAAGTCACTAAGCACATAGTTGACAAAGGCCCAAGAATTTGGAGGTTTAGGGTGGAAAAACATGCTTTGTGGAGAAGGGTCATAGCTGCCAAGTTCGGCTCCTCCATTTGTGACAACAAAGCCGAATCCCGCTCTTTATCCACTGCCAAAGGCCCATGGAAAGCCCTGTCTATCCTTCAACCTCTGGTGGATGAACACACTGCTGCTATCCTAATCTCTTTGATCTATCTCTTGCTATGGAGGCCACGGTTCTTGACCTATGGTACTCTTCAGGGGGCTGTTGGGATCTCCATCTTCGTAGGTATCTAA

Protein sequence

MKSEVTKHIVDKGPRIWRFRVEKHALWRRVIAAKFGSSICDNKAESRSLSTAKGPWKALSILQPLVDEHTAAILISLIYLLLWRPRFLTYGTLQGAVGISIFVGI
Homology
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BLAST of ClCG03G009877 vs. NCBI nr
Match: KAG7020776.1 (hypothetical protein SDJN02_17464, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 17 WRFRVEKHALWRRVIAAKFGSSICDNKAESRSLSTAKGPWKALSILQPLVDEHTAAIL 75
          WRF  EK A+WR+VIA K+ SS  + K  S SL+++K PWK++  L+ LV  H ++ +
Sbjct: 3  WRFNQEKDAIWRKVIATKYESSRFNQKLGSISLASSKEPWKSIDKLKHLVYNHISSTI 60

The following BLAST results are available for this feature:
BLAST of ClCG03G009877 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020776.12.5e-0444.83hypothetical protein SDJN02_17464, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of ClCG03G009877 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G009877 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G009877 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G009877.1ClCG03G009877.1mRNA