ClCG03G009140 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G009140
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transmembrane protein 50A
Location	CG_Chr03: 11848838 .. 11850286 (+)
RNA-Seq Expression	ClCG03G009140
Synteny	ClCG03G009140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGCTCTTCCTCTCAACTCATGGGGCAGAGAGCCCACTGGGAGTGTTTGGGGCAAGAACACCAAAGAGTTGGGAACTTTTGGGCCCACAGGGTAAGAAGTTAACAAGACATAAAATTAATGTTTTTTTAGTCCGGGGTCAATGAACTCCTTAGGCTAATTAAGAAGTGGAGTTCACAACTCCACATCCCCCAACTCCTTGAGCCAAACACTAGGGGGTCAAGAATTTCCTCTTTTGGGATGCCAATAATGCCCCATTTCTCCTTATTCCAGCTTTTCAGCAACGATTTATCCTCTTCAACTTCTGCAGAAACACAAAACCCGGCCAGCCTTGAAGATTTAATTTCTTCCATTCACTGTCAAAGAATTTCATGAAGCTTTTATTGCTCAACCACAATTTCAAAGCAAAATGGGTCCCCAAGAAACTTTGTTTGTCACCATAACAATGGGAAAGTGATTGAAGCTCTGGATGAGGGAACTTCTCCAACCAGTCTCTCAAGGTGGGAAAGGAAAGATTGCTCTCTACCATTCAACTTGGGGGAGATTTAAAAACGAATTAGCTTGGACCTGTTCTTTTTTTCTCTTAGGGCATCTGGAGACAGTTTCCTGCTGTGCTCACAGCCCAGTAGCGAATATTCTGGATATCTGCTTATTGAAGGTGTGAGCTGTAGTTCATTTTTCCCATTTTTTCCTATTCTCACGTCCCTCGCTTTTGCTATTAGACTGCAATATTGGTTCATGTTAGGACATGATGGATTGATATGCTAGTTATTTGGCAATTTTTACTTGGAATATCATGGAAATAACCCTCTGAAAATATCAAGTTTTAGACCTATAAGCAAACGAAAGTTCGATGAATCCTCGGATAATATTGAGAATTTGATGTTTGTGTCGATGTGGTACTAGTATATTGCTGTAACAGAACTGACGTTTCTCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTAAAAACTGGGCCGTCAGTGTGGACAGGAGTTGCAGGAGTATTACAGTGTGTGTTTGTGTTGGTTAGGTAAGTGTCCCTTCCACATTTTGATCATCTTAATTCTTATTTTTCCTATTTGTCTTTTATTTGGATTTGTGCCAACAAACATTAGCTACTTTTATTCCACCGTTTGTTGTGGAATCTTTCCGCAAGGCAACTTTGTGAAAGAAGAGTTTTAGGGGGTTCTTTGTTGTGTTGTTCATCTTGATTTCTGAGCATGACCGATACACCGTAACATCTGTATTCTGTTCTCCCTAAATCATTCCCTACAAAGTTTGCTTACAAAAATTGGTTTCATTCCTTTTTATTCTGTTTTTTCTGAAATACTGCTTTGTTACAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAA

mRNA sequence

ATGAGTAGCTCTTCCTCTCAACTCATGGGGCAGAGAGCCCACTGGGAGTGTTTGGGGCAAGAACACCAAAGAGTTGGGAACTTTTGGGCCCACAGGCAAAATGGGTCCCCAAGAAACTTTGTTTGTCACCATAACAATGGGAAAGTGATTGAAGCTCTGGATGAGGGAACTTCTCCAACCAGTCTCTCAAGGGCATCTGGAGACAGTTTCCTGCTGTGCTCACAGCCCAGTAGCGAATATTCTGGATATCTGCTTATTGAAGTATATTGCTGTAACAGAACTGACGTTTCTCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTAAAAACTGGGCCGTCAGTGTGGACAGGAGTTGCAGGAGTATTACAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAA

Coding sequence (CDS)

ATGAGTAGCTCTTCCTCTCAACTCATGGGGCAGAGAGCCCACTGGGAGTGTTTGGGGCAAGAACACCAAAGAGTTGGGAACTTTTGGGCCCACAGGCAAAATGGGTCCCCAAGAAACTTTGTTTGTCACCATAACAATGGGAAAGTGATTGAAGCTCTGGATGAGGGAACTTCTCCAACCAGTCTCTCAAGGGCATCTGGAGACAGTTTCCTGCTGTGCTCACAGCCCAGTAGCGAATATTCTGGATATCTGCTTATTGAAGTATATTGCTGTAACAGAACTGACGTTTCTCTTGACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAGTAGTAAAAACTGGGCCGTCAGTGTGGACAGGAGTTGCAGGAGTATTACAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACTCGGAGTAA

Protein sequence

MSSSSSQLMGQRAHWECLGQEHQRVGNFWAHRQNGSPRNFVCHHNNGKVIEALDEGTSPTSLSRASGDSFLLCSQPSSEYSGYLLIEVYCCNRTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSHSE

Homology

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BLAST of ClCG03G009140 vs. NCBI nr
Match: KAG7016525.1 (hypothetical protein SDJN02_21634 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 7.8e-29
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 92  NRTDVSLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLV 151
           N TD SLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLV
Sbjct: 121 NYTDASLDNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLV 180

Query: 152 SGLIYWTSHSE 163
           SGLIYWTSHSE
Sbjct: 181 SGLIYWTSHSE 191

[Close]

BLAST of ClCG03G009140 vs. NCBI nr
Match: XP_022993057.1 (transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.6 bits (314), Expect = 4.0e-25
Identity = 65/89 (73.03%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 80  YSGYLLIEVYCCNRTDVSL------DNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG 139
           ++ +  +   C  R D+        + RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG
Sbjct: 47  FASFAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG 106

Query: 140 PSVWTGVAGVLQCVFVLVSGLIYWTSHSE 163
           PSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 107 PSVWTGVAGVLQCVFVLVSGLIYWTSHSE 135

[Close]

BLAST of ClCG03G009140 vs. NCBI nr
Match: XP_022938351.1 (transmembrane protein 50A-like [Cucurbita moschata] >KAG6579003.1 Transmembrane protein 50A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 8.9e-25
Identity = 65/79 (82.28%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 90  CCNRTDVSL------DNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGV 149
           C  R D+        + RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGV
Sbjct: 57  CVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGV 116

Query: 150 LQCVFVLVSGLIYWTSHSE 163
           LQCVFVLVSGLIYWTSHSE
Sbjct: 117 LQCVFVLVSGLIYWTSHSE 135

[Close]

BLAST of ClCG03G009140 vs. NCBI nr
Match: XP_008460472.1 (PREDICTED: transmembrane protein 50A [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 101 RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 160
           RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH
Sbjct: 74  RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 133

Query: 161 SE 163
           SE
Sbjct: 134 SE 135

[Close]

BLAST of ClCG03G009140 vs. NCBI nr
Match: XP_038874577.1 (transmembrane protein 50A [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 101 RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 160
           RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH
Sbjct: 74  RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 133

Query: 161 SE 163
           SE
Sbjct: 134 SE 135

[Close]

BLAST of ClCG03G009140 vs. ExPASy TrEMBL
Match: A0A6J1JRP9 (transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-25
Identity = 65/89 (73.03%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 80  YSGYLLIEVYCCNRTDVSL------DNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG 139
           ++ +  +   C  R D+        + RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG
Sbjct: 47  FASFAALMFNCVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG 106

Query: 140 PSVWTGVAGVLQCVFVLVSGLIYWTSHSE 163
           PSVWTGVAGVLQCVFVLVSGLIYWTSHSE
Sbjct: 107 PSVWTGVAGVLQCVFVLVSGLIYWTSHSE 135

[Close]

BLAST of ClCG03G009140 vs. ExPASy TrEMBL
Match: A0A6J1FCW9 (transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.3e-25
Identity = 65/79 (82.28%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 90  CCNRTDVSL------DNRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGV 149
           C  R D+        + RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGV
Sbjct: 57  CVRREDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGV 116

Query: 150 LQCVFVLVSGLIYWTSHSE 163
           LQCVFVLVSGLIYWTSHSE
Sbjct: 117 LQCVFVLVSGLIYWTSHSE 135

[Close]

BLAST of ClCG03G009140 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.6e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 101 RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 160
           RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH
Sbjct: 74  RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 133

Query: 161 SE 163
           SE
Sbjct: 134 SE 135

[Close]

BLAST of ClCG03G009140 vs. ExPASy TrEMBL
Match: A0A6J1CJN8 (transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 101 RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 160
           RLKLWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH
Sbjct: 74  RLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 133

Query: 161 SE 163
           SE
Sbjct: 134 SE 135

[Close]

BLAST of ClCG03G009140 vs. ExPASy TrEMBL
Match: D6BRE9 (Transmembrane protein 50a, putative OS=Jatropha curcas OX=180498 GN=JCGZ_12032 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.8e-24
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 101 RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 160
           RLKLWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTG AGVLQCVFVL+SGLIYWTSH
Sbjct: 74  RLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGTAGVLQCVFVLISGLIYWTSH 133

Query: 161 SE 163
           SE
Sbjct: 134 SE 135

[Close]

BLAST of ClCG03G009140 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 115.2 bits (287), Expect = 5.1e-26
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 101 RLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCVFVLVSGLIYWTSH 160
           RLKLWLF AYVV+FVSLAASVGLLIQDSVVKTGPS WTGVAGV QCVFVL+SGL+YWTSH
Sbjct: 74  RLKLWLFIAYVVAFVSLAASVGLLIQDSVVKTGPSTWTGVAGVFQCVFVLISGLMYWTSH 133

Query: 161 SE 163
           SE
Sbjct: 134 SE 135

The following BLAST results are available for this feature:

BLAST of ClCG03G009140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016525.1	7.8e-29	97.18	hypothetical protein SDJN02_21634 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022993057.1	4.0e-25	73.03	transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane prote...	[more]
XP_022938351.1	8.9e-25	82.28	transmembrane protein 50A-like [Cucurbita moschata] >KAG6579003.1 Transmembrane ...	[more]
XP_008460472.1	2.0e-24	100.00	PREDICTED: transmembrane protein 50A [Cucumis melo]	[more]
XP_038874577.1	2.0e-24	100.00	transmembrane protein 50A [Benincasa hispida]	[more]

BLAST of ClCG03G009140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G009140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JRP9	1.9e-25	73.03	transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1	[more]
A0A6J1FCW9	4.3e-25	82.28	transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=...	[more]
A0A1S3CCJ8	9.6e-25	100.00	transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1	[more]
A0A6J1CJN8	1.3e-24	98.39	transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV...	[more]
D6BRE9	4.8e-24	95.16	Transmembrane protein 50a, putative OS=Jatropha curcas OX=180498 GN=JCGZ_12032 P...	[more]

BLAST of ClCG03G009140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36980.1	5.1e-26	90.32	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007919	Uncharacterised protein family UPF0220	PFAM	PF05255	UPF0220	coord: 99..160 e-value: 2.6E-11 score: 43.4
IPR007919	Uncharacterised protein family UPF0220	PANTHER	PTHR13180	SMALL MEMBRANE PROTEIN-RELATED	coord: 99..162
None	No IPR available	PANTHER	PTHR13180:SF3	OS02G0566900 PROTEIN	coord: 99..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G009140.2	ClCG03G009140.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds