ClCG03G009110 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G009110
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transmembrane protein 50A
Location	CG_Chr03: 11836470 .. 11837130 (+)
RNA-Seq Expression	ClCG03G009110
Synteny	ClCG03G009110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAGGTAGATGGGAGTTTTAACATTCGGCAGGAAAAGGGTGTGAGCCTGTGAGGTGTGCGATCATTCAGTTCACATCGCACTAGCCTCTCCAATTCGACCCGCTTCAAACCACTTGCACAAGGAGAAGGCAATAGAAAGAACCCACAAATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTTTGGGTTGATGCCGTTGTCTGCAGTTCTGTCGCCGTCTCCTTCGTCCACTACCTCCCAGGTTCTTTATTCATCTGCGAGTCCACTCCATGTATAATTTGCGCTTAGGGTTTTTGACGGTGCTTCGGTATTGGGGTTGTAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGGTGAGAAGTTTATGCTTTATCTACTCACCTATCTCTCTTTTCTTTGCTTTCTGCATCTTCTATTGTTTAAATCTGTCACTAATCATGTCGCGACGCTAATCATTCGTGTCGATTGAAAGCAATGTCACCGTGTTCTTCTTCGACAAGGTTATGTGGAATGTGATTTAGTACCTGCTAGGATTATTCTCCCCGAATGTGTTAGGATCTTA

mRNA sequence

GGGAAGGTAGATGGGAGTTTTAACATTCGGCAGGAAAAGGGTGTGAGCCTGTGAGGTGTGCGATCATTCAGTTCACATCGCACTAGCCTCTCCAATTCGACCCGCTTCAAACCACTTGCACAAGGAGAAGGCAATAGAAAGAACCCACAAATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTTTGGGTTGATGCCGTTGTCTGCAGTTCTGTCGCCGTCTCCTTCGTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGGTGAGAAGTTTATGCTTTATCTACTCACCTATCTCTCTTTTCTTTGCTTTCTGCATCTTCTATTGTTTAAATCTGTCACTAATCATGTCGCGACGCTAATCATTCGTGTCGATTGAAAGCAATGTCACCGTGTTCTTCTTCGACAAGGTTATGTGGAATGTGATTTAGTACCTGCTAGGATTATTCTCCCCGAATGTGTTAGGATCTTA

Coding sequence (CDS)

ATGGATTTGGCGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCGGAGCTGTGTTCGGCGCCGGATGGTGGTTTTGGGTTGATGCCGTTGTCTGCAGTTCTGTCGCCGTCTCCTTCGTCCACTACCTCCCAGGTATTTTTGCTTCTTTTGCGGCTCTGATGTTCAATTGCGTTCGCAAAGAAGACATCGATTATTCTCCATACGAGGAGGGCGAATGGAGGTGA

Protein sequence

MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWR

Homology

[Close]

BLAST of ClCG03G009110 vs. NCBI nr
Match: XP_004140320.1 (transmembrane protein 50A [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 3.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. NCBI nr
Match: KAA0067394.1 (transmembrane protein 50A [Cucumis melo var. makuwa] >TYK26535.1 transmembrane protein 50A [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 3.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. NCBI nr
Match: KGN50994.1 (hypothetical protein Csa_008144 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 3.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. NCBI nr
Match: XP_008460472.1 (PREDICTED: transmembrane protein 50A [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 3.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. NCBI nr
Match: XP_038874577.1 (transmembrane protein 50A [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 5.1e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFIHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. ExPASy TrEMBL
Match: A0A5D3DT37 (Transmembrane protein 50A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001240 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. ExPASy TrEMBL
Match: A0A0A0KQ70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387940 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. ExPASy TrEMBL
Match: A0A6J1JKY2 (transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.2e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. ExPASy TrEMBL
Match: A0A6J1JRP9 (transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.2e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVR+
Sbjct: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRR 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPYEEGEWR
Sbjct: 61 EDIDYSPYEEGEWR 74

[Close]

BLAST of ClCG03G009110 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-35
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60
          MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS  ALMFNCVRK
Sbjct: 1  MDLAELWAIFGPGFSGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGALMFNCVRK 60

Query: 61 EDIDYSPYEEGEWR 75
          EDIDYSPY+EGEWR
Sbjct: 61 EDIDYSPYDEGEWR 74

The following BLAST results are available for this feature:

BLAST of ClCG03G009110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140320.1	3.9e-36	100.00	transmembrane protein 50A [Cucumis sativus]	[more]
KAA0067394.1	3.9e-36	100.00	transmembrane protein 50A [Cucumis melo var. makuwa] >TYK26535.1 transmembrane p...	[more]
KGN50994.1	3.9e-36	100.00	hypothetical protein Csa_008144 [Cucumis sativus]	[more]
XP_008460472.1	3.9e-36	100.00	PREDICTED: transmembrane protein 50A [Cucumis melo]	[more]
XP_038874577.1	5.1e-36	98.65	transmembrane protein 50A [Benincasa hispida]	[more]

BLAST of ClCG03G009110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G009110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DT37	1.9e-36	100.00	Transmembrane protein 50A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KQ70	1.9e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387940 PE=3 SV=1	[more]
A0A1S3CCJ8	1.9e-36	100.00	transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1	[more]
A0A6J1JKY2	4.2e-36	98.65	transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 ...	[more]
A0A6J1JRP9	4.2e-36	98.65	transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1	[more]

BLAST of ClCG03G009110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36980.1	1.2e-35	86.49	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007919	Uncharacterised protein family UPF0220	PFAM	PF05255	UPF0220	coord: 13..64 e-value: 2.5E-9 score: 36.9
IPR007919	Uncharacterised protein family UPF0220	PANTHER	PTHR13180	SMALL MEMBRANE PROTEIN-RELATED	coord: 3..74
None	No IPR available	PANTHER	PTHR13180:SF3	OS02G0566900 PROTEIN	coord: 3..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G009110.1	ClCG03G009110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0016021	integral component of membrane