ClCG03G004550 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G004550
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionankyrin repeat-containing protein NPR4-like
LocationCG_Chr03: 4892569 .. 4894053 (+)
RNA-Seq ExpressionClCG03G004550
SyntenyClCG03G004550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGTACTAAAACGCCAGAACACAAGACTGATAGCTGGGCTAGATCCAAACTCCGCAGCTTCAACTTTTCTTGTAAGTCTTCTGTTTTCTTTTTCTTTTTCTTTTCTTTTCCTATAATTTTTTCTGTTAACATTTTTCTTTTTTCTTTCTTTTTTTTTTCTTTTGGACACACTAAGCATAAATACTTAAATCTATATTGAATATATTAACCTTAGGATCATTCATGTCAAATTATCTAGAATAAATAAGATACCGAATTCCATTGAGAGATTGATGATAGTTACAAAATGACTATTATCTTCTTCAACCAAAATTTTGTATGTCTTTAGTAGGATCTCCGTTTACATGAGATTAGAAAGATTGGGTGTGTATTGTTTTAATATATAAGTGACCATAGACTCTCTTTATATACTAGTTTAATTAGGATTCCATTATACACTAATTAACTATGAATGAGCTTCTATCCATTCAGTTCATACTCAATTGGGAAACTAAGATCTTAATTAAATCACATAATAGAGTTCAATCTAATAAAATAACCAATGTGATAAAATACTAATTCACATACATAGCCCATACTTTAATTATATCTAATTGCTTAGCAAATTTGTTTCAATAATTCAGGTGGATCGAGAAAAATATATTTGACCAAACCAACAAATTGTGTCATGAAAACATATATTTTTGTGTTTTTAAATTGAAGAATCCCTTTAGCTCTTCAAATCTACAAATTTTACATTCTTACGATGAAAGTGAAATGGAGAAGAAAAAAATAAAGAATAAGGAGTAATCGACCCAAAAATTTACGTGGTATACTAATAGTGTGTTAGCTGTGTCTATCAATAGAAGAAGAGAGTAAAAAAAATATATCAAATAGACGTTAACAAGATTGGAGGGTTTTACATATAATACCCCACTAAACTTTGGCCCCAAAATCATATATAACATATTAGGCATATACACAACACACACATTACACACATTGGCAAGATTATTTGCCTATATTATTTTTATTGTCAGCGATAATCCTCAACTCATAGAAACTATAGCTCACTCCATCATAAAAGTAACCCACTTAGGACAACGATGATGCATTCCAAAAATTTACTTCACACGTTAACAAACTCTGTTGAAACTTTTGGTGCAACTCTTAAAAAGGTTAATTAAGAGTAGTTGTTTGCTGATTAGGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

mRNA sequence

ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGTACTAAAACGCCAGAACACAAGACTGATAGCTGGGCTAGATCCAAACTCCGCAGCTTCAACTTTTCTTGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

Coding sequence (CDS)

ATGATGCCATTGACTCGAAAGCCTTCTTCTTCTCCTCCTTCTTCTTCACCCAATAAGCCCACCCTTCACCCTCTTGACCCCAAGGTTGTTAGGTGGTCGGCGTCGGTTACCGGTGGTGATTCCGATGGCAGAGAGAACCAGAATGGGATCAACAATGACAATGAGTTTGAGGCGGGTGAGTCGCCGGCGCAAGGAGATGAGGAAAATCAGCAGCAGCTTGTAATTAGTACTAAAACGCCAGAACACAAGACTGATAGCTGGGCTAGATCCAAACTCCGCAGCTTCAACTTTTCTTGGAGAAGAAGTAGAATGAACAGTAGTCGTTCACTTCGTGCTAAGATTCATCAAGCTGCATTAAAAGGGGACTAG

Protein sequence

MMPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGESPAQGDEENQQQLVISTKTPEHKTDSWARSKLRSFNFSWRRSRMNSSRSLRAKIHQAALKGD
Homology
BLAST of ClCG03G004550 vs. NCBI nr
Match: XP_022137142.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-14
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 1   MMPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGE 60
           MMPLTRKP SS  S+          DP+ VRWS +VT GD+D   +       ++ EA +
Sbjct: 1   MMPLTRKPLSSSQSN----------DPRAVRWSETVTDGDADDAGDGEDHRGIDDLEAAD 60

Query: 61  SPAQGDEENQQQLVISTKTPEH-KTD-SWARSKLRSFNFSWRRSRMNSSRSLRAKIHQAA 120
           SPAQGDE  QQ ++IST+T +  K D  WA+SK+ SF FSW  SR   +R LR +++QAA
Sbjct: 61  SPAQGDENQQQLVMISTRTSQSPKIDLRWAKSKIPSFRFSW--SRRIDNRPLRVRLYQAA 112

Query: 121 LKGD 123
           LKGD
Sbjct: 121 LKGD 112

BLAST of ClCG03G004550 vs. NCBI nr
Match: XP_022994352.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita maxima])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = 0

Query: 1   MMPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINN--DNEFEA 60
           M P TR+PS+S  SS+ + P  H  D K VRWS  VTG DS   ++ NG+NN  D +FE 
Sbjct: 1   MKPFTRRPSTS--SSTKSTPGRH--DGKAVRWSEPVTGVDSAAVKDHNGVNNDEDEDFEV 60

Query: 61  G--ESPAQGDEENQQQLVISTK--TPEHKTDSWARSKLRSFNFSWRRSRMNSSRSLRAKI 120
           G  ESPA+GDEEN   L I  K   P+ K  SW  SK  SF FS  +SR   +R LR ++
Sbjct: 61  GEDESPARGDEENPLPLEIYGKPLDPKTKDLSWPMSKFHSFRFS--KSRRMDNRPLRVQL 120

Query: 121 HQAALKGD 123
           +QAA  GD
Sbjct: 121 YQAAQNGD 122

BLAST of ClCG03G004550 vs. ExPASy TrEMBL
Match: A0A0A0LUR7 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 2   MPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGES 61
           MPLT KP SS  SSSPNKPTL P DPK VRWS SVTGGDSD R+ Q+GI++D+EFE GE+
Sbjct: 1   MPLTHKPPSS--SSSPNKPTLDPHDPKAVRWSESVTGGDSDSRKKQHGIHDDDEFEEGET 60

Query: 62  PAQGDEENQQQLVISTKTPE-HKTD-SWARSKLRSFNFSWRRSRMNSSRSLRAKIHQAAL 121
           P QGDEENQ QLVI ++TPE  K D SWARS            R++ +RSLRAK+HQAAL
Sbjct: 61  PEQGDEENQHQLVIGSRTPEPPKNDMSWARS-----------IRVDDNRSLRAKMHQAAL 110

Query: 122 KGD 123
           KGD
Sbjct: 121 KGD 110

BLAST of ClCG03G004550 vs. ExPASy TrEMBL
Match: A0A6J1C7F7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111008689 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 1   MMPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINNDNEFEAGE 60
           MMPLTRKP SS  S+          DP+ VRWS +VT GD+D   +       ++ EA +
Sbjct: 1   MMPLTRKPLSSSQSN----------DPRAVRWSETVTDGDADDAGDGEDHRGIDDLEAAD 60

Query: 61  SPAQGDEENQQQLVISTKTPEH-KTD-SWARSKLRSFNFSWRRSRMNSSRSLRAKIHQAA 120
           SPAQGDE  QQ ++IST+T +  K D  WA+SK+ SF FSW  SR   +R LR +++QAA
Sbjct: 61  SPAQGDENQQQLVMISTRTSQSPKIDLRWAKSKIPSFRFSW--SRRIDNRPLRVRLYQAA 112

Query: 121 LKGD 123
           LKGD
Sbjct: 121 LKGD 112

BLAST of ClCG03G004550 vs. ExPASy TrEMBL
Match: A0A6J1JVK1 (ankyrin repeat-containing protein ITN1-like OS=Cucurbita maxima OX=3661 GN=LOC111490098 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.1e-12
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = 0

Query: 1   MMPLTRKPSSSPPSSSPNKPTLHPLDPKVVRWSASVTGGDSDGRENQNGINN--DNEFEA 60
           M P TR+PS+S  SS+ + P  H  D K VRWS  VTG DS   ++ NG+NN  D +FE 
Sbjct: 1   MKPFTRRPSTS--SSTKSTPGRH--DGKAVRWSEPVTGVDSAAVKDHNGVNNDEDEDFEV 60

Query: 61  G--ESPAQGDEENQQQLVISTK--TPEHKTDSWARSKLRSFNFSWRRSRMNSSRSLRAKI 120
           G  ESPA+GDEEN   L I  K   P+ K  SW  SK  SF FS  +SR   +R LR ++
Sbjct: 61  GEDESPARGDEENPLPLEIYGKPLDPKTKDLSWPMSKFHSFRFS--KSRRMDNRPLRVQL 120

Query: 121 HQAALKGD 123
           +QAA  GD
Sbjct: 121 YQAAQNGD 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137142.13.1e-1448.39ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
XP_022994352.11.5e-1148.44ankyrin repeat-containing protein ITN1-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LUR71.2e-2765.04ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G059... [more]
A0A6J1C7F71.5e-1448.39ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1JVK17.1e-1248.44ankyrin repeat-containing protein ITN1-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G004550.2ClCG03G004550.2mRNA