ClCG03G003870 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G003870
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	F-box/LRR-repeat protein At5g63520-like
Location	CG_Chr03: 4180473 .. 4181246 (-)
RNA-Seq Expression	ClCG03G003870
Synteny	ClCG03G003870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTCGCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTTCGCCTCGTTTCTCTTTTTCTTTATTTGGTCAATTAGCTGATCAGTAATAATATCGGCGTTTGATCGTCCAATAAATCGCCGTCGTGGTGTTTGGTTGCAGGTGGCAGTGAAGGAGGTTCTTCAAAAGGTTCTTTCGGAGCCGATTCGGCCGCATTTTGGAATTGCCTGTATCGGTTTGGAGTTAATTTGGAAGCGGTTCACCATCTCGTATTCTCCCCTTCCCAATTCGTTTTTAATAAAAATATAATTTTGTTGATAAATAACCCAAATTAAAATAATAATAATAATAATAATAATAATAATAATAATAAGGTTTTATTTTTTTTCCTTTCAATTTTTATTAGGTTTTGAGAACATTTTAAAAAAGTAGACTAGAATAAGCTTTTTCAAAAAAAAAAAAAAAAATGATTACATATAATAAAATTTGTTAGATTTAGGTTTAAATCTTGTTGTGAAAAGTATCTCATGTTATGATGCAGTACTCACAATACATTTATAACATGTAAAATGGTGATTCTTTCTTACAAGAATAGTGAATTCTTGAAAATGAACAACATTGAATGA

mRNA sequence

ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTCGCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTTCGCCTCGTGGCAGTGAAGGAGGTTCTTCAAAAGGTTCTTTCGGAGCCGATTCGGCCGCATTTTGGAATTGCCTGTATCGGTTTGGAGTTAATTTGGAAGCGGTTCACCATCTCTACTCACAATACATTTATAACATGTAAAATGGTGATTCTTTCTTACAAGAATAGTGAATTCTTGAAAATGAACAACATTGAATGA

Coding sequence (CDS)

ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTCGCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTTCGCCTCGTGGCAGTGAAGGAGGTTCTTCAAAAGGTTCTTTCGGAGCCGATTCGGCCGCATTTTGGAATTGCCTGTATCGGTTTGGAGTTAATTTGGAAGCGGTTCACCATCTCTACTCACAATACATTTATAACATGTAAAATGGTGATTCTTTCTTACAAGAATAGTGAATTCTTGAAAATGAACAACATTGAATGA

Protein sequence

MDTALGAGGVSDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLELIWKRFTISTHNTFITCKMVILSYKNSEFLKMNNIE

Homology

[Close]

BLAST of ClCG03G003870 vs. NCBI nr
Match: KAG6573137.1 (F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPK 60
           M+T +GAGGV     GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNRILCRPK
Sbjct: 1   METVIGAGGVDGGGGGGISPLNDDILRNILGRLPARSFASAGCVCKTWNSVCNRILCRPK 60

Query: 61  FSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           FSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG+E
Sbjct: 61  FSSAVSLNPSLH---VAVEEVLQKVLSEPIRPHFAIACIGVE 99

[Close]

BLAST of ClCG03G003870 vs. NCBI nr
Match: XP_022955211.1 (F-box/LRR-repeat protein At5g63520-like [Cucurbita moschata])

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPK 60
           M+T +GAGGV     GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNRILCRPK
Sbjct: 1   METVIGAGGVDGGGGGGISPLNDDILRNILGRLPARSFASAGCVCKTWNSVCNRILCRPK 60

Query: 61  FSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           FSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG+E
Sbjct: 61  FSSAVSLNPSLH---VAVEEVLQKVLSEPIRPHFAIACIGVE 99

[Close]

BLAST of ClCG03G003870 vs. NCBI nr
Match: XP_022994367.1 (F-box/LRR-repeat protein At5g63520-like [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-35
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MDTALGAGGV----SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRP 60
           M+T +GAGGV      GG  P+NDDIL NI GRLPA+SFA+AA VCKTWNSVCNRILCRP
Sbjct: 1   METVIGAGGVGGGGGGGGIPPLNDDILRNIIGRLPARSFASAACVCKTWNSVCNRILCRP 60

Query: 61  KFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           KFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG+E
Sbjct: 61  KFSSAVSLNPSLH---VAVEEVLQKVLSEPIRPHFAIACIGVE 100

[Close]

BLAST of ClCG03G003870 vs. NCBI nr
Match: XP_023542621.1 (F-box/LRR-repeat protein At5g63520-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-35
Identity = 80/107 (74.77%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MDTALGAGGV--------SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRI 60
           M+T +GAGGV          GG SP+NDDIL NI GRLPA+SFA+AA VCKTWNSVCNRI
Sbjct: 1   METVIGAGGVGGGGGGGGGGGGISPLNDDILRNILGRLPARSFASAACVCKTWNSVCNRI 60

Query: 61  LCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           LCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF I CIG+E
Sbjct: 61  LCRPKFSSAVSLNPSLH---VAVEEVLQKVLSEPIRPHFAIVCIGVE 104

[Close]

BLAST of ClCG03G003870 vs. NCBI nr
Match: KAG7012322.1 (F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.9 bits (398), Expect = 6.1e-35
Identity = 80/108 (74.07%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MDTALGAGGV---------SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNR 60
           M+T +GAGGV           GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNR
Sbjct: 1   METVIGAGGVDGGGGGGGGGGGGISPLNDDILRNILGRLPARSFASAGCVCKTWNSVCNR 60

Query: 61  ILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           ILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG+E
Sbjct: 61  ILCRPKFSSAVSLNPSLH---VAVEEVLQKVLSEPIRPHFAIACIGVE 105

[Close]

BLAST of ClCG03G003870 vs. ExPASy Swiss-Prot
Match: Q9FMV0 (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana OX=3702 GN=At5g63520 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 18  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKE 77
           MN+D+LHNI  RLPA+SFA A+ V + W+SVCNRIL RPK  SA S NP    +L A +E
Sbjct: 36  MNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPD---QLRAGEE 95

Query: 78  VLQKVLSEPIRPHFGIACI 97
           VL KVLSEPIRP F IA I
Sbjct: 96  VLDKVLSEPIRPQFVIANI 111

[Close]

BLAST of ClCG03G003870 vs. ExPASy TrEMBL
Match: A0A6J1GT60 (F-box/LRR-repeat protein At5g63520-like OS=Cucurbita moschata OX=3662 GN=LOC111457244 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.9e-36
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPK 60
           M+T +GAGGV     GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNRILCRPK
Sbjct: 1   METVIGAGGVDGGGGGGISPLNDDILRNILGRLPARSFASAGCVCKTWNSVCNRILCRPK 60

Query: 61  FSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           FSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG+E
Sbjct: 61  FSSAVSLNPSLH---VAVEEVLQKVLSEPIRPHFAIACIGVE 99

[Close]

BLAST of ClCG03G003870 vs. ExPASy TrEMBL
Match: A0A6J1JVL6 (F-box/LRR-repeat protein At5g63520-like OS=Cucurbita maxima OX=3661 GN=LOC111490107 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MDTALGAGGV----SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRP 60
           M+T +GAGGV      GG  P+NDDIL NI GRLPA+SFA+AA VCKTWNSVCNRILCRP
Sbjct: 1   METVIGAGGVGGGGGGGGIPPLNDDILRNIIGRLPARSFASAACVCKTWNSVCNRILCRP 60

Query: 61  KFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           KFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG+E
Sbjct: 61  KFSSAVSLNPSLH---VAVEEVLQKVLSEPIRPHFAIACIGVE 100

[Close]

BLAST of ClCG03G003870 vs. ExPASy TrEMBL
Match: A0A6J1C7B9 (F-box/LRR-repeat protein At5g63520 OS=Momordica charantia OX=3673 GN=LOC111008671 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1   MDTALGAGGVSDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSS 60
           M+ A+GA GV+ GG  P+N DILHNI GRLPA+ FA+AA VCKTWN +CNRIL RPKF+S
Sbjct: 1   MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFAS 60

Query: 61  AVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE 100
           AVSLNPS     VAVKEVL+KVLSEPIRPHF IACIG+E
Sbjct: 61  AVSLNPSFD---VAVKEVLRKVLSEPIRPHFAIACIGVE 96

[Close]

BLAST of ClCG03G003870 vs. ExPASy TrEMBL
Match: A0A6J1KFR0 (LOW QUALITY PROTEIN: F-box/LRR-repeat protein At5g63520-like OS=Cucurbita maxima OX=3661 GN=LOC111495385 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKE 77
           MNDDILHNIF RLPA+SFAAAA V KTWNS CNRIL RPKF+SAVSLNPSLH   VAV+E
Sbjct: 1   MNDDILHNIFRRLPARSFAAAACVSKTWNSTCNRILRRPKFASAVSLNPSLH---VAVEE 60

Query: 78  VLQKVLSEPIRPHFGIACIGLE 100
           V+ KVLSEPIRP F IACIG+E
Sbjct: 61  VVHKVLSEPIRPQFAIACIGVE 79

[Close]

BLAST of ClCG03G003870 vs. ExPASy TrEMBL
Match: A0A6J1EDN6 (F-box/LRR-repeat protein At5g63520-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431588 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 18  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKE 77
           MNDDILHNIF RLPA+SFAAAA V KTWNS CNRIL RPKF+SAVSLNPSLH   VAV+E
Sbjct: 1   MNDDILHNIFRRLPARSFAAAACVSKTWNSTCNRILRRPKFASAVSLNPSLH---VAVEE 60

Query: 78  VLQKVLSEPIRPHFGIACIGLE 100
           V+ KVLSEPIRP F IAC+G+E
Sbjct: 61  VVHKVLSEPIRPQFAIACVGVE 79

[Close]

BLAST of ClCG03G003870 vs. TAIR 10
Match: AT5G63520.1 (CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 8.5e-19
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 18  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKE 77
           MN+D+LHNI  RLPA+SFA A+ V + W+SVCNRIL RPK  SA S NP    +L A +E
Sbjct: 26  MNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPD---QLRAGEE 85

Query: 78  VLQKVLSEPIRPHFGIACI 97
           VL KVLSEPIRP F IA I
Sbjct: 86  VLDKVLSEPIRPQFVIANI 101

The following BLAST results are available for this feature:

BLAST of ClCG03G003870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573137.1	1.2e-35	78.43	F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022955211.1	1.2e-35	78.43	F-box/LRR-repeat protein At5g63520-like [Cucurbita moschata]	[more]
XP_022994367.1	2.1e-35	77.67	F-box/LRR-repeat protein At5g63520-like [Cucurbita maxima]	[more]
XP_023542621.1	4.7e-35	74.77	F-box/LRR-repeat protein At5g63520-like [Cucurbita pepo subsp. pepo]	[more]
KAG7012322.1	6.1e-35	74.07	F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of ClCG03G003870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV0	1.2e-17	63.29	F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana OX=3702 GN=At5g63520 ...	[more]

BLAST of ClCG03G003870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GT60	5.9e-36	78.43	F-box/LRR-repeat protein At5g63520-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JVL6	1.0e-35	77.67	F-box/LRR-repeat protein At5g63520-like OS=Cucurbita maxima OX=3661 GN=LOC111490...	[more]
A0A6J1C7B9	1.2e-31	72.73	F-box/LRR-repeat protein At5g63520 OS=Momordica charantia OX=3673 GN=LOC11100867...	[more]
A0A6J1KFR0	3.0e-27	80.49	LOW QUALITY PROTEIN: F-box/LRR-repeat protein At5g63520-like OS=Cucurbita maxima...	[more]
A0A6J1EDN6	3.9e-27	79.27	F-box/LRR-repeat protein At5g63520-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]

BLAST of ClCG03G003870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63520.1	8.5e-19	63.29	CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 18..58 e-value: 0.0012 score: 28.1
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 18..59 e-value: 7.9E-9 score: 35.2
None	No IPR available	GENE3D	1.20.1280.50		coord: 15..55 e-value: 1.1E-7 score: 33.6
None	No IPR available	PANTHER	PTHR14939:SF8	SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1	coord: 13..101
None	No IPR available	PANTHER	PTHR14939	F-BOX ONLY PROTEIN 22	coord: 13..101
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 16..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G003870.1	ClCG03G003870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding