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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGAATTGGAAACAACCCATTATTGCTAATTTGGTTGTTGTTATTATTACTTTTGATCTCCTCTTGCTTGCCTTCCGTTGATGCAAAGAGAATTGAGGCCATGGAAGCTCAGAAGAAGCAATTGAATGAAGATGGGAAGCCCTATGTTATTGGACATCGTTATCCAGAAGAAAGTGGTTCAAAGAACCATCACTTTATCCCAAGAGAAGCTTTCAACAACTATGGTGGGAGTGATAATGGTGGTGACTAA mRNA sequence ATGAGAATTGGAAACAACCCATTATTGCTAATTTGGTTGTTGTTATTATTACTTTTGATCTCCTCTTGCTTGCCTTCCGTTGATGCAAAGAGAATTGAGGCCATGGAAGCTCAGAAGAAGCAATTGAATGAAGATGGGAAGCCCTATGTTATTGGACATCGTTATCCAGAAGAAAGTGGTTCAAAGAACCATCACTTTATCCCAAGAGAAGCTTTCAACAACTATGGTGGGAGTGATAATGGTGGTGACTAA Coding sequence (CDS) ATGAGAATTGGAAACAACCCATTATTGCTAATTTGGTTGTTGTTATTATTACTTTTGATCTCCTCTTGCTTGCCTTCCGTTGATGCAAAGAGAATTGAGGCCATGGAAGCTCAGAAGAAGCAATTGAATGAAGATGGGAAGCCCTATGTTATTGGACATCGTTATCCAGAAGAAAGTGGTTCAAAGAACCATCACTTTATCCCAAGAGAAGCTTTCAACAACTATGGTGGGAGTGATAATGGTGGTGACTAA Protein sequence MRIGNNPLLLIWLLLLLLLISSCLPSVDAKRIEAMEAQKKQLNEDGKPYVIGHRYPEESGSKNHHFIPREAFNNYGGSDNGGD
Homology
BLAST of ClCG03G002890 vs. NCBI nr
Match: KAG6607149.1 (hypothetical protein SDJN03_00491, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 68.2 bits (165), Expect = 3.9e-08 Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 0
Query: 15 LLLLLISSCLPSVDAKRIEAMEAQKKQLNEDGKPYVIGHRYPEESGSKNHHFIPREAFNN 74
+LL+L SSCLP+ DAK++ K +LNEDGK +G RYP++SG KNHHFIPR+AFNN
Sbjct: 14 VLLVLSSSCLPAADAKQL------KWRLNEDGKAGHVG-RYPDQSGRKNHHFIPRDAFNN 73
Query: 75 YGGSDNG 82
Y G
Sbjct: 74 YAKRQAG 73
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6607149.1 | 3.9e-08 | 56.72 | hypothetical protein SDJN03_00491, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..65 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 48..83 |
| None | No IPR available | PROSITE | PS51257 | PROKAR_LIPOPROTEIN | coord: 1..23
score: 5.0 |
Relationships
The following mRNA feature(s) are a part of this gene:
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