ClCG03G002440 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G002440
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DNA-directed RNA polymerases I and III subunit RPAC2
Location	CG_Chr03: 2832210 .. 2835305 (+)
RNA-Seq Expression	ClCG03G002440
Synteny	ClCG03G002440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCCCAAATCTCTCTTCCTCCTTCACTTCCGGTGAAGGTGGCGGCAGCCTTTCCCCCTTTTGTCTTGCATTCCAGCCCAGCAGCAGCCTTTCCCCTATCTTCCTCCCTCTCTCCGGCGAGCTTCAACCCACGAACGGCGGCGACAACACCGTATCGCCCAAAAGCAGCGTCCGGCAACTCCTGCGCGCGACCTCAGTGGCGGACGACGACCAACACGTTTCTCCCTCCAGCGAACAGCGACCGTGACGCGCATCCTGTCCGTTGGTTTCGTTTAGCCGACAGCTTGGAGCAACTTTGGGTGACGCCACCACGGTCTTCTGGATTTTTCAGTAGCCTTTTCTCTAGTTCAAGGAGTTTCGGTACTTACCCATCCTGTTTCGGCATTAGTTTTGAGTTACCCACTTCTTTAACGGCTTCGAATATGTAGGATTGAGCCTAGTCGGACACCAACCAGCAAGGTTTCGAGTGGTTTGGGTACGTTTCAGCAGGTTCTTTAGATTTGTCTCTAACACTTGAAAGCCTTTAATTCTTCATTTAGCATATTTATGTTATTTTTTTGGCATTTTAGGCTTTTTAGTGGATTACATTTAGTTAGTATCTTTATGTTAACTTTATATATATAAAGAAAATATAGAAGAAATGATGTATCCTTGATATATCCATGTCTTAATTTTATAGAAATTGACATATCGTATCCTATTGTATCCGTATCCCATGTTTGTATCCGTGTTTGTGCTTCGTAAGATTAGAGGCTTGTTGGGTTAATTGAAGAATCATGAAAATAGTCTAGCTAATTTTATGTGCTTGCACTTGTGTCAACTTCCGAAGTGATATCTCAATTCTTAAGATTTGGTGGAAAAGAGATTAAACTTCTTGGATCCGTTTTGTAGAATTTTGGCTTTTTGCTAGTTTTGTAGACTTTTGGTTTATTTCTTTGATCTTCTCAATTTATTTGCCTTCATTTTTAATCAATATGCTGATTATGTTTGGTTTTCCTTTTTTTTTTTTATAGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGAGTAGGAGCTCTTATTCAGTTATTCTTGAGTGAATATTTTGAAATGTTAACAAGACATGCACTTACTAAAGAATTTGCAGTTCTTGGACCACTTATCCTTTCTAACCTTTCATCATTGAATTCTATTAATTCATGGCATAATAATTTAATAGATTCTTGGTTCTTTTGAACATATCATCAACAAGATCCTTGAAGAATTAATTAGGTTCTTGGATAACCCATGAGGCATAAATTGATAAATAATGTACATCCACTGCATGTGTTAATATGGGTTCCTTCATTGTCCATTCAGAAGAGTTATAAATATGTTGTCATCTTTTTTCACCTATCCAAGCAAGAGGAATTGATCGTTTGGTTGTGGTTCCTCCCCTAGAAAAGCTGGTTTAGATATTGTTGTCATTTTTTAGTGAATCATATCCGACATACTTTTAAATGACTTGTAACATCATCTTGCAGTCCAAGAGTGACATTTTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTCCAGACAACAGGTAATATTTTGAGGTAGTTTGATTCTCTAAAAGTGTAACTGATTGGTTCCCATTTTAGGACATTTTTTTCCTAATGATTGGATATGTTTTTTCCTGGTTTTTATTCTTTATACACATCCAATTTATGCATCCATGAGATATATAGCTTATGGATTTATGGGAAGTGTGATCCTTCAAATAAAAATCTTTCAATTAAATCGCCTTTCTGGAACACATGTTGGATTGTTGTAGCTTTGCTAGAATCCCGTTATTTTTGTTAGTGTATAAAATTATATATATTTTAGTATTTGAGCTAAGGGTCATGTTTATTTAGTTTCATAAGATTCAATTATCTGTTTAGATTTTGGATAGTTATTGTATGTAGTTCTTACCATCAACACTAGTAACTAACATTGATATGACACGTGTATTAGACAAACATTAGTTGATTGGATATAACGTGATAGGAAAATAGTAGGAAAATAGCGTAGCACGTGAAAGAGATTTAATACTTTGCTTTGAAAAGATAGTATGTTGCATATGCTGGTATATTATATTCCGTTATCCACATTTTTCTGCAATGCTATATGTGAACCAATCAATATTTGTTCTATAGGACATGTCACACTATTGTCTAATAAAAAATAACTATGACTACACATGATTAATTACATTTCAAAGTGTGAAGGTCATATTTAAAACTTAAACTACCTATTAGGCACAACCAAGTTACTTTAAACCTCAAGGACAGTTGTACAACTTATTAAATAGTTCCTATTCAAGTAGGGTCATAAATTTATAATTTAAACTTGAACATATGTGCATACCCTTTTGCAATTGTGAAGTAAAACCCGACTAACCAAGATGTTTGATGTTGAGGCCTATACAAATAGTGTCCCAAATGAATGGTCTTTCTTTACTCTTTCCTCATAGTTGGACTTGGGGAACCCAATGATCTGGAGTTGAAAGTAGGCAAAGCTATTATTGATTACTAGGGAAAAGCAAAGCACATGGAAATATGATAGAAAAGAAGGCTATTTGTTGAAGTGACTATGCATTAGCATTAGTAACATTAGCATTAGCATTAGAAATACTGATGAAAGGGGTTTGTGATTGAACATGAACATGGCAGGTGATCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAGCATGTAAGGAACACATTTGACAAGGCTGTGCTTGATATCAAACTCCCCAACCCTGTGACAGACATTAATATCAAATAGAATGGGATATTTCTTTTTCTTTGGCTTGTAATTTACCCTTTGTAGTATAAAGTCTATTATCTCAACTGATGGCTGATGCCCCCCTTCAGGGATTAGATATTGTTGATTTTATATCTTATTAGAAGAATGCAGATATTTTAAGATCCATGAGGAAAGTAGAGAAACATGTTTGATTAAATGTCTTTGTGTTAGATGTCAC

mRNA sequence

GTGGCCCAAATCTCTCTTCCTCCTTCACTTCCGGTGAAGGTGGCGGCAGCCTTTCCCCCTTTTGTCTTGCATTCCAGCCCAGCAGCAGCCTTTCCCCTATCTTCCTCCCTCTCTCCGGCGAGCTTCAACCCACGAACGGCGGCGACAACACCGTATCGCCCAAAAGCAGCGTCCGGCAACTCCTGCGCGCGACCTCAGTGGCGGACGACGACCAACACGTTTCTCCCTCCAGCGAACAGCGACCGTGACGCGCATCCTGTCCGTTGGTTTCGTTTAGCCGACAGCTTGGAGCAACTTTGGGTGACGCCACCACGGTCTTCTGGATTTTTCAGTAGCCTTTTCTCTAGTTCAAGGAGTTTCGGATTGAGCCTAGTCGGACACCAACCAGCAAGGTTTCGAGTGGTTTGGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTTTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTCCAGACAACAGGTGATCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAGCATGTAAGGAACACATTTGACAAGGCTGTGCTTGATATCAAACTCCCCAACCCTGTGACAGACATTAATATCAAATAGAATGGGATATTTCTTTTTCTTTGGCTTGTAATTTACCCTTTGTAGTATAAAGTCTATTATCTCAACTGATGGCTGATGCCCCCCTTCAGGGATTAGATATTGTTGATTTTATATCTTATTAGAAGAATGCAGATATTTTAAGATCCATGAGATGTCTTTGTGTTAGATGTCAC

Coding sequence (CDS)

ATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTTTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTCCAGACAACAGGTGATCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAGCATGTAAGGAACACATTTGACAAGGCTGTGCTTGATATCAAACTCCCCAACCCTGTGACAGACATTAATATCAAATAG

Protein sequence

MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK

Homology

[Close]

BLAST of ClCG03G002440 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL  PV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTKPVGDINIK 104

[Close]

BLAST of ClCG03G002440 vs. NCBI nr
Match: XP_004147276.2 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_011653666.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD+KL NPV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]

BLAST of ClCG03G002440 vs. NCBI nr
Match: KAE8652742.1 (hypothetical protein Csa_014245 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-50
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 97  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 156

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD+KL NPV DINIK
Sbjct: 157 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 200

[Close]

BLAST of ClCG03G002440 vs. NCBI nr
Match: XP_023522054.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo] >XP_023524948.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 3.7e-48
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KL  PV DINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of ClCG03G002440 vs. NCBI nr
Match: KAG7036964.1 (DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 54  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 113

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KL  PV DINIK
Sbjct: 114 DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 157

[Close]

BLAST of ClCG03G002440 vs. ExPASy Swiss-Prot
Match: Q5XK67 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-17
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E 
Sbjct: 20  EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDIK 94
            +     L+ VCQHV NTF+ ++ + K
Sbjct: 80  FRRGLNELVDVCQHVLNTFETSIKEYK 106

[Close]

BLAST of ClCG03G002440 vs. ExPASy Swiss-Prot
Match: P0DPB6 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 94
             PA E  +     LM VCQHV + F+ ++ D K
Sbjct: 89  TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122

[Close]

BLAST of ClCG03G002440 vs. ExPASy Swiss-Prot
Match: Q6DRI4 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-16
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E 
Sbjct: 19  DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDIK 94
           L++   NL  VC+HV  TF+  + + K
Sbjct: 79  LRNGLNNLTDVCKHVLQTFEARMKEFK 105

[Close]

BLAST of ClCG03G002440 vs. ExPASy Swiss-Prot
Match: P28000 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC19 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-16
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREV 67
           D T ++F + +EDHTL NALRY + ++P V FCGYSIPHPS+N +NIR+QT G+  A + 
Sbjct: 57  DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116

Query: 68  LKDACQNLMVVCQHVRNTFDKAV 90
           L+   ++LM +C  V + F + +
Sbjct: 117 LQKGLKDLMDLCDVVESKFTEKI 139

[Close]

BLAST of ClCG03G002440 vs. ExPASy Swiss-Prot
Match: Q1RMG8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-16
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 94
             PA E  +    +LM VCQHV + F+ ++ + K
Sbjct: 89  ALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122

[Close]

BLAST of ClCG03G002440 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.6e-51
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD+KL NPV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]

BLAST of ClCG03G002440 vs. ExPASy TrEMBL
Match: A0A6J1KDK3 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661 GN=LOC111493371 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.2e-48
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KL  PV DINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of ClCG03G002440 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.2e-48
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           D AREVLKD+CQNLMVVCQHVRNTFDK+VLD KL  PV DINIK
Sbjct: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104

[Close]

BLAST of ClCG03G002440 vs. ExPASy TrEMBL
Match: A0A6J1G901 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=3662 GN=LOC111452057 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.2e-48
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPNPVTDINIK 105
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KL  PV DINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of ClCG03G002440 vs. ExPASy TrEMBL
Match: A0A0A0LV21 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.4e-47
Identity = 98/108 (90.74%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL----PNPVTDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  L      PV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]

BLAST of ClCG03G002440 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-32
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 94
          DPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of ClCG03G002440 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-32
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 94
          DPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of ClCG03G002440 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-18
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 35  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 94
           PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

[Close]

BLAST of ClCG03G002440 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 53.9 bits (128), Expect = 8.9e-08
Identity = 27/90 (30.00%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 5   SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
           S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT 
Sbjct: 20  SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTS 79

Query: 65  DPA-REVLKDACQNLMVVCQHVRNTFDKAV 90
             +  +    A  +L     +++N F+  V
Sbjct: 80  QSSPMQAYNQAINDLDKELDYLKNQFEAEV 109

[Close]

BLAST of ClCG03G002440 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
          S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     
Sbjct: 20 SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR----- 79

Query: 65 DPAREVLKDACQNLMVV 78
          DP     KD  +NL VV
Sbjct: 80 DP-----KDWFRNLKVV 86

The following BLAST results are available for this feature:

BLAST of ClCG03G002440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893936.1	1.0e-50	97.12	DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]	[more]
XP_004147276.2	1.8e-50	95.19	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_01165...	[more]
KAE8652742.1	1.8e-50	95.19	hypothetical protein Csa_014245 [Cucumis sativus]	[more]
XP_023522054.1	3.7e-48	92.31	DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp....	[more]
KAG7036964.1	1.1e-47	91.35	DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyros...	[more]

BLAST of ClCG03G002440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XK67	3.5e-17	47.13	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G...	[more]
P0DPB6	1.7e-16	43.62	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=...	[more]
Q6DRI4	3.9e-16	47.13	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=p...	[more]
P28000	5.1e-16	46.99	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae...	[more]
Q1RMG8	6.6e-16	42.55	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=PO...	[more]

BLAST of ClCG03G002440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUT5	8.6e-51	95.19	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010...	[more]
A0A6J1KDK3	5.2e-48	91.35	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1D9Q8	5.2e-48	91.35	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3...	[more]
A0A6J1G901	5.2e-48	91.35	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=36...	[more]
A0A0A0LV21	3.4e-47	90.74	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910...	[more]

BLAST of ClCG03G002440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29540.1	4.0e-32	66.67	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	4.0e-32	66.67	RNApolymerase 14 kDa subunit	[more]
AT2G29540.3	4.2e-18	69.49	RNApolymerase 14 kDa subunit	[more]
AT3G52090.1	8.9e-08	30.00	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.1e-05	36.36	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 2..93 e-value: 1.6E-34 score: 120.0
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 8..90
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 12..83 e-value: 1.4E-29 score: 101.7
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..104
None	No IPR available	PANTHER	PTHR13946:SF37	SUBFAMILY NOT NAMED	coord: 1..104
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 16..47
IPR033898	DNA-directed RNA polymerases I and III subunit AC19	CDD	cd07029	RNAP_I_III_AC19	coord: 2..85 e-value: 1.41037E-43 score: 134.667

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G002440.1	ClCG03G002440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity