ClCG03G002310 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G002310
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	General transcription factor IIH subunit
Location	CG_Chr03: 2648970 .. 2650819 (+)
RNA-Seq Expression	ClCG03G002310
Synteny	ClCG03G002310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTCGACCAAGTCGAATGGCTGTTGTGCAAACTTGTATGTCAGGAACTTCTTTGATCAATATCCACTTAGTCAATTTGGTTGGTGACTATAAAAAATGGAGTGGCTCATTGCTTAACAGATCTTGGCGGAAGTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGGTATGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAGTCTTGTATCCTGCTCCTAATTCCTGTGATCTTGGGGACATCGTGGACTTTGCCACAATGAGAGAAATTAAAATGGCTATTTATTCTATTTTTTCAGTTGACCAGCTAATAGAACTGACCACAAAGGAAGCTTAACAGAGAATACAGTCATAAGACAGAAGTTCAAAGTAAAATTACCATAGCAAGATTCTATTTGACGTTTGTATATATGGAAGTTCTGTTTCCTAAATCTTTGTGAAATGCTTTCCTTTTGTGTACAGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCGATGCCCAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGCTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAAGTTTGTGAGCTGCTAACGAAGTATCAATCTGTGGATTCACACTTATCTCCTCACCCCATTTGGCTAGGTCGAATCATCATCTCTGTCCAATTATACTACTTGATGAAGTCTATGATAAAGTAGTTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAAATCTCTTTATGGTAATTATTGTCTTCTAATAGTATAATATGCACATCGAGTTAGACAGCATTTTGTGTCAGGGGATGTCTTAAAATCAGGTAAAGTGAAAATTAAGAAGATACTCATTTTTTCTTCCCTTCAAGGAGCTTTTTTAATGTTTGGTCATTCTTCAATACTAATTATGTGCTGCATTAGTACTGCAACATGATGACTTTGCAAACTGATTTTGCTCTTTCTGTGTTGAGTGACTTCTTTTTGTTACATTGTTCATATGTGATTATGTTTAAGATAATAGAAGCAACTTATATTTGTGGCATGCAAGTATGAACAAATGTGGATGAGATTTTGCCCCTTTGTAATTTGCTGAATTGAACTTTTGACCACCCTTCAATCATTGCATACTCATTCAAAAGTACTTTTCATTTTAGGCACAGGTAACAACCGAGGCATCTGTATTTCTTGCACAAAGGGCAAACAACACTTCCTATCTTGATTTTGATATTTAGATTCACAAGAGCTTGCACAATTGTCCTGGCTGCGAGAGTTTCAGGCGTCCCAAATTGGCGACTTCTGACAAATGATCGTCTACTTTTGGATGCAACTGCATGGCCTAACCAAATTCAAACTCAATATTCAATATGGCCATGAGGATACTTTGTACACGTGTTTACAAAGTTTCAAGCATGTTTTCCAATGATGTTGAATCTAAGGCTCACATTGTTACTACCAAAGTCGTCCGTCTTTCATGTTTTGGCCGCTTCTAAACTGATTCCATATAGAAGCAAAGCTGCTGGCGCTTCTACACTTGATGCCATTGTTGGAATTGGCAAGAGGATCCGTTGTGAGAACAAGATTTTTCAAGATGGAAGGCTGAAGCCCACTTTCCTTCTAGGCTGTACCCGAAGTTGA

mRNA sequence

ATGGATTTTCGACCAAGTCGAATGGCTGTTGTGCAAACTTTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCGATGCCCAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGCTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAAGTTTTCTATGATAAAGTAGTTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAAATCTCTTTATGGCTCACATTGTTACTACCAAAGTCGTCCGTCTTTCATGTTTTGGCCGCTTCTAAACTGATTCCATATAGAAGCAAAGCTGCTGGCGCTTCTACACTTGATGCCATTGTTGGAATTGGCAAGAGGATCCGTTGTGAGAACAAGATTTTTCAAGATGGAAGGCTGAAGCCCACTTTCCTTCTAGGCTGTACCCGAAGTTGA

Coding sequence (CDS)

ATGGATTTTCGACCAAGTCGAATGGCTGTTGTGCAAACTTTCCGGAGTCTTAAAGCTTTAGTGGGTAAACTGGAATACTTAGGTGAAGCATCCTTGCAGAATGTCTCGCTTCAAAGAGTTGCTATTGGAGCATGCCCCTCCACTCCAGCAATGGCAGAATCTGCGATGCCCAATTTAATCAAGGTGGGCCTTGAAGAAAGAGCGGCGGAGAGTTCTATTGCAATACGTTCATGCCACCAGGAAGCTAAAGCTGGAGGGGGATATACTTGCCCTCGATACAAAGCACAAGTTTTCTATGATAAAGTAGTTCATGATCCACATGATCCGCGACATCAACTACCAAAAGTTTGCTTTGGCTGCCAAGAAAGGCTCATGGACCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAAATCTCTTTATGGCTCACATTGTTACTACCAAAGTCGTCCGTCTTTCATGTTTTGGCCGCTTCTAAACTGATTCCATATAGAAGCAAAGCTGCTGGCGCTTCTACACTTGATGCCATTGTTGGAATTGGCAAGAGGATCCGTTGTGAGAACAAGATTTTTCAAGATGGAAGGCTGAAGCCCACTTTCCTTCTAGGCTGTACCCGAAGTTGA

Protein sequence

MDFRPSRMAVVQTFRSLKALVGKLEYLGEASLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTCPRYKAQVFYDKVVHDPHDPRHQLPKVCFGCQERLMDPGKNSNKHDIWKLSNEISLWLTLLLPKSSVFHVLAASKLIPYRSKAAGASTLDAIVGIGKRIRCENKIFQDGRLKPTFLLGCTRS

Homology

[Close]

BLAST of ClCG03G002310 vs. NCBI nr
Match: KAA0055121.1 (general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738.1 general transcription factor IIH subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 7.8e-21
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAK GGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]

BLAST of ClCG03G002310 vs. NCBI nr
Match: XP_008467294.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 7.8e-21
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAK GGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]

BLAST of ClCG03G002310 vs. NCBI nr
Match: XP_004143721.1 (general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 general transcription factor IIH subunit 2 [Cucumis sativus] >KGN50372.1 hypothetical protein Csa_000481 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-20
Identity = 61/134 (45.52%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAK GGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]

BLAST of ClCG03G002310 vs. NCBI nr
Match: XP_038874496.1 (general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-20
Identity = 62/137 (45.26%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAK GGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQV-----------------------------------FYDKVVHDPHDPRHQLPK 133
           PR KA+V                                     DKV+   HDPR+QLPK
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVL---HDPRNQLPK 365

[Close]

BLAST of ClCG03G002310 vs. NCBI nr
Match: KAG7036868.1 (General transcription factor IIH subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-19
Identity = 59/134 (44.03%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RA ESSIAI SCH+EAK GGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCF 365

[Close]

BLAST of ClCG03G002310 vs. ExPASy Swiss-Prot
Match: Q9ZVN9 (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-13
Identity = 48/135 (35.56%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 27  LGEASLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGG 86
           L   ++  V L+ + +   P  PA+AE A+ NLIK+G  +RAAE S+AI SCH+E K G 
Sbjct: 239 LYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGA 298

Query: 87  GYTCPRYKAQVF-------------------------------YDKV--VHDPHDPRHQL 129
           GY CPR KA+V                                +D+V  +   +D R +L
Sbjct: 299 GYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKL 358

[Close]

BLAST of ClCG03G002310 vs. ExPASy TrEMBL
Match: A0A5A7UNG8 (General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001400 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-21
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAK GGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]

BLAST of ClCG03G002310 vs. ExPASy TrEMBL
Match: A0A1S3CUH8 (General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-21
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAK GGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]

BLAST of ClCG03G002310 vs. ExPASy TrEMBL
Match: A0A0A0KPM4 (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 61/134 (45.52%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RAAESSIAI SCH+EAK GGGYTC
Sbjct: 245 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTC 304

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 305 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCF 364

[Close]

BLAST of ClCG03G002310 vs. ExPASy TrEMBL
Match: A0A6J1K980 (General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC111493405 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 59/134 (44.03%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RA ESSIAI SCH+EAK GGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCF 365

[Close]

BLAST of ClCG03G002310 vs. ExPASy TrEMBL
Match: A0A6J1GC53 (General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111452792 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 59/134 (44.03%), Postives = 74/134 (55.22%), Query Frame = 0


Query: 31  SLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGGGYTC 90
           +L     + + +   P  PA+A+SAMPNLIK+G  +RA ESSIAI SCH+EAK GGGYTC
Sbjct: 246 ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVGGGYTC 305

Query: 91  PRYKAQVF-------------------------------YDKVVHDP-HDPRHQLPKVCF 133
           PR KA+V                                +D+V     HDPRHQLPKVCF
Sbjct: 306 PRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQLPKVCF 365

[Close]

BLAST of ClCG03G002310 vs. TAIR 10
Match: AT1G05055.1 (general transcription factor II H2 )

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-14
Identity = 48/135 (35.56%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 27  LGEASLQNVSLQRVAIGACPSTPAMAESAMPNLIKVGLEERAAESSIAIRSCHQEAKAGG 86
           L   ++  V L+ + +   P  PA+AE A+ NLIK+G  +RAAE S+AI SCH+E K G 
Sbjct: 239 LYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGA 298

Query: 87  GYTCPRYKAQVF-------------------------------YDKV--VHDPHDPRHQL 129
           GY CPR KA+V                                +D+V  +   +D R +L
Sbjct: 299 GYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKL 358

The following BLAST results are available for this feature:

BLAST of ClCG03G002310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055121.1	7.8e-21	46.27	general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738....	[more]
XP_008467294.1	7.8e-21	46.27	PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo]	[more]
XP_004143721.1	3.9e-20	45.52	general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 gen...	[more]
XP_038874496.1	3.9e-20	45.26	general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida]	[more]
KAG7036868.1	3.3e-19	44.03	General transcription factor IIH subunit 2 [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of ClCG03G002310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVN9	4.8e-13	35.56	General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GT...	[more]

BLAST of ClCG03G002310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNG8	3.8e-21	46.27	General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CUH8	3.8e-21	46.27	General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674...	[more]
A0A0A0KPM4	1.9e-20	45.52	General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169...	[more]
A0A6J1K980	1.6e-19	44.03	General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1GC53	1.6e-19	44.03	General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of ClCG03G002310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05055.1	3.4e-14	35.56	general transcription factor II H2	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G002310.1	ClCG03G002310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0005634	nucleus