ClCG03G002020 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G002020
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 2196896 .. 2197096 (+)
RNA-Seq ExpressionClCG03G002020
SyntenyClCG03G002020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTGCCACTCCAAGTCGCCAAATTCCAAATAACCCACCAAGAAGGGGTCAGATCAAGGTTAAAATTGGTAAGGATTTTGCCACCTCAGCAGCCTCTGCAGCATCCTATATCGCCACCGCACTCGCCGGATTCATCCCAGATCCTACACCGCCGGAGAATGCTCCGCCACCCCCTCCGCCCCCTGCCGGTACTTAG

mRNA sequence

ATGGGTTCTGCCACTCCAAGTCGCCAAATTCCAAATAACCCACCAAGAAGGGGTCAGATCAAGGTTAAAATTGGTAAGGATTTTGCCACCTCAGCAGCCTCTGCAGCATCCTATATCGCCACCGCACTCGCCGGATTCATCCCAGATCCTACACCGCCGGAGAATGCTCCGCCACCCCCTCCGCCCCCTGCCGGTACTTAG

Coding sequence (CDS)

ATGGGTTCTGCCACTCCAAGTCGCCAAATTCCAAATAACCCACCAAGAAGGGGTCAGATCAAGGTTAAAATTGGTAAGGATTTTGCCACCTCAGCAGCCTCTGCAGCATCCTATATCGCCACCGCACTCGCCGGATTCATCCCAGATCCTACACCGCCGGAGAATGCTCCGCCACCCCCTCCGCCCCCTGCCGGTACTTAG

Protein sequence

MGSATPSRQIPNNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPPPPPPPAGT
Homology
[Close]
BLAST of ClCG03G002020 vs. NCBI nr
Match: KGN65654.1 (hypothetical protein Csa_019816 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-12
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPPPPPPPAG 66
          NNPPRRG+I  KIG+D ATSAA+AASY+  ALAG IPDP PP +APPPPPPPAG
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPAG 60

[Close]
BLAST of ClCG03G002020 vs. NCBI nr
Match: TYK02876.1 (hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPP 59
          NNPP+RG+IK KIG+D ATSAA+AASY+  ALAG IPD  PP + PP
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

[Close]
BLAST of ClCG03G002020 vs. ExPASy TrEMBL
Match: A0A0A0LX95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPPPPPPPAG 66
          NNPPRRG+I  KIG+D ATSAA+AASY+  ALAG IPDP PP +APPPPPPPAG
Sbjct: 7  NNPPRRGRIMAKIGEDLATSAATAASYVVAALAGLIPDPPPPVHAPPPPPPPAG 60

[Close]
BLAST of ClCG03G002020 vs. ExPASy TrEMBL
Match: A0A5D3BXB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00050 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-08
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 12 NNPPRRGQIKVKIGKDFATSAASAASYIATALAGFIPDPTPPENAPP 59
          NNPP+RG+IK KIG+D ATSAA+AASY+  ALAG IPD  PP + PP
Sbjct: 7  NNPPKRGKIKAKIGEDLATSAATAASYVVAALAGLIPDRPPPNHGPP 53

The following BLAST results are available for this feature:
BLAST of ClCG03G002020 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65654.17.9e-1275.93hypothetical protein Csa_019816 [Cucumis sativus][more]
TYK02876.11.5e-0768.09hypothetical protein E5676_scaffold968G00050 [Cucumis melo var. makuwa][more]
BLAST of ClCG03G002020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G002020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX953.8e-1275.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479110 PE=4 SV=1[more]
A0A5D3BXB97.4e-0868.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of ClCG03G002020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G002020.1ClCG03G002020.1mRNA