ClCG03G002000 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G002000
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 2157631 .. 2158029 (+)
RNA-Seq ExpressionClCG03G002000
SyntenyClCG03G002000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTCCTCACCATAATAGTAACAACCATCATCACTCCCCACGGTCGACCGTGCTCGGGCCAGCCTTTTCCGAGCAGCAGCAACAAGAACTCGAGCGAGTGCTGTGAAGGGGCTTCCTCTCGGCTTATCGAGGCGATAGAATCGATTTCCGAGCAAGAAAATAGCAAGGGATACGACATTGGCTGCAAGGCCGATGCCAAAGCCCCAACCCCAGCTGACATTATCTTGAATGTAGACGATGGCTGTGGAGCTTGCTACAAATCCAGCATAGAGAGTGACAAAAAACCAATTGAAGAAAATGTTTTGGTCTTTAATTGCATCATATTGGTTTGCTCCAAGAGTTGCTGTAGTGAAACGAGAGCCTCCAGATCCAAGAGATGCAAGGATAATGCTTGA

mRNA sequence

ATGATGGTCCTCACCATAATAGTAACAACCATCATCACTCCCCACGGTCGACCGTGCTCGGGCCAGCCTTTTCCGAGCAGCAGCAACAAGAACTCGAGCGAGTGCTGTGAAGGGGCTTCCTCTCGGCTTATCGAGGCGATAGAATCGATTTCCGAGCAAGAAAATAGCAAGGGATACGACATTGGCTGCAAGGCCGATGCCAAAGCCCCAACCCCAGCTGACATTATCTTGAATGTAGACGATGGCTGTGGAGCTTGCTACAAATCCAGCATAGAGAGTGACAAAAAACCAATTGAAGAAAATGTTTTGGTCTTTAATTGCATCATATTGGTTTGCTCCAAGAGTTGCTGTAGTGAAACGAGAGCCTCCAGATCCAAGAGATGCAAGGATAATGCTTGA

Coding sequence (CDS)

ATGATGGTCCTCACCATAATAGTAACAACCATCATCACTCCCCACGGTCGACCGTGCTCGGGCCAGCCTTTTCCGAGCAGCAGCAACAAGAACTCGAGCGAGTGCTGTGAAGGGGCTTCCTCTCGGCTTATCGAGGCGATAGAATCGATTTCCGAGCAAGAAAATAGCAAGGGATACGACATTGGCTGCAAGGCCGATGCCAAAGCCCCAACCCCAGCTGACATTATCTTGAATGTAGACGATGGCTGTGGAGCTTGCTACAAATCCAGCATAGAGAGTGACAAAAAACCAATTGAAGAAAATGTTTTGGTCTTTAATTGCATCATATTGGTTTGCTCCAAGAGTTGCTGTAGTGAAACGAGAGCCTCCAGATCCAAGAGATGCAAGGATAATGCTTGA

Protein sequence

MMVLTIIVTTIITPHGRPCSGQPFPSSSNKNSSECCEGASSRLIEAIESISEQENSKGYDIGCKADAKAPTPADIILNVDDGCGACYKSSIESDKKPIEENVLVFNCIILVCSKSCCSETRASRSKRCKDNA
Homology
[Close]
BLAST of ClCG03G002000 vs. NCBI nr
Match: KAE8653226.1 (hypothetical protein Csa_019540 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 0 

Query: 1   MMVLTIIVTTIITPHGRPCSGQPFPSSSNKNSSECCEGASSRLIEAIESISEQENSKGYD 60
           MMVLT+I  TII   GR CS +PF S  + NSSE  E A S LIEAI+S  +QENSK   
Sbjct: 28  MMVLTLIGATIIPFRGRWCSVKPFQSIDDNNSSESGEKAPSWLIEAIKSFFDQENSKKKG 87

Query: 61  IGCKADAKAPTPADIILNVDDGCGACYKSSIESDKK 97
           +G +ADAKA T AD +LN+D+GC A  KS IESDKK
Sbjct: 88  VGSEADAKALTLADTVLNIDNGCRASSKSRIESDKK 123

[Close]
BLAST of ClCG03G002000 vs. ExPASy TrEMBL
Match: A0A0A0LXV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G480170 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 0 

Query: 1  MMVLTIIVTTIITPHGRPCSGQPFPSSSNKNSSECCEGASSRLIEAIESISEQENSKGYD 60
          MMVLT+I  TII   GR CS +PF S  + NSSE  E A S LIEAI+S  +QENSK   
Sbjct: 1  MMVLTLIGATIIPFRGRWCSVKPFQSIDDNNSSESGEKAPSWLIEAIKSFFDQENSKKKG 60

Query: 61 IGCKADAKAPTPADIILNVDDGCGACYKSSIESDKK 97
          +G +ADAKA T AD +LN+D+GC A  KS IESDKK
Sbjct: 61 VGSEADAKALTLADTVLNIDNGCRASSKSRIESDKK 96

The following BLAST results are available for this feature:
BLAST of ClCG03G002000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653226.12.1e-1659.38hypothetical protein Csa_019540 [Cucumis sativus][more]
BLAST of ClCG03G002000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG03G002000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXV81.0e-1659.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G480170 PE=4 SV=1[more]
BLAST of ClCG03G002000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G002000.1ClCG03G002000.1mRNA