ClCG03G000660 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G000660
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	extensin-like isoform X2
Location	CG_Chr03: 655819 .. 656311 (+)
RNA-Seq Expression	ClCG03G000660
Synteny	ClCG03G000660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTTTCAATCCTTGCCTTACTCTCTTCCTCTTGCTCTCCTTTGTCCTCGTTACTTTAGCTCGGCTCCATTCAGGTACGCAAATCCCTACTGGTTGTCAAAAAGTCTAGACTTGTGTAGTTCGTATCTTGAATAGTGTATAAAAAACTAAAATCTAATATCATGTCAGAAAAACAAAACACACCGATTGTGTTAAATGACTATGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAGCCACCAATGATGATAAATGATTATGCTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAACCTCCAATGATGATAAATGACTATGCTAACCCAAGACATGATCCAAACCAACCACCAATGATGATAAATGACTATGGTGATTCAGGAGCTAATCCAAGACATAATCCAAATCAGCCGCCCCCACCTCTGCCACGACGGTTTGAGGTTAGAGTTGCCAACGGAGACGTTAGCACAAATCCCTAA

mRNA sequence

ATGGATTGTTTCAATCCTTGCCTTACTCTCTTCCTCTTGCTCTCCTTTGTCCTCGTTACTTTAGCTCGGCTCCATTCAGAAAAACAAAACACACCGATTGTGTTAAATGACTATGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAGCCACCAATGATGATAAATGATTATGCTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAACCTCCAATGATGATAAATGACTATGCTAACCCAAGACATGATCCAAACCAACCACCAATGATGATAAATGACTATGGTGATTCAGGAGCTAATCCAAGACATAATCCAAATCAGCCGCCCCCACCTCTGCCACGACGGTTTGAGGTTAGAGTTGCCAACGGAGACGTTAGCACAAATCCCTAA

Coding sequence (CDS)

ATGGATTGTTTCAATCCTTGCCTTACTCTCTTCCTCTTGCTCTCCTTTGTCCTCGTTACTTTAGCTCGGCTCCATTCAGAAAAACAAAACACACCGATTGTGTTAAATGACTATGCTGATCCAGGAGCTAATCCAAGACATGATCCAAACCAGCCACCAATGATGATAAATGATTATGCTGATCCGGGAGCTAATCCAAGACATGATCCAAACCAACCTCCAATGATGATAAATGACTATGCTAACCCAAGACATGATCCAAACCAACCACCAATGATGATAAATGACTATGGTGATTCAGGAGCTAATCCAAGACATAATCCAAATCAGCCGCCCCCACCTCTGCCACGACGGTTTGAGGTTAGAGTTGCCAACGGAGACGTTAGCACAAATCCCTAA

Protein sequence

MDCFNPCLTLFLLLSFVLVTLARLHSEKQNTPIVLNDYADPGANPRHDPNQPPMMINDYADPGANPRHDPNQPPMMINDYANPRHDPNQPPMMINDYGDSGANPRHNPNQPPPPLPRRFEVRVANGDVSTNP

Homology

[Close]

BLAST of ClCG03G000660 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-44
Identity = 104/172 (60.47%), Postives = 110/172 (63.95%), Query Frame = 0


Query: 1   MDCFNPCLTLFLLLSFVLVTLARL--HSEKQNTPIVLNDYADPGANPRHDPNQPPMMIND 60
           M+ F   LT FLLLSF L+TLAR+  HSE QN  I +NDYADPGANPRHDPNQPPMMIND
Sbjct: 1   MNYFKARLTFFLLLSFALITLARITPHSESQNNTITINDYADPGANPRHDPNQPPMMIND 60

Query: 61  YADPGANPRHDPNQPPMMINDY--------------------ANPRHDPNQPPMMINDYG 120
           YADPGANPRHDPNQ PMMINDY                    ANPRHDPNQPPMMINDY 
Sbjct: 61  YADPGANPRHDPNQTPMMINDYTDPGANPRHDPNQPPMMINRANPRHDPNQPPMMINDYT 120

Query: 121 DSGANPRHNPNQPP-------------------PPLPRRFEVRVANGDVSTN 132
           D  ANPRH+PNQPP                    P PRRF+V  A G VS N
Sbjct: 121 DPRANPRHDPNQPPMMINDYADAGANPRHDSNQSPPPRRFKVSAAGGHVSKN 172

[Close]

BLAST of ClCG03G000660 vs. NCBI nr
Match: KAB8099948.1 (hypothetical protein EE612_030285, partial [Oryza sativa])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 31  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP 90
           T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP
Sbjct: 4   TDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSPP 63

Query: 91  ---------------MMINDY----ANPRHDPNQPP---------------MMINDYGDS 113
                          + +NDY    ANPRH+P +PP               + +NDY   
Sbjct: 64  GREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLAP 123

[Close]

BLAST of ClCG03G000660 vs. NCBI nr
Match: EEE64166.1 (hypothetical protein OsJ_18998 [Oryza sativa Japonica Group] >BAS94625.1 Os05g0487100 [Oryza sativa Japonica Group])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 31  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP 90
           T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP
Sbjct: 58  TDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSPP 117

Query: 91  ---------------MMINDY----ANPRHDPNQPP---------------MMINDYGDS 113
                          + +NDY    ANPRH+P +PP               + +NDY   
Sbjct: 118 GREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLAP 177

[Close]

BLAST of ClCG03G000660 vs. NCBI nr
Match: AAT01334.1 (hypothetical protein [Oryza sativa Japonica Group] >AAT77275.1 hypothetical protein [Oryza sativa Japonica Group])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 31  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP 90
           T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP
Sbjct: 56  TDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSPP 115

Query: 91  ---------------MMINDY----ANPRHDPNQPP---------------MMINDYGDS 113
                          + +NDY    ANPRH+P +PP               + +NDY   
Sbjct: 116 GREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLAP 175

[Close]

BLAST of ClCG03G000660 vs. NCBI nr
Match: XP_022948581.1 (extensin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 67/172 (38.95%), Postives = 82/172 (47.67%), Query Frame = 0


Query: 4   FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGANPRHDPNQP--------- 63
           F  CL L  LLSF LV+ AR+ S+  KQ T IV+NDY+DPG NP   P  P         
Sbjct: 3   FKGCLCLVFLLSFALVSSARIMSDSGKQATKIVINDYSDPGKNPTLSPVVPKQFPPPPPD 62

Query: 64  --PMMINDYADPGAN-------PRHDPNQPP----MMINDYANPRHDPNQPPM------- 123
             P  INDY+DPG N       P+  P  PP     +INDY++P  +P   P+       
Sbjct: 63  FEPFAINDYSDPGKNPTLSPVVPKQFPPPPPDFEAFVINDYSDPGKNPTLSPVVPKQFPP 122

Query: 124 --------MINDYGDSGANPRHNPNQPP--PPLPRRFEVRVAN--GDVSTNP 133
                   +INDY D G NP  +P  P   PP P  F+  V N   D   NP
Sbjct: 123 PPPDFKAFVINDYSDPGKNPTLSPVVPKQFPPPPPDFKAFVINDYSDPGKNP 174

[Close]

BLAST of ClCG03G000660 vs. ExPASy Swiss-Prot
Match: P26694 (Circumsporozoite protein OS=Plasmodium reichenowi OX=5854 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.2e-07
Identity = 40/100 (40.00%), Postives = 46/100 (46.00%), Query Frame = 0


Query: 36  NDYADPGANPRHDPNQPPMM---INDYADPGANPRHDPNQPPMMINDYANPRHDPNQPPM 95
           ND  DP ANP  DPN  P +    N   DP ANP  DPN  P  +N  ANP  DPN  P 
Sbjct: 118 NDNVDPNANPNVDPNANPNVDPNANPNVDPNANPNVDPNANP-NVNPNANPNVDPNANP- 177

Query: 96  MINDYGDSGANPRHNPNQPPPPLPRRFEVRVANGDVSTNP 133
            +N   +   NP  NPN  P   P        N + + NP
Sbjct: 178 NVNPNANPNVNPNANPNVNPNANPNANPNANPNANPNANP 215

[Close]

BLAST of ClCG03G000660 vs. ExPASy TrEMBL
Match: A0A0E0DTA0 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 51/131 (38.93%), Postives = 66/131 (50.38%), Query Frame = 0


Query: 31  TPIVLNDYADPGANPRHDPNQPP---------------MMINDYADPGANPRHDPNQPP- 90
           T + +NDY  PGANPRH+P +PP               + +NDY  PGANPRH+P +PP 
Sbjct: 55  TEVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAMATDVEVNDYPAPGANPRHNPKRPPG 114

Query: 91  --------------MMINDY----ANPRHDPNQPP---------------MMINDYGDSG 113
                         + +NDY    ANPRH+P +PP               + +NDY   G
Sbjct: 115 REMSVLGTVAATTNVEVNDYPAPGANPRHNPKRPPGREMFAQGMAAATTNVEVNDYPGPG 174

[Close]

BLAST of ClCG03G000660 vs. ExPASy TrEMBL
Match: Q75KZ2 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.10 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 31  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP 90
           T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP
Sbjct: 56  TDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSPP 115

Query: 91  ---------------MMINDY----ANPRHDPNQPP---------------MMINDYGDS 113
                          + +NDY    ANPRH+P +PP               + +NDY   
Sbjct: 116 GREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLAP 175

[Close]

BLAST of ClCG03G000660 vs. ExPASy TrEMBL
Match: A0A0N7KKZ9 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18998 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 31  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP 90
           T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP
Sbjct: 58  TDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSPP 117

Query: 91  ---------------MMINDY----ANPRHDPNQPP---------------MMINDYGDS 113
                          + +NDY    ANPRH+P +PP               + +NDY   
Sbjct: 118 GREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLAP 177

[Close]

BLAST of ClCG03G000660 vs. ExPASy TrEMBL
Match: B9FKV0 (Os05g0487100 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0487100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 31  TPIVLNDYADPGANPRHDPNQPP----------------MMINDYADPGANPRHDPNQPP 90
           T + +NDY  PGANPRH+P +PP                + +NDY  PGANPRH+P  PP
Sbjct: 58  TDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSPP 117

Query: 91  ---------------MMINDY----ANPRHDPNQPP---------------MMINDYGDS 113
                          + +NDY    ANPRH+P +PP               + +NDY   
Sbjct: 118 GREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLAP 177

[Close]

BLAST of ClCG03G000660 vs. ExPASy TrEMBL
Match: A0A6J1G9M0 (extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452213 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 67/172 (38.95%), Postives = 82/172 (47.67%), Query Frame = 0


Query: 4   FNPCLTLFLLLSFVLVTLARLHSE--KQNTPIVLNDYADPGANPRHDPNQP--------- 63
           F  CL L  LLSF LV+ AR+ S+  KQ T IV+NDY+DPG NP   P  P         
Sbjct: 3   FKGCLCLVFLLSFALVSSARIMSDSGKQATKIVINDYSDPGKNPTLSPVVPKQFPPPPPD 62

Query: 64  --PMMINDYADPGAN-------PRHDPNQPP----MMINDYANPRHDPNQPPM------- 123
             P  INDY+DPG N       P+  P  PP     +INDY++P  +P   P+       
Sbjct: 63  FEPFAINDYSDPGKNPTLSPVVPKQFPPPPPDFEAFVINDYSDPGKNPTLSPVVPKQFPP 122

Query: 124 --------MINDYGDSGANPRHNPNQPP--PPLPRRFEVRVAN--GDVSTNP 133
                   +INDY D G NP  +P  P   PP P  F+  V N   D   NP
Sbjct: 123 PPPDFKAFVINDYSDPGKNPTLSPVVPKQFPPPPPDFKAFVINDYSDPGKNP 174

The following BLAST results are available for this feature:

BLAST of ClCG03G000660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895781.1	2.4e-44	60.47	circumsporozoite protein-like [Benincasa hispida]	[more]
KAB8099948.1	1.1e-12	38.64	hypothetical protein EE612_030285, partial [Oryza sativa]	[more]
EEE64166.1	1.1e-12	38.64	hypothetical protein OsJ_18998 [Oryza sativa Japonica Group] >BAS94625.1 Os05g04...	[more]
AAT01334.1	1.1e-12	38.64	hypothetical protein [Oryza sativa Japonica Group] >AAT77275.1 hypothetical prot...	[more]
XP_022948581.1	1.1e-12	38.95	extensin-like isoform X2 [Cucurbita moschata]	[more]

BLAST of ClCG03G000660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26694	3.2e-07	40.00	Circumsporozoite protein OS=Plasmodium reichenowi OX=5854 PE=3 SV=1	[more]

BLAST of ClCG03G000660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0E0DTA0	1.4e-13	38.93	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
Q75KZ2	5.3e-13	38.64	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.1...	[more]
A0A0N7KKZ9	5.3e-13	38.64	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18998 PE...	[more]
B9FKV0	5.3e-13	38.64	Os05g0487100 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0487100 PE...	[more]
A0A6J1G9M0	5.3e-13	38.95	extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452213 PE=4 SV=1	[more]

BLAST of ClCG03G000660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G000660.1	ClCG03G000660.1	mRNA