ClCG02G023210 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G023210
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	heterogeneous nuclear ribonucleoprotein F
Location	CG_Chr02: 37586237 .. 37591163 (-)
RNA-Seq Expression	ClCG02G023210
Synteny	ClCG02G023210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTAGAAAATAGGGAATCCAGAACATTCGGGGTGGGCGGTTAACGTGGAATCTGGCGGATTCCAAGCCACGTTTTAGTGGGATGTCTTTGGACAATTTTGAATTTCTGTTTTTAAGTTTTAACTTCTATCACGCTTCTTCCACCTCACCTCCCTCCTCCACTCGCATCTTTGAGCGTGATACACAGTTTTTTTTTTCTTTTTCTGATTTAGATTTTTTTTTTATGTGTAGTTTTTCTTTTTCTTTTGCTAATTTAACAAGATTAGAGGTGGAAATTCGAGAGAGAGCTAATTCTTACTTTATATATATAGTATGGTACTAGTGAGTTGGTAGAAATTTATAAAATAATTAAATAAACAAGTCATCAAATATTAAAAAAATTTATTTCCATGTAATGGACTATGGACTTGGAGATTGGAGAGTGGAGAGTGGTGTTCACGCGGTTGTAAAATGCGTGAGAATAGTTAACAAATGAATATTCTCCGAGCAAAAGTCGTAGTCAACAATCTCAACGTGGAAATGGAAAGTCACGTGAACAAAATTTGTGTCGCACGTGGCAGATTGAACTCGGTATATAAGGCCTTTGGGCCAAGTAGCATCCCATACCACACTGAGCCTACTATCTTACATTATTGGGCCCAATTATGTGTGGGCTCTGGCCCATTTTCCTGCTTTATTCTATCCTATTTATATTTATTATTATATATATTAATTATAAAACAAAAAAGAGAGGGGGATGTATCATTAAATAATCTAATCTCATAGACTTCTCATTATCATTAACTAATAAATCTCATTGCTGCATGGAATTTTGTTTGTGGTTGGTTTGGATGCTACTTAGACCATCTTGGACAAATTTGACCGGCATAATGAAGATTTGTCTATATTTGTTTGTTATTAAATCATCTTGTTATTTTGGAATTCAATTGTTCGGAAAATGTAGACTATGTTGAACTACAAGACAATTTACCGTTTCTAGGTCGCATTTCTTGTTAATATGATGTTGAGTCTCTTAGGAGTGCGAACAAAATCCCACATTGGTGAGGAAAGAGAATGATCATAAGTATATAAATAAGGACAATTATCTCTATTGGTATGAGATATTTTAGGTGGTACCAAAAGCAAAATTATGAGGATTTATGTTAAAGTGGATAATATTATGAAAATTTTTATTATTTAATGATTTAGAGATAGTAGCTTAAACATATTGGAATAAAAGAATCTTAAATCTCTACACTAATTGCGTTGAGTCTCTACACTAAGTAAAGAAGTTTTTATAAAAAAATATGTTAAAATTGAAGGACTAGATTGATGCAAAATTGGAAGTATATTGTTAATTAGAGGGCGTGATTAATGTAACCCTAAATTGTTGAAAGTGGATTTTCCTCGTTCGAGCACTTGTCGAGCTTCGTCCTCAAATTCATGGGCCAGCCCGGAATGAAATCAGAAGGGTAGGGATCCATTGAGGCTTAATCGGAGGTCTCAGTTCCTTCCGCGTATTTCCCTTTGTGAATTTCGATTCAGATTTCACAATCCAACTGAAGCTGCGAGGCCATTCAACAACAACTGGGTATCCCCTATCAGCATGAACATGTTCTACCGAGGGTAAACTTCCCCGATCTCTATGCTCAAGTTTTTTTCTTTCTCTGTTTCTTTTTCCTGTTAATTCTCACAATTTGACGTCGATTTTCGGTTCTGGTCATCTTTTTTTCTCCCTATATCCTGTAATATCTTAACTGATTGGGATTCTAAGCTGCTAGTTACTAATTATTCTTACGAACCATTATCGTTTTCTTCATAATTCACTCTCGAGAGTTTCGTTCTTTCTTTTATTGGATTAGGATTTTTTAGACCGATTATGGGTATGACCGTATATGCGTGAATGTTGTTATTGTGGTGTAGTTTGTTTTGTTTTGGGTTTTTATACCCTTCTGCAGGCTTTGCACGATAGGATGGGGAGAGACAATTTGGTTAAACAAGAAAAGCAGAATAAAACCGAAGTTTTAACTTGAAAATTTGGAGCTTGGAGTTTATTGTTTTTGTGAGTCTGGGTAGGATGATTAGTTGGCATGTTTATATGATTTAGAAGACTGAGTTGTTGAATTGTCATCGATTAACTGTGGGTGTTGGTGACTCTTGAGCTTTAATGTTTATTGTCTTAATAATACATGAGAATGTTTTAGAATGGGAAGAATACGCTTCATTCTTTTACCTTCTTTGCTCAAGATGAACCCATTCACCAGTGCGTGAGAGGCTGGAAAATGAGGAAAGGACAAGAGGGCCAAATTAGTTCAACCACCAAAGAAGGCTAAAATCAAAACTATCGGCTAGAAACGCAAGAACTACAATTTTTACTTTATTCTAGAATTTTTGACCCATGGCTAGTTTAAATGTAATGTCAATATTATTAGGAGGAAGAGAGTCACCAATATACGAAAGTATTAGGAACATTCTCTCAATTGTTTACCAAGAATGAACCACCTCAATTGGCTTTTTACAATTGAATTGGAGGAGGCCTTTGGGATGGTTGATTGAAATTTATTGAATATATCGTATTGGAGAAAAGGGGCTTTGGCCTGAAAGGAAGCAAGCGAATATTCAATTGTTTCGAGAGTTGGTGGACAACAGCAAGAGGAATAGCAAATTCTATTAGGACCCAAACTAACTCTTATTCAATATTTGATCTAGAATTTCAATAAATTTCTATGTAAACCTCTCTTCGAAATTCCTATTTCTATGGCCAGGGTTCTGAAGAAACACCTGAGTGATTTCTCCTGGCACGATGATTCCATGTGACATGTCAACAGGCTGCCACCTTGTGTCAATCAATTTGTAACAACCCTGAGCTTCCTGTTGGGGCATTAGTATTGGCAGTGTAATCATCATCAACTGGGCCTCATTTTTAAATGGTCACAGAGGTTCTTAAATGAACAAATTCTCTCTATCACTAGTCATGTCTAGTAAATATGATGTTCAAATGAATGGATGATCTCCCCTTGATAAATTTCCGGCACATGATGCTCAATCCTCTGGTGGGTTTCAAAGCTGAAAATGGAGAGAGAATTTGATTTTAGGAGAATTGCTCATCACAAACCCGCACACTGAGACCTTTATCACAGATTACTTCCACACAGCCATACCTCTATACTACTATGAAAAACAAATGTTAGTGAGCTGACTGTCAGGATTGAAGACACAATGGCCTGGAGCCTTGTCTATTGAAGAGATCTTAGGGATGAGGAACTCCAACCTGCAAGGAAAAAGAAATTTGAAGTCTGGACATATGTGGAAATATCTCCATTCTCCAGCAAGTCTCTTTTCATCACCTTGTTTTCCCATATCCAACCATTTAAAAATCTATGGCAAATTTTGTTTGGAGCAGAAAGATTACCAAAAAGTTTAAGGGTTCTTATTTTTAGGAGAGTGGTACTAAACACCTTTTAAAAGTTGCTCGCAAGATTGCATCCCCCTTCTTTTCAATCTCCAAACTGGTCCATGATATGCAAAGCCATCTCTTCCTATGCTTCAATTTTGTCTATGGTTAAGTTTAATGTAGTCCTTCACTGCAGGTTGGTGGTCGTGGAATTTCCTGTGGGTATTGGTATTTGGCAATGCATCTCTGCATTTGAGTTAGAAGCGTCTGACTATTTTTTTCCCCCTATATATCTTCTGTGTTGAGGAAATAGTGAAGTTTCCCCAAGTTTGTTTGTATGGGAAACCTGAAATTGCAGATCAATACTTTTATAGCTAAGAAAACATTAGATGTGCATAGGAGCCATCTCTTCGTTGGTAGCATAGCAATGAATGGAAGAAATGAGAATGCTTTTCTTTTATTTGAATTTCAAAACTTCTTTTCTTCCTCTTTTTTATCTCCCAGGATGGGGTATTGATGAGGTTTCTGTTTTTGTGAATTTCTTGTTTCTGGTTGGACTGAAGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATATGTTAGTCAGCCACCACCATTTCCTGTTGTCAGACTACGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTTGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTGCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCAAATGAAGTTTTCGATGCGCGGGGTGGGTCACCGAGAAGAAGTGCGCCCAGGGCCAAGTTAAATGATGAGGTGAAAGACTCTGCTGAACACACTGGTGTATTACGCTTGAGAGGACTGCCATATTCCGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCAGAAGACTCGATTCATTTAACACTGAATTCAGAGGGCAGGCCAAGTGGGGAAGCATTTGTCGAATTCTCAAACGAGCAAGACTCGAAAGCAGCCATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATCGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGGCGGTGACACCATCTTCTACTCACTGTTTTTCTTCAATTACTCTGTTGTTTTGCTTTTGAAGCAGTGAGATCTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTGTTTGCCAGTCGAGCATGTCGTTTCGCTCTCGACTGCATGAATTTGTGAAAAGAATTTGGTTAAGTAGGCCTCT

mRNA sequence

ATGATGAAAATAGGGAATCCAGAACATTCGGGGTGGGCGGTTAACGTGGAATCTGGCGGATTCCAAGCCACATTTCACAATCCAACTGAAGCTGCGAGGCCATTCAACAACAACTGGGTATCCCCTATCAGCATGAACATGTTCTACCGAGGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATATGTTAGTCAGCCACCACCATTTCCTGTTGTCAGACTACGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTTGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTGCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCAAATGAAGTTTTCGATGCGCGGGGTGGGTCACCGAGAAGAAGTGCGCCCAGGGCCAAGTTAAATGATGAGGTGAAAGACTCTGCTGAACACACTGGTGTATTACGCTTGAGAGGACTGCCATATTCCGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCAGAAGACTCGATTCATTTAACACTGAATTCAGAGGGCAGGCCAAGTGGGGAAGCATTTGTCGAATTCTCAAACGAGCAAGACTCGAAAGCAGCCATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATCGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGGCGGTGACACCATCTTCTACTCACTGTTTTTCTTCAATTACTCTGTTGTTTTGCTTTTGAAGCAGTGAGATCTATGGAGTTAGAAGTGAATAGGAGAGCTAAGTTTGTTTTGTGTGCTTATGGTAACCATACATTCTCTGTACTTTCCAGGACCATTGTTTGCCAGTCGAGCATGTCGTTTCGCTCTCGACTGCATGAATTTGTGAAAAGAATTTGGTTAAGTAGGCCTCT

Coding sequence (CDS)

ATGATGAAAATAGGGAATCCAGAACATTCGGGGTGGGCGGTTAACGTGGAATCTGGCGGATTCCAAGCCACATTTCACAATCCAACTGAAGCTGCGAGGCCATTCAACAACAACTGGGTATCCCCTATCAGCATGAACATGTTCTACCGAGGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTCGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATATGTTAGTCAGCCACCACCATTTCCTGTTGTCAGACTACGAGGTCTTCCTTTCGATTGCATGGAAACTGATGTTGTTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTTGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTGCAGGTTGATTTTGCCCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGTCAAGAATACTACAAGGCTGTAGCAAATGAAGTTTTCGATGCGCGGGGTGGGTCACCGAGAAGAAGTGCGCCCAGGGCCAAGTTAAATGATGAGGTGAAAGACTCTGCTGAACACACTGGTGTATTACGCTTGAGAGGACTGCCATATTCCGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTAACTTATCAGAAGACTCGATTCATTTAACACTGAATTCAGAGGGCAGGCCAAGTGGGGAAGCATTTGTCGAATTCTCAAACGAGCAAGACTCGAAAGCAGCCATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATCGAGTTGTTCCCATCATCACATGAAGAATTGGACGAAGCAATCTCTAGAGGGCGGTGA

Protein sequence

MMKIGNPEHSGWAVNVESGGFQATFHNPTEAARPFNNNWVSPISMNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR

Homology

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BLAST of ClCG02G023210 vs. NCBI nr
Match: XP_004142112.1 (heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_018007 [Cucumis sativus])

HSP 1 Score: 528.5 bits (1360), Expect = 3.9e-146
Identity = 258/260 (99.23%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 45  MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 104
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 105 RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 164
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 165 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLP 224
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 225 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 284
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 285 YIELFPSSHEELDEAISRGR 305
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of ClCG02G023210 vs. NCBI nr
Match: XP_038901811.1 (heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida])

HSP 1 Score: 524.6 bits (1350), Expect = 5.6e-145
Identity = 256/260 (98.46%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 45  MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 104
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 105 RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 164
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 165 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLP 224
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKD AEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDCAEHTGVLRLRGLP 180

Query: 225 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 284
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 285 YIELFPSSHEELDEAISRGR 305
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of ClCG02G023210 vs. NCBI nr
Match: TYJ96136.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 513.1 bits (1320), Expect = 1.7e-141
Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 52  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 111
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 99  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 158

Query: 112 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 171
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 159 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 218

Query: 172 FRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 231
           FRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 219 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 278

Query: 232 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 291
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 279 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 338

Query: 292 SHEELDEAISRGR 305
           SHEELDEAISRGR
Sbjct: 339 SHEELDEAISRGR 351

[Close]

BLAST of ClCG02G023210 vs. NCBI nr
Match: KAA0041416.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 513.1 bits (1320), Expect = 1.7e-141
Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 52  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 111
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 58  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 117

Query: 112 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 171
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 118 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 177

Query: 172 FRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 231
           FRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 178 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 237

Query: 232 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 291
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 238 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 297

Query: 292 SHEELDEAISRGR 305
           SHEELDEAISRGR
Sbjct: 298 SHEELDEAISRGR 310

[Close]

BLAST of ClCG02G023210 vs. NCBI nr
Match: XP_022986707.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 505.0 bits (1299), Expect = 4.6e-139
Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 47  MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 106
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA VSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 107 RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 166
           RGLPFDCMETDVVEFFHGLD+VD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGR 120

Query: 167 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYS 226
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APR+KL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 227 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 286
           AGKDDILDFFKGF LSEDSIHLT NSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 287 ELFPSSHEELDEAISRGR 305
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of ClCG02G023210 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-26
Identity = 72/199 (36.18%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 103 VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 162
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 163 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGV 222
           +++R++MG RY+E+F+S+R E    +            + S P +       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 223 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 282
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 283 RMTLGSRYIELFPSSHEEL 297
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of ClCG02G023210 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 121.7 bits (304), Expect = 1.4e-26
Identity = 72/199 (36.18%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 103 VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 162
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 163 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGV 222
           +++R++MG RY+E+F+S+R E    +            + S P +       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 223 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 282
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 283 RMTLGSRYIELFPSSHEEL 297
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of ClCG02G023210 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-25
Identity = 71/199 (35.68%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 103 VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 162
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 163 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGV 222
           +++R++MG RY+E+F+S+R E    +            + S P +       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 223 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 282
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 283 RMTLGSRYIELFPSSHEEL 297
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of ClCG02G023210 vs. ExPASy Swiss-Prot
Match: Q794E4 (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 118.2 bits (295), Expect = 1.6e-25
Identity = 71/199 (35.68%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 103 VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 162
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 163 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGV 222
           +++R++MG RY+E+F+S+R E    +            + S P +       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 223 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 282
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 283 RMTLGSRYIELFPSSHEEL 297
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of ClCG02G023210 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-25
Identity = 70/199 (35.18%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 103 VVRLRGLPFDCMETDVVEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 162
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 163 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGV 222
           +++R++MG RY+E+F+S+R E    +            + S P +       D+A + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADTA-NDGF 131

Query: 223 LRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKD 282
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+F++++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 283 RMTLGSRYIELFPSSHEEL 297
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of ClCG02G023210 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.9e-146
Identity = 258/260 (99.23%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 45  MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 104
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 105 RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 164
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 165 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLP 224
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 225 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 284
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 285 YIELFPSSHEELDEAISRGR 305
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of ClCG02G023210 vs. ExPASy TrEMBL
Match: A0A1S3BMM3 (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.9e-146
Identity = 258/260 (99.23%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 45  MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 104
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 105 RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 164
           RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 165 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLP 224
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 225 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 284
           YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 285 YIELFPSSHEELDEAISRGR 305
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]

BLAST of ClCG02G023210 vs. ExPASy TrEMBL
Match: A0A5A7TH86 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00630 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 8.1e-142
Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 52  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 111
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 58  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 117

Query: 112 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 171
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 118 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 177

Query: 172 FRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 231
           FRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 178 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 237

Query: 232 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 291
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 238 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 297

Query: 292 SHEELDEAISRGR 305
           SHEELDEAISRGR
Sbjct: 298 SHEELDEAISRGR 310

[Close]

BLAST of ClCG02G023210 vs. ExPASy TrEMBL
Match: A0A5D3BB71 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001040 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 8.1e-142
Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 52  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 111
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 99  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 158

Query: 112 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 171
           DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 159 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 218

Query: 172 FRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 231
           FRSNRQEYYKAVANEVFDARGGSPRRSAPR+KLNDEVKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 219 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 278

Query: 232 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 291
           ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 279 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 338

Query: 292 SHEELDEAISRGR 305
           SHEELDEAISRGR
Sbjct: 339 SHEELDEAISRGR 351

[Close]

BLAST of ClCG02G023210 vs. ExPASy TrEMBL
Match: A0A6J1J8B6 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111484376 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.2e-139
Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 47  MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 106
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA VSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 107 RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 166
           RGLPFDCMETDVVEFFHGLD+VD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGR 120

Query: 167 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYS 226
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APR+KL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 227 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 286
           AGKDDILDFFKGF LSEDSIHLT NSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 287 ELFPSSHEELDEAISRGR 305
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of ClCG02G023210 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 375.2 bits (962), Expect = 5.1e-104
Identity = 191/295 (64.75%), Postives = 220/295 (74.58%), Query Frame = 0


Query: 47  MFYRGSYADGGDGREMGAKRQRIVDQG--SSYYGTSPGSGFMYNTSPYAYVS--QPPPFP 106
           MFYRG Y DG DGREMG KRQR++DQG    +YG  P SGFMYN  PY +V+   PPPFP
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFP 60

Query: 107 VVRLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQ 166
            VRLRGLPFDC E DVVEFFHGLD+VD+LFVH+N K TGE FCVLGYPLQVDFALQ+NRQ
Sbjct: 61  AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQ 120

Query: 167 NMGRRYVEIFRSNRQEYYKAVANEVFDAR------------------------------- 226
           NMGRRYVE+FRS +QEYYKA+ANEV ++R                               
Sbjct: 121 NMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRI 180

Query: 227 --GGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLT 286
             G SPRR   RA+ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFK F LSED +H+T
Sbjct: 181 SGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVT 240

Query: 287 LNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 305
           +N EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 241 VNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of ClCG02G023210 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.4 bits (581), Expect = 7.7e-60
Identity = 121/255 (47.45%), Postives = 168/255 (65.88%), Query Frame = 0


Query: 56  GGDGREMGAKRQRIVDQGSSY--YGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPFDC 115
           G  G E+G+KRQR++ Q + Y   GT P S       P+ Y      FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS-----FPPFGYAG---GFPVVRLRGLPFNC 69

Query: 116 METDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFR 175
            + D+ EFF GL+IVD+L V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 176 SNRQEYYKAVANE----VFDARGGSPRRSAPRAKLNDEVKDSAEHTGVLRLRGLPYSAGK 235
            ++Q+YY AVA E     ++ R   P     RAK   E K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 189

Query: 236 DDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELF 295
             I++FF G+ + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 296 PSSHEELDEAISRGR 305
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]

BLAST of ClCG02G023210 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-35
Identity = 72/158 (45.57%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 151 LQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANE----VFDARGGSPRRSAPRAKLND 210
           +QV+ ALQR+R NMGRRYVE+FR ++Q+YY AVA E     ++ R   P     RAK   
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60

Query: 211 EVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSN 270
           E K+  E+T VL++RGLPYS  K  I++FF G+ + +  + +    +G+ +GEAFVEF  
Sbjct: 61  E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 120

Query: 271 EQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 305
            ++++ AM+KD+M++GSRY+ELFP++ EE   A +R R
Sbjct: 121 GEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]

BLAST of ClCG02G023210 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 44.3 bits (103), Expect = 2.1e-04
Identity = 27/99 (27.27%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 202 AKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPS-GEA 261
           A+ +  V D    TG L +R LPY+A ++++++ F  F    + +HL L+ E + S G A
Sbjct: 280 AQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE-VHLVLDKETKRSRGIA 339

Query: 262 FVEFSNEQDSKAAMSK-DRMTLGSRYIELFPSSHEELDE 299
           ++ +   + +  AM + D  +   R + + P+ H E  +
Sbjct: 340 YILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

The following BLAST results are available for this feature:

BLAST of ClCG02G023210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142112.1	3.9e-146	99.23	heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PRED...	[more]
XP_038901811.1	5.6e-145	98.46	heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida]	[more]
TYJ96136.1	1.7e-141	99.21	heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0041416.1	1.7e-141	99.21	heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022986707.1	4.6e-139	94.96	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima]	[more]

BLAST of ClCG02G023210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52597	1.4e-26	36.18	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	1.4e-26	36.18	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9Z2X1	1.6e-25	35.68	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]
Q794E4	1.6e-25	35.68	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp...	[more]
Q5E9J1	2.1e-25	35.18	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]

BLAST of ClCG02G023210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L205	1.9e-146	99.23	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV...	[more]
A0A1S3BMM3	1.9e-146	99.23	heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150...	[more]
A0A5A7TH86	8.1e-142	99.21	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A5D3BB71	8.1e-142	99.21	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A6J1J8B6	2.2e-139	94.96	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of ClCG02G023210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	5.1e-104	64.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	7.7e-60	47.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	2.9e-35	45.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	2.1e-04	27.27	nucleotide binding;nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 103..172 e-value: 0.12 score: 14.6 coord: 217..289 e-value: 2.0E-8 score: 44.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 219..286 e-value: 1.1E-9 score: 38.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 216..304 score: 10.189634
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 89..189 e-value: 1.0E-19 score: 72.3 coord: 198..303 e-value: 4.7E-30 score: 105.7
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 47..304
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 47..304
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 217..289 e-value: 3.99765E-31 score: 109.569
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 103..172 e-value: 1.67E-21 score: 84.1459
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 93..181
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 209..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G023210.2	ClCG02G023210.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding