ClCG02G022900 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G022900
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein LATERAL ROOT PRIMORDIUM 1-like
Location	CG_Chr02: 37303755 .. 37314180 (-)
RNA-Seq Expression	ClCG02G022900
Synteny	ClCG02G022900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTGGAGAAGAAAGGAAGATGATAAAATGAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCTAAAATTCTGTCTCCATAAACTCCACTTTCTTTTTCTTTCATCTGCTTCCACCAAAAAGCCAAAGTTTGTGACAGTAATCAGTCACCAACAGAAGCCGAAGCCGAAGCAGAAGCAGAAGCAGAAGAAGCAGTAGTAGTAGCAGCAAAAGCAGAAGCAAAAATTATAAAAGCCCTCCAAGAACACCAACACCAACACCAACAACAACAACAACCAAATCCTAATTTTCTTCTTTTTTTTTTTTTTTTTTTTTCAAAAAAAAAAAGGAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTGTCTACAAAATCTCTCTGCTAGAAATTCAGAGAGACCCCACTTCCCATATAACGCCTACATAGATTGAGTTTCCACGATCCAAAATCTTTTTCTCTTCAAACCCCAACCCAATATTTTTATTTTCTCCCCTCATTTTCCCATTTTTATTTATATATATATTTATTTATTTATATATAATTTTGTTTTTCCATATTTAACCCCATCCTCCGCCTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGCGCTTTCGCAGACTGGGCGGCTCCGTCTTCCTCCGCCGCCCGCGCTGCACCTGATGATCTCTCTCTCGGTTTCAATGCTGGTCCCTCCGCCGGACCACCTCCTGGACCACCCGTCTCCATGTGGTCCGCCGCCGCTCAGCGGTCTCTCAATTACGGGCTTGGATCGGAGATGGGAATGGTCGGCCTTCGTGACGTATATGTCGTTGCTCCTGCGTCTACTTTCAACCCGAATCCTCACCCACACGACGCTAATCTCATGTCCGATCCTCATTCGCTTGCTGTCTCGAACCCCGCCACCGCTCTTGGCGTTGGAGTAGGCGTTGGGGTTATTCCGTTACTCACCGCCGGCCCCTGCCTTGGAGTTGAGGAGGACAATCTCTTGGGTAATCGGAGTAGTAGCAGAGGTGGAGGGATTCAACTATGGCAGCAGAATCAACAATCGTCACAACATTATTTGAAGAAAACGGCGTCGTCTTCTCTCGATCATCACCTCCATAATGCCTCCGCTACTAACAATGAATTGATCGGTGGGGGAATCGGCGGTTCCAGCGGTTTGGCTTCGTCGACGTCGGCGACGACCACGTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTAGCCATAGACGCTGCAGAACCTGCTGTCGGAGCCGAGGGTTCGATTGCGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCGCGACGGAGGGAGCGGCAACTTATGGCCGTTACTGCTACCGCCGCCGCTGGCTCCTCGGGCTCCACCTCCGGCGCGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCATACTTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAGTCATCAAGGCAAGAACAATTTCTCCGGAATTTAGGGTTTGTTTCTTCATTTTCGGTGTCTTTTCTTAAATTGTTTAATTATTTTAATTCAGATGCTGGATTTAAAGAAGCACTACCGAGCCAAGTACAAGCACGGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTACGCATACCAAGCGGTGGTGAAGATTGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTGGAAGCCGGAGATGGCTTTCCTAATGTATCGGAATTACACTTGGGCGACGGCGGTGGCGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTTCTCCGCTTGTCGATCCATCGGATGTTTACAATGCGGCCGCCTCGGGCGGCGGCGGCGTTCCGGGGTTTCTCGCTGGTTCAAATTATGGTAATCAAATTAGCTGATATATTTTATTCTGATTTTCTTAACGGTTTCAAGGTTCTTCACCAAATCAATGGGAACCAAAGGATCTGCAACTGTGTAATCTCATCTGACTAACCAATCTTTCTTTAGAATCAATTTTATTTATGTCTCATCTGCTTGTGTATATCCAATTTCTTTCAACTCTGATCTTGCAACTTTTATCATTGACTGAGTCATTTAATCCATTCCCCATTTCATTAACCCATAATTTCAATTTTATTTTCTGTGGTTTCTGTTCTTGATTTCACTAATTCCAGATGGGGTAAAAGAAAATGTTATGATGATTGCTATTACCTGCATGCTTCTTGCTTTTTACATTTTTCCTCTTATTCTTTTCTTGATTTACAAATCTTCTCTAGGCTGAATCTACAGTATTTTGTTGATTATTTTAATATTAGATTCAGCTGATAATCATAGGGATGTGAGCCATCTTATCTCTTGTGTTCATATTTGTCTTGTGTGCGCTCACTGTTCACTCATGTGCCTAACAATTTCTTGTTTTTCAAAGCAAAATCCCATTTGAAACGATCTGCCTTTTTACTTTTTTCTTTTACTTGTTATAGTTTAATCATGTGTGTGTGTGTGTCTCTTGATGGGTATGGAAATATATTCCTAACCAGTTAGCATTTTTCTATTTGGTTGGTTTGGTATATAGTTTGGTTCTTTAGGATAGTGTGTTAAAGTTTCATGAGAGCTGCAAATGCTGAATTTCATTGTGAGGTGCTGGATTTAGTCTTTTGTTTTGAAAGGCTGCTGAGGTGTCACAATCATAAGCTCTTTGAGAAAATGAAAACATTGAAAATGATGGCTTTTTCCCCCTTCCACTGTTCCACTTCTTTTAGTCCACCAACATGTCATCTTCATTCTTGCTTCTGTTGTATTTTGTTGTGTCCAATTTTTATATATCCAATGAAATTGTTTGTTCTATATATAACAAAACTTTATTGTCTAGCTATTAATCTTTCCTTCCTCACTTTAAAATCTCGGGAGGCTTAGGGGGTTAAGTTTGTTACTATAGTTTGTATTTGAGGTTAAGTTTGTTACTGTAGTTTGTATTTGAGGTGAAACTATTATGACCATTTTTTTAGTATCTATTTTCATTTTGTTTACTTGTTTACAACTCATTCCGAATATATCTCACTAGTTTTATTGTTTAAATAAGTTTGCATCTGGGTTGTTTTTATTGGTCCTTTACTTCATTGCTGATCAACCTGTAAGATTTTATATTATTGCCCTTATCATTTCACGTATATATTAAAGACACTATGTTGGATTTTCGTTGTTGTCATTTTCGCGTCTATTTTGTCTGTTGTTAATAGGGCAACAGTCCTTTGAAATGCTGAGTAAGCCTTTTTGTTTTTAAAATAAAACAAAACAATTCATTGTTGTATGTCATTCTTGACCTAAATTCATTTTTTATTCTAAAGTGGCCTTTGCATTGAATGCTTGCATTTTGCTTGTTATAAATGCAAAGGAGTGGATAGATTTTCTCCTTGGATTTCTTCATAAGTACTTAGAAATTGTTGGTACCTTTTGGAACAATCTTTACATTTCCCAGATCTGCACATTCAGATTGTTCTGTCTGTTTTTGAGCATACAGATGCTGCCAGTATAAGGCATTTAGGAAGCTTAATTATCAAAGCTCCTAAAGCAAAGATAAGTATATGGATACAATTATTAATTTAATGCTTCGTTGTTTTATTTTATTTTTTTCCATTTGTTTTTTATTGGTGTTATTGGAAGCTGAGGATTAATTATTTTATTGATTAGTTCCACCTGTGATTTCTTTATTTTTCGTATATGCATAAAATAGTGGAATTATTTTCCTAAATTTCTGGCTTCAACCTTTGATTATTGCTGGTGCCTGATTGGATATAATATAGCCATGGGATAAAGCATTTCCTTGTAGAAGTAAAGAATTAATTTTTATATGACCTTGTATTGCTTGTGTAGACTCATGTATTTTCCTTTTATCTTTTCATTTTTATTTTAATTTTGTTGGGTAATTATTGGCTTCTTGCTTTCATTTATTGTTGTATTCTGTGTTTCCCAGTTTAGCTTGTCTGAATATTTCACCTACTCAATGGCTAGATCGGACAGTAAGCCTATTTTTATATATTAGTGCTTGTTTTCTTCTTCTCTTTCACATTTTCTCCTGAATCTAGAGAGCCAGGCAGTTTCATATCATTCTTATATAATATGTTTCTCATCTTTTTACGAACAATTTGAATGGACATCCTTATATGCTCTAGTAATGTGAATGCTCTCTCTTGCTTGTCGAACGTAAATTTCAGCACATCTAATATTTCTATCGATTGTGTTAGTGTTATTTTGCGAAAATAGCTGTCGATTTGTTTGGAGATGATGCAAAAACTGGATGGAAATGATCTCTTTCATCCAAGATTTGGTTTAATATGATTTTAGATATTGTTTATGAACCGAAGAAGATGAATGCCATCTAAACTAATTTCTCTAGGATTTGTTATAAACTTTTGTGATTTGTCAATCCAATGCTCAGTGTTTTGGGTTATTTTATGTATGTTCTGAGATCTTCTGTCATGTTTGTAGTGGAAGAATTAGGTTTTTATTTGTCTTTCCTTCAAGTGGTTGGGTGGACTGCTTGGATTTTGATTTAGAAAAATTCTTTTCCTCTTGAGATCAGCTTTGTGAATGGCTTTAAAAAGAAGAAAAAAAGGACCCATCTTCACTTACGCAGTTCTTTTTTCAATTTTACTTTTTTGGTTGCCTCTATTTTGAGTGCAAAATTGACTGACTCCTTGCTAAGCCTGTATTTCCAAAACAAACTAAAGAATCTTTTGTATTATTATAACCCACTTTCTACTTCTAGGGTTTTAGGGTTTTAATTGTGTAGACTAATCGAATCTTTTTCAATTTTGATGAGGTGAAAATAACTGACTTTTGATTGTGTCAGACATGCATAAACTAATAATTTTACTTTTGTGAGAGTGGAAGGCACTTAATTAGATAATCAAAGATTTAGAATCTATATTTTTCGTGAGAATATGGTTTTTAAGGATTTGTGTGTACAATCAATGGTTGATGTTGCATCTAAATGTGAATGGACTTGTTGCTACTTTGGTTTTGTATTCGATCGAACTTTCTTTAAACTTTTCGATGGTTGACAATGATATGAAGGGTTGATTTCATTACTTAATATTCGGTATAGTTTTCATTTGGTTCTCTTAATAAAAAAGAGTTAAATTTGTATAGATACTTTTGTTTATTGGTTTCAGTGTTTCGTTGCTTATTTTTATGAGTGTTTTTTAAGAATAAAGATAATTTTAGAATACTAAATAAAGTTATCTTTAATGACTTTGTTTTGTCAATGAAATTTGGCTGAAGTATCAATGAAAATATTTAATAAAAAATCATTTGAGTTTCTCATAATTTTCTTTAGGATGATTTTCATCTTTTAAGTTAATTTTTGTACTAATAGCCAAATTTTTTAAAACAAAAATGAGACACTAAAAGCTTTTTTTAAGGCAATCCTTTTGTTTTTTTGTTTTTTTGTTTATTGGTTTTTTGGTATTTGAAAATTAAATTTATTTTTTCTCTTTTTTCTTTTTAAAGAGAGTTGGAAATTCTAGCCAAATTCTAAAAATCTTGTCTTGGTTTTTGTAAACATCGGTAAAAATTAAATAACAAAACAATAAATAGTGAAGAAGAAGATTTAAAAACGAAATTGTATGATGTGAAGCCTAAGCCTAAGGCATTATTTGGTAGAGAAATAATACTATTCTTTGGTAAATCTATACATTCCTCAAAAATACATTTGAATTTTAATTAAAATTAAGTCAAAATCTGCTTTTGAAAAATATTTGAAATAAATAGACTATAAAGAAAGGAGAAATAGGTAGGATACTAAGAGTAGTGTGGAAAACCTACTGACTTCAACATAGTTCAAAAATTATGTTATTTTTCTATTTTTAAACGAAAAGGAAAATTTCAAATCATTAAATTATTTTTAATTATTTTATATAAATATAAAATAGGTCTCAATATTTATAAATATATCAATATTTTGCACTATTATGTTATTAGTTATAAATATTTCAGTAATTTTGGGTAATATAATTTTCCTATAAAATAGAGCATTATTCAATTAGGAGTAGAGAAAGTAGGGAAAACGTTAAACTACAAATCGATACGGATGGTGGTTTTACTTTCTACGTGAAGTTTTTCTCTCTTCCTCCACCATCTTCATTTCTTCGATTCTGTAATCTTCTCTTCAGATCGACAGTCGTCGATCTGTCGATCGCGGTTCATTCGGTTTCAATTTCGCCGGAAACCACCGCCTGGTTGTCATTTCGATCGCGAACATTAACGCTATCGATCTCTCCGGCGAGCGGCGAGGTTTTCAGGTACGCTTCTCGCGTTTACATTAGCAATTAATACTTTCCTTTGGCGGTGATTTGAGGCGTTTTTGCACTTGTTTTAGAACTGAATCGAGAAATTTAGGAAAAGAAAAAAATGGTGAAAATGAAGTTGAATCGGAAATGGAAAAGTTAGGTTTGAATGGAAAAAGGTGGGGATGGGAGGAGAGGTTAAGTTAAAGTAAAGTAGGAGTTTGAGACTGAGAGCCTAAAACCTGTGTGTTTGTTTGTTTGTTTGGGGTATTGGAATGGCATTGTCATCAAATCTGGGTCTGAGCAAGAGAATCTTCACTGCTTCCTTCACTTTAATTCATCGCCTGCACGCTGCCACCACTTTTTTTTTTTTTTTCTTTTATTTTCTTCCTATTTTCAATTTTTTTTTTTTGGAGAACTTCAATTTTAACCCTACATGCATGATGCATCCATCAAAAAGTATACGAATAAATAATGTTTTTTTTTCCAAAAAAAAAAAATTCGAGTGAATAATGTTGCAGTTATTGGAGGCAAGGTATTAAATTTTGGTCCGGTTTGATGATATTTACACATTTTGATTAGAGGTTCATTAGAGGTGTTTGTAGGTTGGGTCAATTGGTTTTGTTAGAAACACTTTTTAGACATGACTCAATTGTTCTGTNCATGATGCATCCATCAAAAAGTATACGAATAAATAATGTTTTTTTTTCCAAAAAAAAAAAATTCGAGTGAATAATGTTGCAGTTATTGGAGGCAAGGTATTAAATTTTGGTCCGGTTTGATGATATTTACACATTTTGATTAGAGGTTCATTAGAGGTGTTTGTAGGTTGGGTCAATTGGTTTTGTTAGAAACACTTTTTAGACATGACTCAATTGTTCTGTGTGTGTGGAAGTTTCTATAACTCAAATAGTTCTTATCACATAATGAATCCGGCTCAACCCAATCATGAAGAATATGAGTTGGGTTGGTTTGTATTAGTTGTGTCATTTATTTAAATTTTTACTATAAATAATTTTCATATATTGAATTAAGATTAACATAATTTTGTTTTTCCAAAGTCCTAAAATTTTTTAGGTGTGGTTGGAAAGTAAATTATCTAAAAAAGTTCATGATATTGAATTAAACTAAAATAAATATATGTATAAATAGTTATGTTCTATAGTATTAAATTTTCATTGACATGTCAAAATTTACATATTTCAATGAGTTCTAAATCGACACAAGGAGTGAATTGATATCTCCATTATATTGTAGAAAGATTCACGAAAACACAAAAAATTGCATCAAAATGCCACTAATATAAATATAATATAAATAATAGACACGTTAACTTGTTTGAAAATCATAAAATACTTATTAACTAATTTAAATTTATTTTTTGAATGTTTTGTTTTTATCACTTTTCTTGAAATATCCATCGAAATTGACATTTTATCAATGTTTTTGTTAAAATTTCCATAAAATAAGACTTTGGTATTTTCATGGATATTAACATTTTAAACCTAGCGATAAGTAAAAGACCTATATGAAATTAATAAGAATTTTTGATTAGATTATTTTAGGTGATGTTATGAACCAACCCAATTTATAAAATTTTTATTTATTCAAAATCAATTCGAATTCAAATGAATTGATAACCCAACCTAAACCATAAATTAGGTTGGGTTGAGTTAGTTCAAATTGGATTAGGTTGATCAGATTTTTTTTTTTCTAACACACCTAATTTTCATATTATGGGTGGAAATATAGAGGTGAAAAAAAGCAACAAAATCTTTCAGTAATATGAAATATAATAGGAATAAAGTTTAAATACCTATGTACTTTGGTTTTGATTTTGGTTTGTATATTTTCAAAATGGTTTGTTTTGGTTTATTTTTTTAAAACTTTTCTTCATTTTTTAAATGCACTTCAATAAAGTAACCAAAAAGATATTTGAGAAAGATATTGTTCTGATAGTTGAGATTTGGATTTTCTGTATGCTTTGTATATATATTGCTGATGGTCTGTGTGTACATACATTTTTTGAAGATAACATTTGTGATATAAATTCCCATTCTTATTTTTTATGTTTGAACCTTTATCCTCAATAATACTGCTGAACTTTGCTCAATTTGAAGTATGAATTCACATTCTTATTTTTTACACTTTATTATTTTAGATTTTGTTAATTCTTATCCTCACGAACATAATAAAATAATTCTCCTAATTAAGATAAAGAAATTTGAAGATGTTTCTTCAAACAGTAAATGTTTTGATTAAATTAGACAATTTTATATAAATTCAATATGCTACTTTTTTTACGGATTTTTTTTTTTAATTTATAAATATACTTTTGAGCCACATTTATACCTGGTGAAAGATAATGTTAAAAGTGGGATCCAATTGAAATAGTTTTGTTGTTGTTCACCTGTTTTGGTAATCCTAATGAGTTGTGAGACCCACCTTAAAGTTTGTAATAAAATCTTCCAATATAATTGAGGAATGAAAGGTGTTTAACTGATTGCAGTTGAAAATTATGTAAGACTCACTACCGTTGCCGTTATCATAACTGTTACAAATATTGCTACTGTAACAATATGAAAATTCTGAATCTGTCACATGTATTATTACCTTTACTATTAACGTTACTGTTTTTACGGTTACTTTTACCTTTACCTTTAATGTTACCATTACCATTAGAGTCAAGCAGTAACAAAAACGATAACAATAACCGTAAAATATGATAGATTTATAATTTTAGATAAACACGATTAAGAGCGATCCAATTATGTTTACGATTTAGATGTATTACGACTCATCCATCAATGAGGTCTCATTCGTGGCCCTAATTCAAAAAAGGATCATAAATCACTTAACCTTTCGACTTTTACAATTTAATCTTCTATTTGCTCAATTTTTGTTACAATAATGTAACAATTTTATCATTACATGCATCAATCTCGTTGTAAAGAAGCCAATATTTAACTCAAATACTCTGGGGGAAATAAGTCAACGATTATTAACAAGAGAAATTGGTAAGCTTAAAACGTGTTTATAAACTAGCTATGTTACTGAGATTTTCCAGGGTAGTAATGGGACTAAATTGGCACAAATTTTAAAGTTCACAAGACAAAAATGTAATGTGTAGGTCGTACCACTGAATTTTTAACTTATTACTTCAAACTAAGTTTAGAGGTTAAGTTGTCATTAACATAGAAAGGTCAAAGCTAAAATATACATATAAAATCGTTTAAAAGATAAAAGCCCAAACTAAGAACCTACCGGTGGCATATAAATAGATGCTTAACTAATAAAACAAATTCAACTTAAAAGGGAACGAAAAATATATTTGTAGGGTCCAAAACAAATTAAACTTTTTTTTTTTCCAGCAATTTTCATAAGACTGATAAATTTTCCTACATATTAAAGCCAATAGATCAAAACTTTGATTTCCCTCAACTATGTTGTTTCCACAGTTGAAACACTGATTCCAGTGAGCTCGACCTGCGCCACCGCCGTGTTGATTGCGTCGATGACGTCCATTTTCCCACGAGTCAGAGCTTCATCCATGGGAGTTCTCTCATGGCTATACACATAAACAACATTTTAAAGATCCTTGTTATAATGTCTGAATTAAATCTCACAATTAATTATAAAACAACATCACGTACCTGTTCAATACGCTCAAATTAGCTCCTGCCAAGATCAACTTCTTCACCACCTAAAGAGAATGAGTAAAGGATCAATTAAAAATTGAAGAATTATTTAAAGAAACCTATTAGACATAGTTTAAAAATCGG

mRNA sequence

ATGGAAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGCGCTTTCGCAGACTGGGCGGCTCCGTCTTCCTCCGCCGCCCGCGCTGCACCTGATGATCTCTCTCTCGGTTTCAATGCTGGTCCCTCCGCCGGACCACCTCCTGGACCACCCGTCTCCATGTGGTCCGCCGCCGCTCAGCGGTCTCTCAATTACGGGCTTGGATCGGAGATGGGAATGGTCGGCCTTCGTGACGTATATGTCGTTGCTCCTGCGTCTACTTTCAACCCGAATCCTCACCCACACGACGCTAATCTCATGTCCGATCCTCATTCGCTTGCTGTCTCGAACCCCGCCACCGCTCTTGGCGTTGGAGTAGGCGTTGGGGTTATTCCGTTACTCACCGCCGGCCCCTGCCTTGGAGTTGAGGAGGACAATCTCTTGGGTAATCGGAGTAGTAGCAGAGGTGGAGGGATTCAACTATGGCAGCAGAATCAACAATCGTCACAACATTATTTGAAGAAAACGGCGTCGTCTTCTCTCGATCATCACCTCCATAATGCCTCCGCTACTAACAATGAATTGATCGGTGGGGGAATCGGCGGTTCCAGCGGTTTGGCTTCGTCGACGTCGGCGACGACCACGTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTAGCCATAGACGCTGCAGAACCTGCTGTCGGAGCCGAGGGTTCGATTGCGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCGCGACGGAGGGAGCGGCAACTTATGGCCGTTACTGCTACCGCCGCCGCTGGCTCCTCGGGCTCCACCTCCGGCGCGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCATACTTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAATGCTGGATTTAAAGAAGCACTACCGAGCCAAGTACAAGCACGGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTACGCATACCAAGCGGTGGTGAAGATTGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTGGAAGCCGGAGATGGCTTTCCTAATGTATCGGAATTACACTTGGGCGACGGCGGTGGCGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTTCTCCGCTTGTCGATCCATCGGATGTTTACAATGCGGCCGCCTCGGGCGGCGGCGGCGTTCCGGGGTTTCTCGCTGGTTCAAATTATGATCTGCACATTCAGATTGTTCTGTCTGTTTTTGAGCATACAGATGCTGCCAGTATAAGGCATTTAGGAAGCTTAATTATCAAAGCTCCTAAAGCAAAGATAAAGCATTATTCAATTAGGAGTAGAGAAAGTAGGGAAAACGTTAAACTACAAATCGATACGGATGGTGGTTTTACTTTCTACGTGAAGTTTTTCTCTCTTCCTCCACCATCTTCATTTCTTCGATTCTGTAATCTTCTCTTCAGATCGACAGTCGTCGATCTGTCGATCGCGGTTCATTCGGTTTCAATTTCGCCGGAAACCACCGCCTGGTTGTCATTTCGATCGCGAACATTAACGCTATCGATCTCTCCGGCGAGCGGCGAGGTTTTCAGTTGAAACACTGATTCCAGTGAGCTCGACCTGCGCCACCGCCGTGTTGATTGCGTCGATGACGTCCATTTTCCCACGAGTCAGAGCTTCATCCATGGGAGTTCTCTCATGGCTATACACATAAACAACATTTTAAAGATCCTTGTTATAATGTCTGAATTAAATCTCACAATTAATTATAAAACAACATCACGTACCTGTTCAATACGCTCAAATTAGCTCCTGCCAAGATCAACTTCTTCACCACCTAAAGAGAATGAGTAAAGGATCAATTAAAAATTGAAGAATTATTTAAAGAAACCTATTAGACATAGTTTAAAAATCGG

Coding sequence (CDS)

ATGGAAGTTGTGGCTACTACAAGGAGGTTACCTTCTGATTCCGGCGCTTTCGCAGACTGGGCGGCTCCGTCTTCCTCCGCCGCCCGCGCTGCACCTGATGATCTCTCTCTCGGTTTCAATGCTGGTCCCTCCGCCGGACCACCTCCTGGACCACCCGTCTCCATGTGGTCCGCCGCCGCTCAGCGGTCTCTCAATTACGGGCTTGGATCGGAGATGGGAATGGTCGGCCTTCGTGACGTATATGTCGTTGCTCCTGCGTCTACTTTCAACCCGAATCCTCACCCACACGACGCTAATCTCATGTCCGATCCTCATTCGCTTGCTGTCTCGAACCCCGCCACCGCTCTTGGCGTTGGAGTAGGCGTTGGGGTTATTCCGTTACTCACCGCCGGCCCCTGCCTTGGAGTTGAGGAGGACAATCTCTTGGGTAATCGGAGTAGTAGCAGAGGTGGAGGGATTCAACTATGGCAGCAGAATCAACAATCGTCACAACATTATTTGAAGAAAACGGCGTCGTCTTCTCTCGATCATCACCTCCATAATGCCTCCGCTACTAACAATGAATTGATCGGTGGGGGAATCGGCGGTTCCAGCGGTTTGGCTTCGTCGACGTCGGCGACGACCACGTGTCAAGACTGTGGGAATCAAGCGAAGAAAGATTGTAGCCATAGACGCTGCAGAACCTGCTGTCGGAGCCGAGGGTTCGATTGCGCTACTCACGTGAAGAGCACGTGGGTTCCTGCTGCGCGACGGAGGGAGCGGCAACTTATGGCCGTTACTGCTACCGCCGCCGCTGGCTCCTCGGGCTCCACCTCCGGCGCGAAGAAACCGAGGCTTATAGCCTCGCAAACCACTTCTCATACTTCCACTTCCAACACCACTCCTCCGAGAAGCCTCGATACGAGCTCCAATGCTGGATTTAAAGAAGCACTACCGAGCCAAGTACAAGCACGGGCGGTTTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTACGCATACCAAGCGGTGGTGAAGATTGGGGGCCATGTTTTCAAAGGATTTTTGTACGATCAAGGCGTGGAAGCCGGAGATGGCTTTCCTAATGTATCGGAATTACACTTGGGCGACGGCGGTGGCGGAAGCAGAAATAATCGGAATGGTTCTTCTTCTTCTCCGCTTGTCGATCCATCGGATGTTTACAATGCGGCCGCCTCGGGCGGCGGCGGCGTTCCGGGGTTTCTCGCTGGTTCAAATTATGATCTGCACATTCAGATTGTTCTGTCTGTTTTTGAGCATACAGATGCTGCCAGTATAAGGCATTTAGGAAGCTTAATTATCAAAGCTCCTAAAGCAAAGATAAAGCATTATTCAATTAGGAGTAGAGAAAGTAGGGAAAACGTTAAACTACAAATCGATACGGATGGTGGTTTTACTTTCTACGTGAAGTTTTTCTCTCTTCCTCCACCATCTTCATTTCTTCGATTCTGTAATCTTCTCTTCAGATCGACAGTCGTCGATCTGTCGATCGCGGTTCATTCGGTTTCAATTTCGCCGGAAACCACCGCCTGGTTGTCATTTCGATCGCGAACATTAACGCTATCGATCTCTCCGGCGAGCGGCGAGGTTTTCAGTTGA

Protein sequence

MEVVATTRRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLAGSNYDLHIQIVLSVFEHTDAASIRHLGSLIIKAPKAKIKHYSIRSRESRENVKLQIDTDGGFTFYVKFFSLPPPSSFLRFCNLLFRSTVVDLSIAVHSVSISPETTAWLSFRSRTLTLSISPASGEVFS

Homology

[Close]

BLAST of ClCG02G022900 vs. NCBI nr
Match: XP_023512287.1 (protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 701.0 bits (1808), Expect = 7.7e-198
Identity = 366/425 (86.12%), Postives = 383/425 (90.12%), Query Frame = 0


Query: 3   VVATTRRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWS--AAA 62
           VVATTRRLPSDSGAFADWAAPSSSA RA PDDLSLGFNA P+  PP GPP  +WS  AAA
Sbjct: 5   VVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPLWSAAAAA 64

Query: 63  QRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGV 122
           QRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLA SN ATALGVGV
Sbjct: 65  QRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAASNSATALGVGV 124

Query: 123 GVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLH 182
           GVGVIPLLTAGPCLGVEEDNLLG+RS SRGGGIQLWQQNQQS+QHYLKKT SSSLDHHLH
Sbjct: 125 GVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHLH 184

Query: 183 NASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATH 242
           NAS TNN+LIGGGIG   GLASS+SATTTCQDCGNQAKKDCS  RCRTCCRSRGFDCATH
Sbjct: 185 NASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATH 244

Query: 243 VKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLD 302
           VKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSNTTPP S+D
Sbjct: 245 VKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSID 304

Query: 303 TSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 362
           TSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 305 TSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQG 364

Query: 363 VEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLAGSNY 422
           VEAGDGFPNVSELHL DGGGGSRNNRNGSSS+P VDPSDVYNAAASG GG PGFL GSNY
Sbjct: 365 VEAGDGFPNVSELHLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSNY 424

[Close]

BLAST of ClCG02G022900 vs. NCBI nr
Match: KAG6570417.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 700.7 bits (1807), Expect = 1.0e-197
Identity = 375/455 (82.42%), Postives = 398/455 (87.47%), Query Frame = 0


Query: 2   EVVATTRRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWS--AA 61
           E+VATTRRLPSDSGAFADWAAPSSSA RA PDDLSLGFNA P+  PP GPP  MWS  AA
Sbjct: 6   ELVATTRRLPSDSGAFADWAAPSSSAGRAPPDDLSLGFNAAPAVAPPAGPPAPMWSAAAA 65

Query: 62  AQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVG 121
           AQRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLAVSN ATALGVG
Sbjct: 66  AQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNSATALGVG 125

Query: 122 VGVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHL 181
           VGVGVIPLLTAGPCLGVEEDNLL +RS SRGGGIQLWQQNQQS+QHYLKKT SSSLDHHL
Sbjct: 126 VGVGVIPLLTAGPCLGVEEDNLLASRSGSRGGGIQLWQQNQQSTQHYLKKTPSSSLDHHL 185

Query: 182 HNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCAT 241
           HNAS T N+LIGGGIG   GLASS+SATTTCQDCGNQAKKDCS  RCRTCCRSRGFDCAT
Sbjct: 186 HNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCAT 245

Query: 242 HVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSL 301
           HVKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSNTTPP S+
Sbjct: 246 HVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSNTTPPGSI 305

Query: 302 DTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQ 361
           DTSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVFKGFLYDQ
Sbjct: 306 DTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQ 365

Query: 362 GVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLAGSN 421
           GVEAGDGFPNVSEL+L DGGGG RNNRNGSSS+P VDPSDVYNAAASG GG PGFL GSN
Sbjct: 366 GVEAGDGFPNVSELNLSDGGGGGRNNRNGSSSAPFVDPSDVYNAAASGNGGAPGFLGGSN 425

Query: 422 YDLHIQIVLSVFEHTDAASIRHLGSLIIKAPKAKI 452
           YD     VL V E T AA   H  S++++ P++ I
Sbjct: 426 YDR----VLVVVEQTIAA---HFVSVLLEPPRSTI 452

[Close]

BLAST of ClCG02G022900 vs. NCBI nr
Match: KAA0061772.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa] >TYJ96114.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 690.3 bits (1780), Expect = 1.4e-194
Identity = 371/422 (87.91%), Postives = 385/422 (91.23%), Query Frame = 0


Query: 3   VVATTRRLPSDSGAFADWAAPSSSAARAA-PDDLSLGFNAGPSAGPPPGPPVSMWSAAAQ 62
           VVATTRRLPSDSGAFADWAAP+SSAARAA PDDLSLGFNA PSA PPPGPPVSMWSAAAQ
Sbjct: 2   VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQ 61

Query: 63  RSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVG 122
           RSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPATALGVGVG
Sbjct: 62  RSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVG 121

Query: 123 VGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHN 182
           VGVIPLLTAGPC+GVEE+NL GNRSS+RGGGIQ     QQS+QHYLKKT S SLDH    
Sbjct: 122 VGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGSLDH---- 181

Query: 183 ASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 242
            S TNNELIGGGIGGS GLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV
Sbjct: 182 VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 241

Query: 243 KSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLD 302
           KSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNTTPPRSLD
Sbjct: 242 KSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLD 301

Query: 303 TSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 362
           TSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFKGFLYDQG
Sbjct: 302 TSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG 361

Query: 363 VEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLAGS 418
           VEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGVPGFL GS
Sbjct: 362 VEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGS 415

[Close]

BLAST of ClCG02G022900 vs. NCBI nr
Match: XP_038902210.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Benincasa hispida])

HSP 1 Score: 646.4 bits (1666), Expect = 2.3e-181
Identity = 336/367 (91.55%), Postives = 345/367 (94.01%), Query Frame = 0


Query: 55  MWS-AAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPA 114
           MWS AAAQRSLNYGLGSEMGMVGLRDVYVVAPAS+FNPNPH HDANLMSDPHSLAVSNPA
Sbjct: 1   MWSAAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNPNPHQHDANLMSDPHSLAVSNPA 60

Query: 115 TALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASS 174
           TALGVGVGVGVIPLLTAGPCLGVEE+NLL NRSSSRGGGIQLWQQNQQS+QHYLKKT S+
Sbjct: 61  TALGVGVGVGVIPLLTAGPCLGVEEENLLSNRSSSRGGGIQLWQQNQQSTQHYLKKTPSA 120

Query: 175 SLDHHLHNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSR 234
           SLDHHLHNAS  NN+LIGGGIG S GLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSR
Sbjct: 121 SLDHHLHNASGANNDLIGGGIGVSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSR 180

Query: 235 GFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNT 294
           GFDCATHVKSTWVPAARRRERQLM VTAT AAGSSGSTSGAKKPRLIASQTTSHTSTSNT
Sbjct: 181 GFDCATHVKSTWVPAARRRERQLMTVTATFAAGSSGSTSGAKKPRLIASQTTSHTSTSNT 240

Query: 295 TPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFK 354
           TPPRSLDTSS   +AGFKE LP QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFK
Sbjct: 241 TPPRSLDTSSSHQDAGFKETLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFK 300

Query: 355 GFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPG 414
           G LYDQGVEAGD FPNVSELHLGDGG G RNNRNGSSSSPLVDPSDVYNAAASGGGGVPG
Sbjct: 301 GLLYDQGVEAGDAFPNVSELHLGDGGSGGRNNRNGSSSSPLVDPSDVYNAAASGGGGVPG 360

Query: 415 FLAGSNY 418
           FL G NY
Sbjct: 361 FLGGPNY 367

[Close]

BLAST of ClCG02G022900 vs. NCBI nr
Match: KAG6605936.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 642.5 bits (1656), Expect = 3.3e-180
Identity = 351/416 (84.38%), Postives = 365/416 (87.74%), Query Frame = 0


Query: 8   RRLPSDSGAFADWAAPSSSAARAAPDDLSLGFNAGPSAGPPPGPPVSMWSAAA--QRSLN 67
           +RLPSDSGAFADWAA SSSAAR+APDDLSLGFNAGP+  PP  P  SMWSAAA  QRSLN
Sbjct: 6   QRLPSDSGAFADWAASSSSAARSAPDDLSLGFNAGPTPPPPVVPSASMWSAAAASQRSLN 65

Query: 68  YGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVI 127
           YGLGSEM MVGLRDV+VVAPAS+FNPNPH HD NL+SDPHSLAVSN ATAL    GVGVI
Sbjct: 66  YGLGSEMSMVGLRDVFVVAPASSFNPNPHHHDNNLLSDPHSLAVSNSATAL----GVGVI 125

Query: 128 PLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASAT 187
           PLLTAGPCLGVEEDNLL NRSS+RGGGIQLWQQN     HYLKK   SSLDHHLHN SA 
Sbjct: 126 PLLTAGPCLGVEEDNLLSNRSSNRGGGIQLWQQN-----HYLKK-MPSSLDHHLHNPSAA 185

Query: 188 NNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTW 247
           NN LI  GIG + GLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDC THVKSTW
Sbjct: 186 NNGLIDDGIGITGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCTTHVKSTW 245

Query: 248 VPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSS-- 307
           VPAARRRERQLM VTA AAAGSS STSGAKKPRLIASQTTS TSTSNTTPPRSLDTSS  
Sbjct: 246 VPAARRRERQLMGVTANAAAGSSASTSGAKKPRLIASQTTSRTSTSNTTPPRSLDTSSSH 305

Query: 308 -NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEAGD 367
            +AGF EALP QV+A AVFKCVRVTAVDDGDDEYAYQAVVKIGGH+FKGFLYDQGVE GD
Sbjct: 306 QDAGFPEALPGQVRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHIFKGFLYDQGVEPGD 365

Query: 368 GFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGGVPGFLAGSNY 418
            FPNVSELHLGDGGG +RNNRNG SSSSPLVDPSDVYNAAA+GGGG P FL GSNY
Sbjct: 366 EFPNVSELHLGDGGGITRNNRNGVSSSSPLVDPSDVYNAAATGGGGAPCFLGGSNY 411

[Close]

BLAST of ClCG02G022900 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.7e-78
Identity = 190/351 (54.13%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 72  MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 131
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 132 -PCLGVEED--NLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNNE 191
            P   VE+   N LGN         + WQ N  + +             +LH  S   N+
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS--TNQ 120

Query: 192 LIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 251
              G    +SG  S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 252 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 311
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 312 SSN----AGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 371
           SS+     G +EA P QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 372 VEAGDGFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGG 408
           +E  +GFP++S+LHL    GGS NN NG S+S+P++DP +V      G GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of ClCG02G022900 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.2e-36
Identity = 108/256 (42.19%), Postives = 140/256 (54.69%), Query Frame = 0


Query: 159 NQQSSQHYLKKTASSSLDHHLHNASATNNELIGGGIGGSSGLA-SSTSATTTCQDCGNQA 218
           N  SSQ   +      L HH  +    + +L  G     S LA SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 219 KKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGA--- 278
           KKDC+H RCRTCC+SRGFDC+THV+STW+P ARRRERQ     +T+  G    + GA   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 279 --KKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEALPSQVQARAVFKCVRVTAVDD- 338
               P+     T   TS+S+  P  S         + + P +V + A+F+CV+++ VDD 
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG---EASFPGEVSSDALFRCVKMSGVDDG 221

Query: 339 GDDEYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELHLGDGGGGSRNN---- 396
           GD +YAYQ  V IGGH+FKG LYDQG E+     G G  +      G GGGG   N    
Sbjct: 222 GDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVV 281

[Close]

BLAST of ClCG02G022900 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-34
Identity = 98/255 (38.43%), Postives = 135/255 (52.94%), Query Frame = 0


Query: 146 SSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHL-----------HNASATNNELIGGGI 205
           S++  G ++LWQ + Q    +  +     LD +            HN    + E    G 
Sbjct: 62  SNAALGTLELWQNHNQQEIMFQHQQHQQRLDLYSSAAGLGVGPSNHNQFDISGETSTAGA 121

Query: 206 GGS-------SGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVP 265
           G +       SG +   S   +CQDCGNQAKKDCSH RCRTCC+SRGF+C+THV+STWVP
Sbjct: 122 GRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVP 181

Query: 266 AARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGF 325
           AA+RRERQ    T           S  K+ R     T+S    +       L+  +    
Sbjct: 182 AAKRRERQQQLATVQPQTQLPRGESVPKRHRENLPATSSSLVCTRIPSHSGLEVGN---- 241

Query: 326 KEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYD--QGVEAGDGFP 381
               P++V + AVF+CVRV++V+DG++E+AYQ  V IGGH+FKG LYD   G   G G+ 
Sbjct: 242 ---FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGGYN 301

[Close]

BLAST of ClCG02G022900 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.4e-34
Identity = 109/276 (39.49%), Postives = 143/276 (51.81%), Query Frame = 0


Query: 143 GNRSSSRGGGIQLW----------QQNQQSSQHYLKKTASSSLDHHLHNASATNNELIGG 202
           G    S  G ++LW          QQ QQ  Q     T+++ L         +N  LI  
Sbjct: 47  GEAGPSYKGTLELWQHPNNQEIIFQQQQQQQQRLDLYTSAAGL-----GVGPSNRSLIET 106

Query: 203 GIGGSSGLAS-STSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARR 262
             G    + S S S   +CQDCGNQ+KKDCSH RCRTCC+SRG DC THVKSTWVPAA+R
Sbjct: 107 SGGALMMMRSGSGSGGPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKR 166

Query: 263 RERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEAL 322
           RERQ    T        GS    ++ R+ A      TS + T  P +  +    G     
Sbjct: 167 RERQQQLSTGQQPQQLGGSVPKRQRERIPARS----TSMAYTRIPSNNTSGLEVG---NF 226

Query: 323 PSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG----VEAGDGFPNV 382
           P +V + AVF+CVRV++VDD ++EYAY+  V IGGHVFKG LYDQG      +G G   +
Sbjct: 227 PPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSSGGGSQPL 286

Query: 383 SELHLGDGGGGSRNNRN------GSSSSPLVDPSDV 398
           + +  G     S  N +      GS+S   +DP+ +
Sbjct: 287 NLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASL 310

[Close]

BLAST of ClCG02G022900 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.6e-31
Identity = 107/289 (37.02%), Postives = 143/289 (49.48%), Query Frame = 0


Query: 157 QQNQQSSQHYLKKTASSSLDHHLHNASATNNELIGGGI-------GGSSGLASSTSATTT 216
           QQ QQ  QH        S       +S+ NN      +           G   +      
Sbjct: 65  QQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQGGMN 124

Query: 217 CQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSG 276
           CQDCGNQAKKDC H RCRTCC+SRGF C THVKSTWVPAA+RRER     +    + SS 
Sbjct: 125 CQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSR 184

Query: 277 STSGAKKPRLIA------SQTTSHTSTSNTTPPRSLDTSSNAGFK--EALPSQVQARAVF 336
            T  AK+ R  +       +  S    S     R ++ +SN+G +  + LP +V + A+F
Sbjct: 185 ETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAIF 244

Query: 337 KCVRVTAVDDGDDE--YAYQAVVKIGGHVFKGFLYDQGVEAGDGF-----------PNVS 396
           +CVRV+++++ +D+  YAYQ  V IGGH+FKG LYDQG E  D              NV 
Sbjct: 245 RCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATTTNVE 304

Query: 397 ELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLAGSNY 418
           E       G   NN NG     ++DPS +Y A  +       F+AG+ +
Sbjct: 305 ETATKTVTG---NNNNGL----MLDPSSLYPAQLN------SFIAGTPF 340

[Close]

BLAST of ClCG02G022900 vs. ExPASy TrEMBL
Match: A0A5A7V0Q8 (Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00770 PE=3 SV=1)

HSP 1 Score: 690.3 bits (1780), Expect = 6.6e-195
Identity = 371/422 (87.91%), Postives = 385/422 (91.23%), Query Frame = 0


Query: 3   VVATTRRLPSDSGAFADWAAPSSSAARAA-PDDLSLGFNAGPSAGPPPGPPVSMWSAAAQ 62
           VVATTRRLPSDSGAFADWAAP+SSAARAA PDDLSLGFNA PSA PPPGPPVSMWSAAAQ
Sbjct: 2   VVATTRRLPSDSGAFADWAAPTSSAARAAPPDDLSLGFNAAPSAAPPPGPPVSMWSAAAQ 61

Query: 63  RSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVG 122
           RSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPATALGVGVG
Sbjct: 62  RSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPATALGVGVG 121

Query: 123 VGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHN 182
           VGVIPLLTAGPC+GVEE+NL GNRSS+RGGGIQ     QQS+QHYLKKT S SLDH    
Sbjct: 122 VGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGSLDH---- 181

Query: 183 ASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 242
            S TNNELIGGGIGGS GLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV
Sbjct: 182 VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHV 241

Query: 243 KSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSLD 302
           KSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNTTPPRSLD
Sbjct: 242 KSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNTTPPRSLD 301

Query: 303 TSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 362
           TSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFKGFLYDQG
Sbjct: 302 TSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG 361

Query: 363 VEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVPGFLAGS 418
           VEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGVPGFL GS
Sbjct: 362 VEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGS 415

[Close]

BLAST of ClCG02G022900 vs. ExPASy TrEMBL
Match: A0A6J1FY67 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448991 PE=3 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 1.1e-173
Identity = 323/373 (86.60%), Postives = 339/373 (90.88%), Query Frame = 0


Query: 55  MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNP 114
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLAVSN 
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 115 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTAS 174
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLG+RS SRGGGIQLWQQN QS+QHYLKKT S
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNHQSTQHYLKKTPS 120

Query: 175 SSLDHHLHNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRS 234
           SSLDHHLHNAS TNN+LIGGGIG   GLASS+SATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNASGTNNDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 235 RGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSN 294
           RGFDCATHVKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 295 TTPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVF 354
           TTPP S+DTSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 355 KGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVP 414
           KGFLYDQGVEAGDGFPNVSEL+L DGGGGSRNNRNGSSS+P VDPSDVYNAAASG GG P
Sbjct: 301 KGFLYDQGVEAGDGFPNVSELNLSDGGGGSRNNRNGSSSAPFVDPSDVYNAAASGNGGAP 360

Query: 415 GFLAGSNYDLHIQ 423
           GFL GSNY   I+
Sbjct: 361 GFLGGSNYGNQIR 373

[Close]

BLAST of ClCG02G022900 vs. ExPASy TrEMBL
Match: A0A6J1JCY6 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC111484595 PE=3 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 1.9e-170
Identity = 321/373 (86.06%), Postives = 337/373 (90.35%), Query Frame = 0


Query: 55  MWS--AAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNP 114
           MWS  AAAQRSLNYGLGSEMGMVGLRDVYVVAPA++FNPNPH HD NL+SD HSLAVSN 
Sbjct: 1   MWSAAAAAQRSLNYGLGSEMGMVGLRDVYVVAPAASFNPNPHHHDPNLISDDHSLAVSNS 60

Query: 115 ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTAS 174
           ATALGVGVGVGVIPLLTAGPCLGVEEDNLLG+RS SRGGGIQLWQQNQQS+QHYLKKT S
Sbjct: 61  ATALGVGVGVGVIPLLTAGPCLGVEEDNLLGSRSGSRGGGIQLWQQNQQSTQHYLKKTPS 120

Query: 175 SSLDHHLHNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRS 234
           SSLDHHLHNAS T N+LIGGGIG   GLASS+SATTTCQDCGNQAKKDCS  RCRTCCRS
Sbjct: 121 SSLDHHLHNASGT-NDLIGGGIGVFGGLASSSSATTTCQDCGNQAKKDCSRGRCRTCCRS 180

Query: 235 RGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGAKKPRLIASQTTSHTSTSN 294
           RGFDCATHVKSTWVPAARRRERQLMA+T TAA GSSGS SG KKPRLIASQTTSHTSTSN
Sbjct: 181 RGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLIASQTTSHTSTSN 240

Query: 295 TTPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVF 354
           TTPP S+DTSS   +AGFKE LP Q++A AVFKCVRVTAVDDG+DEYAYQAVVKIGGHVF
Sbjct: 241 TTPPGSIDTSSSHQDAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVF 300

Query: 355 KGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGVP 414
           KGFLYDQGV+AGDGFPNVSELHL DGGGGSRNNRNG SS+P VDPSDVYN AASG GG P
Sbjct: 301 KGFLYDQGVDAGDGFPNVSELHLSDGGGGSRNNRNG-SSAPFVDPSDVYNVAASGNGGAP 360

Query: 415 GFLAGSNYDLHIQ 423
           GFL GSNY   I+
Sbjct: 361 GFLGGSNYGNQIR 371

[Close]

BLAST of ClCG02G022900 vs. ExPASy TrEMBL
Match: A0A1S3BN66 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 3.7e-169
Identity = 322/371 (86.79%), Postives = 336/371 (90.57%), Query Frame = 0


Query: 55  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPAT 114
           MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPAT
Sbjct: 1   MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPAT 60

Query: 115 ALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSS 174
           ALGVGVGVGVIPLLTAGPC+GVEE+NL GNRSS+RGGGIQ     QQS+QHYLKKT S S
Sbjct: 61  ALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGS 120

Query: 175 LDHHLHNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 234
           LDH     S TNNELIGGGIGGS GLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRG
Sbjct: 121 LDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 180

Query: 235 FDCATHVKSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNT 294
           FDCATHVKSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNT
Sbjct: 181 FDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNT 240

Query: 295 TPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFK 354
           TPPRSLDTSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFK
Sbjct: 241 TPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFK 300

Query: 355 GFLYDQGVEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGV 414
           GFLYDQGVEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGV
Sbjct: 301 GFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGV 360

Query: 415 PGFLAGSNYDL 420
           PGFL GSNY +
Sbjct: 361 PGFLGGSNYGI 363

[Close]

BLAST of ClCG02G022900 vs. ExPASy TrEMBL
Match: A0A1S3BMJ0 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=3 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 6.2e-169
Identity = 322/369 (87.26%), Postives = 335/369 (90.79%), Query Frame = 0


Query: 55  MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPAT 114
           MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPAS+FN NPH HD NL+SDPHSLAVSNPAT
Sbjct: 1   MWSAAAQRSLNYGLGSEMGMVGLRDVYVVAPASSFNQNPHQHDVNLLSDPHSLAVSNPAT 60

Query: 115 ALGVGVGVGVIPLLTAGPCLGVEEDNLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSS 174
           ALGVGVGVGVIPLLTAGPC+GVEE+NL GNRSS+RGGGIQ     QQS+QHYLKKT S S
Sbjct: 61  ALGVGVGVGVIPLLTAGPCVGVEEENLFGNRSSNRGGGIQF----QQSTQHYLKKTPSGS 120

Query: 175 LDHHLHNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 234
           LDH     S TNNELIGGGIGGS GLASS+SATTTCQDCGNQAKKDCSHRRCRTCCRSRG
Sbjct: 121 LDH----VSGTNNELIGGGIGGSGGLASSSSATTTCQDCGNQAKKDCSHRRCRTCCRSRG 180

Query: 235 FDCATHVKSTWVPAARRRERQLMAVTATAAA-GSSGSTSGAKKPRLIASQTTSHTSTSNT 294
           FDCATHVKSTWVPAARRRERQLMAVTATAAA GSS STSGAKKPRLI SQTTSHTSTSNT
Sbjct: 181 FDCATHVKSTWVPAARRRERQLMAVTATAAADGSSASTSGAKKPRLIPSQTTSHTSTSNT 240

Query: 295 TPPRSLDTSS---NAGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFK 354
           TPPRSLDTSS   + G KEALP Q++A+AVFKCVRVTAVDDGDDEYAY A+VKIGGHVFK
Sbjct: 241 TPPRSLDTSSSHQDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFK 300

Query: 355 GFLYDQGVEAGDGFPNVSELHLGD--GGGGSRNNRNGSSSSPLVDPSDVYNAAASGGGGV 414
           GFLYDQGVEAGDGFPNVSELHLGD  GGGG+ NNRNGSSSSPLVDPSDVYN AASG GGV
Sbjct: 301 GFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGV 360

Query: 415 PGFLAGSNY 418
           PGFL GSNY
Sbjct: 361 PGFLGGSNY 361

[Close]

BLAST of ClCG02G022900 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 332.4 bits (851), Expect = 6.7e-91
Identity = 232/439 (52.85%), Postives = 274/439 (62.41%), Query Frame = 0


Query: 4   VATTRR--LP-SDSGAFADWAAPSSSAARAAPDDLSLGFNAGPS------------AGPP 63
           VATTRR  LP SDSGAF DWAA +++ +RA  +DLSLGFNAG S            AG P
Sbjct: 9   VATTRRHNLPTSDSGAFTDWAATTTTPSRAT-EDLSLGFNAGSSVIHGGLGSASVAAGVP 68

Query: 64  PGPPVSMWSAAAQRSLNYGLGS-----EMGMVGLRDVYVVAPASTFNPNPHPHDANLMSD 123
             PP S        S+ YGL S     EMGMVGLRDV++VAPA       H  +A ++S 
Sbjct: 69  SWPPGS--------SVRYGLPSSAAATEMGMVGLRDVFLVAPAY------HHQNAGVISG 128

Query: 124 PHSLAVSNPATALGVGVGVGVIPLLTAG-PCLGVEED--NLLGNRSSSRGGGIQLWQQNQ 183
              +   N   A    +GVGVIPLLTAG P   VE+   N LGN         + WQ N 
Sbjct: 129 SDHM---NSNAAAAAALGVGVIPLLTAGTPQQNVEDSDINFLGNN--------RRWQNNN 188

Query: 184 QSSQHYLKKTASSSLDHHLHNASATNNELIGGGIGGSSGLASSTSATTTCQDCGNQAKKD 243
            + +             +LH  S   N+   G    +SG  S  S T TCQDCGNQAKK+
Sbjct: 189 NNHE-----------TQYLHFKS--TNQTTVGTSSNNSGSGSGASGTATCQDCGNQAKKE 248

Query: 244 CSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGST-SGAKKPRL 303
           C  RRCRTCC+SRGFDC+THVKSTWV AARRRERQ+M   A   AGSS ST SG KKPR+
Sbjct: 249 CKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSLSTSSGTKKPRI 308

Query: 304 IAS------QTTSHTSTSNTTPPRSLDTSSN----AGFKEALPSQVQARAVFKCVRVTAV 363
           + S      Q TSHTSTSN TPP+S +TSS+     G +EA P QV+A AVFKCVRVTAV
Sbjct: 309 VGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAV 368

Query: 364 DDGDDEYAYQAVVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGGGGSRNNRNG-SSS 408
           +DGDDEYAYQAVVKIGGHVFKGFLYDQG+E  +GFP++S+LHL    GGS NN NG S+S
Sbjct: 369 EDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLHL----GGSANNHNGVSAS 403

[Close]

BLAST of ClCG02G022900 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 293.9 bits (751), Expect = 2.7e-79
Identity = 190/351 (54.13%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 72  MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 131
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 132 -PCLGVEED--NLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNNE 191
            P   VE+   N LGN         + WQ N  + +             +LH  S   N+
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS--TNQ 120

Query: 192 LIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 251
              G    +SG  S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 252 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 311
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 312 SSN----AGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 371
           SS+     G +EA P QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 372 VEAGDGFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGG 408
           +E  +GFP++S+LHL    GGS NN NG S+S+P++DP +V      G GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of ClCG02G022900 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 293.9 bits (751), Expect = 2.7e-79
Identity = 190/351 (54.13%), Postives = 226/351 (64.39%), Query Frame = 0


Query: 72  MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 131
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 132 -PCLGVEED--NLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNNE 191
            P   VE+   N LGN         + WQ N  + +             +LH  S   N+
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS--TNQ 120

Query: 192 LIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 251
              G    +SG  S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 252 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 311
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 240

Query: 312 SSN----AGFKEALPSQVQARAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQG 371
           SS+     G +EA P QV+A AVFKCVRVTAV+DGDDEYAYQAVVKIGGHVFKGFLYDQG
Sbjct: 241 SSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQG 300

Query: 372 VEAGDGFPNVSELHLGDGGGGSRNNRNG-SSSSPLVDPSDVYNAAASGGGG 408
           +E  +GFP++S+LHL    GGS NN NG S+S+P++DP +V      G GG
Sbjct: 301 LEPKEGFPSMSDLHL----GGSANNHNGVSASAPILDPPNVVYGGGGGSGG 316

[Close]

BLAST of ClCG02G022900 vs. TAIR 10
Match: AT5G12330.3 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 169.5 bits (428), Expect = 7.6e-42
Identity = 121/243 (49.79%), Postives = 144/243 (59.26%), Query Frame = 0


Query: 72  MGMVGLRDVYVVAPASTFNPNPHPHDANLMSDPHSLAVSNPATALGVGVGVGVIPLLTAG 131
           MGMVGLRDV++VAPA       H  +A ++S    +   N   A    +GVGVIPLLTAG
Sbjct: 1   MGMVGLRDVFLVAPAY------HHQNAGVISGSDHM---NSNAAAAAALGVGVIPLLTAG 60

Query: 132 -PCLGVEED--NLLGNRSSSRGGGIQLWQQNQQSSQHYLKKTASSSLDHHLHNASATNNE 191
            P   VE+   N LGN         + WQ N  + +             +LH  S   N+
Sbjct: 61  TPQQNVEDSDINFLGNN--------RRWQNNNNNHE-----------TQYLHFKS--TNQ 120

Query: 192 LIGGGIGGSSGLASSTSATTTCQDCGNQAKKDCSHRRCRTCCRSRGFDCATHVKSTWVPA 251
              G    +SG  S  S T TCQDCGNQAKK+C  RRCRTCC+SRGFDC+THVKSTWV A
Sbjct: 121 TTVGTSSNNSGSGSGASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSA 180

Query: 252 ARRRERQLMAVTATAAAGSSGST-SGAKKPRLIAS------QTTSHTSTSNTTPPRSLDT 305
           ARRRERQ+M   A   AGSS ST SG KKPR++ S      Q TSHTSTSN TPP+S +T
Sbjct: 181 ARRRERQVMPTGANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFET 212

[Close]

BLAST of ClCG02G022900 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 156.0 bits (393), Expect = 8.6e-38
Identity = 108/256 (42.19%), Postives = 140/256 (54.69%), Query Frame = 0


Query: 159 NQQSSQHYLKKTASSSLDHHLHNASATNNELIGGGIGGSSGLA-SSTSATTTCQDCGNQA 218
           N  SSQ   +      L HH  +    + +L  G     S LA SS S T +C+DCGNQA
Sbjct: 42  NPSSSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSITISCRDCGNQA 101

Query: 219 KKDCSHRRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAVTATAAAGSSGSTSGA--- 278
           KKDC+H RCRTCC+SRGFDC+THV+STW+P ARRRERQ     +T+  G    + GA   
Sbjct: 102 KKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGGG 161

Query: 279 --KKPRLIASQTTSHTSTSNTTPPRSLDTSSNAGFKEALPSQVQARAVFKCVRVTAVDD- 338
               P+     T   TS+S+  P  S         + + P +V + A+F+CV+++ VDD 
Sbjct: 162 GSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMG---EASFPGEVSSDALFRCVKMSGVDDG 221

Query: 339 GDDEYAYQAVVKIGGHVFKGFLYDQGVEA-----GDGFPNVSELHLGDGGGGSRNN---- 396
           GD +YAYQ  V IGGH+FKG LYDQG E+     G G  +      G GGGG   N    
Sbjct: 222 GDGQYAYQTTVNIGGHLFKGILYDQGPESSYMSGGSGGSDHQSSSAGGGGGGHPFNPPVV 281

The following BLAST results are available for this feature:

BLAST of ClCG02G022900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512287.1	7.7e-198	86.12	protein LATERAL ROOT PRIMORDIUM 1-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAG6570417.1	1.0e-197	82.42	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0061772.1	1.4e-194	87.91	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo var. makuwa] >TY...	[more]
XP_038902210.1	2.3e-181	91.55	protein LATERAL ROOT PRIMORDIUM 1-like [Benincasa hispida]	[more]
KAG6605936.1	3.3e-180	84.38	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG02G022900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	3.7e-78	54.13	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	1.2e-36	42.19	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9SD40	4.3e-34	38.43	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	7.4e-34	39.49	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9LQZ5	7.6e-31	37.02	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]

BLAST of ClCG02G022900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0Q8	6.6e-195	87.91	Protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1FY67	1.1e-173	86.60	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1JCY6	1.9e-170	86.06	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114845...	[more]
A0A1S3BN66	3.7e-169	86.79	protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3BMJ0	6.2e-169	87.26	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of ClCG02G022900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.4	6.7e-91	52.85	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.2	2.7e-79	54.13	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	2.7e-79	54.13	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.3	7.6e-42	49.79	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	8.6e-38	42.19	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05142	DUF702	coord: 207..359 e-value: 1.3E-61 score: 207.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..392
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..305
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 72..417
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 209..251 e-value: 7.5E-26 score: 87.8
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 311..358 e-value: 8.2E-29 score: 97.3
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 72..417

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G022900.2	ClCG02G022900.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding