ClCG02G022880 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G022880
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RING-type domain-containing protein
Location	CG_Chr02: 37296969 .. 37300664 (-)
RNA-Seq Expression	ClCG02G022880
Synteny	ClCG02G022880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACTTCAAATACACAACTTTTGATTTTCTCGTCAAGAACTCCTGGATCGCGAGTAGAGAATATTCTCGAGCATCCTTTCTTTTCTTCCGGTTCAGAATAATTCTTCAGCATCTTCTTTCTTTTCAAGTTTTGATTTTTGCTGAACGACTATTTGGGTTCTGTGTAATTTGGAGCGAGAAAGATCGGAGGAGAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGGTTTCTTTCTATCTATTCATTTTCGAAGTTGATCTACTTTCACGTACTTTCTTTCTCCAAGAGAATCAGGGGCGTAAAACTTTGCGTAAGAAATGGTTGTCTTCAATTTGTGTTGATAGTTCTTATTGGAAGTATTGTGTTCTCAAATCTGATTTAGTACTGTTGTCATCTGTTTTTCAAGATTTGCGTTTATTGGGGTTCGTGGGTTAGTCTTGTTTTCTTTCATCGTCAAGATTGCGGACATCGGGAGGCTTATTTTCTGCGATTTAGTCTCGAATTGAATTGATTTTTCTTCTTGGTTGTATGGCTTTGGGGAATCATAAGAAGCAGAATCCATTTTTTATGTTCATCCCTTTGGCAGTGATTGGATTGATGTTGTTTCTCTTGCGAATTTGGTCGGTCGCCTGTGCATGGTTTTCTTTATTCTATAAGGAGGATTTTTATCCCTTTCAGTTATAGTTGCATATCTATGATTCTGTTCAAGTGTCTGTTTTCGAATATTGGATATTCGCGTGTATACTAAGAGGATTTCTAACTTGCTGGATTTGTATGTTCAGTTGGAAATGTAGATCTTTTCTTCTGGTTCAGAATAATTCTTCAGCATCTCCTTTTCAAGTTTTGATTTGTCATTTGTTTTCCAAGATTAGCGTTCCTTTGGGGCTAATTAAAGAAGTCTCAGATCGTTGGTTTAGTCTTGTTTTCTTTCATTGTCAAGATTACGGACATCGGGCCCTGCGATGTAATATCTAGGCAAATTATGGTTTAATCGAATTGAATTAGCTTGTGTGCTTGGTTGTATGGCTATGAGGAATCATAAGAAGCAGAAGGTATTGATTGTGTTGATCCGTTTGCCAGTAATTGGATTGCTGTTGTTTTTCTTTTGCGAATATGGCCGGTCGCCTGTGCATGCTTTTCTTTATTCTATAAGGAAGTTAGAGTTGCATATCTATGATTCTGTTTAAGAGTGATTTGAATATTGGATACGCGTATACATACTTCGAGGATTTCTTACTTGCTGGATTTGTATGTTCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGGTTTGTTCCAATTGATTCATCTTTTATATACTTATTAATATTTTTATAGCATGACTTATTCATATGTATTTTATTTCGTTGTGGCTCTATGGTTGTATTGGAGATGGAGTTTTAAGTTGTTGCGAACGTATTCCCCTGGGAGTCCGCTAAACTTTGTAGGAGAAAATTCACTGTATCCATATTGCCTTTGGTGCAATGTTTCTAATTGTACTTGAGGTTGCTCGGATTTAATTGGAAGAGGTATGCCGTTTTAGATTTATAACCTAAGCATCTTGGAGTTAGGGAGTTGTATGGAATGGAGTCTGATGGTTATAATTTGCTGTGCTTTGACAGATATATCATAAACTAGCAGAAGTCATAGTTAAGTCTTGTGACTCTTGTCTTATTTTGTTGATTGATTATTGAAGTTGAAATGCTTGCTTGGTGGGACTTGGACAGAATTATATTGTTCTCAGTATTCAGTGATTTATTGTGAGCCTATGAAGCATGTAGTATACCTTAGTTTGGATAAGGTGTTCCAGTGTTTGTAATTTACATCCGTTGGACTGGCAACCACTGATTAATTTTATGACATGTTGGACACATTCGTTAAATTGGCACATATCAAACGCTGTGTTGAATATTTGTTGGGAACAAGTACAATAGACACGAATAAAACACATATTGGAACAATTATTGGCATTTGAACTCAAGTGTTCAAGCATATGTTTGACAAGGCTTGGATGTTTGGAAAATGGCTTGTCACCATGCTTGCCGTTCCAGTGTCTATGCTTCTTTTTTTCTATAAGCTAGTTACCCTTTCAGTTCCTCCAAATTATGTGTTCACATAGTTGATGCATTTCATGTCTGTTGACAAGTTTGATTTTATGTTCTTAGACTTGCGTCGAGGAACATTTCTCCTACTGCTGTTCTAGGAAATAGTTTATGTAGTTTTCACTTTCAGCTGGGGAACTTATTAGTAATATTTAGTCAGAACAAAAATCGAAGTGGCCAATGGTTAATGGGATTACCTATTGTTTTTCCAGCCACTGAAGTATTGGAAATATTTTCCTTGTTTGTTTGAGGAACGGGAGTGACCTTTTATAGTTGTACGTATGGCCATTATTTTCTTTTATTTATTCTTTCTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTAATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCTTTTATAGTTGTACGTATGGCCATTATTTTCTTTTATTTATTCTTTCTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTAATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCTTTTATAGTTGTACGTATGGCCATTATTTTCTTTTATTTATTCTTTCTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGGTATGTCCATTCATCATTCTATGGAGATCTTTTATAGTTTATAATTTGAATACTGGTATCTTTTTAAATTACTGTTCTTATTATATATTGCCTGTGCATTGTTAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATCGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATGCTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGTCCGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCCTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAATGATTTTATGTTTAAAGCTCCTGTATAGAATAAGCTCTGCTCTTTTCCCTTTGTACAGTTCTAAGATTCAACTTACTTTGTATAAACATTGAATCTCAAATTCAATCATAAAAGAATTGTTAGCAGCTAGCATTTAGTTTCATGTAATATAACTTTTCAAAACTCTAGACTCAAACTTAGCTCCACTATATCCATTGAACTAACTTAACTTGGC

mRNA sequence

GACTTCAAATACACAACTTTTGATTTTCTCGTCAAGAACTCCTGGATCGCGAGTAGAGAATATTCTCGAGCATCCTTTCTTTTCTTCCGGTTCAGAATAATTCTTCAGCATCTTCTTTCTTTTCAAGTTTTGATTTTTGCTGAACGACTATTTGGGTTCTGTGTAATTTGGAGCGAGAAAGATCGGAGGAGAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATCGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATGCTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGTCCGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCCTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAATGATTTTATGTTTAAAGCTCCTGTATAGAATAAGCTCTGCTCTTTTCCCTTTGTACAGTTCTAAGATTCAACTTACTTTGTATAAACATTGAATCTCAAATTCAATCATAAAAGAATTGTTAGCAGCTAGCATTTAGTTTCATGTAATATAACTTTTCAAAACTCTAGACTCAAACTTAGCTCCACTATATCCATTGAACTAACTTAACTTGGC

Coding sequence (CDS)

GACTTCAAATACACAACTTTTGATTTTCTCGTCAAGAACTCCTGGATCGCGAGTAGAGAATATTCTCGAGCATCCTTTCTTTTCTTCCGGTTCAGAATAATTCTTCAGCATCTTCTTTCTTTTCAAGTTTTGATTTTTGCTGAACGACTATTTGGGTTCTGTGTAATTTGGAGCGAGAAAGATCGGAGGAGAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATCGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATGCTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGTCCGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCCTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAATGA

Protein sequence

DFKYTTFDFLVKNSWIASREYSRASFLFFRFRIILQHLLSFQVLIFAERLFGFCVIWSEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSLRIGNRRWGDNGYVRAGRQEARPVLRSEFAGPSSSREPVTKHASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK

Homology

[Close]

BLAST of ClCG02G022880 vs. NCBI nr
Match: XP_004140197.1 (uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus] >KGN48101.1 hypothetical protein Csa_003121 [Cucumis sativus])

HSP 1 Score: 447.2 bits (1149), Expect = 1.2e-121
Identity = 229/259 (88.42%), Postives = 237/259 (91.51%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR        +SSGIS QSAE+SDAVQE V C+QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----AMATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKP I+EEREETYDDPEDDQYY   PYEDD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYY---PYEDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEFAGPSSSREPVTKHA-SKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF GPSSSREPVTK A SKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLARFGRK 316
           ADKAAAAKHQEHLARFGRK
Sbjct: 266 ADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of ClCG02G022880 vs. NCBI nr
Match: XP_011657615.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus])

HSP 1 Score: 443.7 bits (1140), Expect = 1.3e-120
Identity = 224/245 (91.43%), Postives = 231/245 (94.29%), Query Frame = 0


Query: 72  SSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACAICLNKIALQETALV 131
           +SSGIS QSAE+SDAVQE V C+QLEMGKKVEIQGTG+GSHDGACAICLNKIALQETALV
Sbjct: 3   TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 62

Query: 132 RGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 191
           RGCEHAYCATCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 63  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 122

Query: 192 WYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSLRIGNRRWGDNGYVR 251
           WYKP I+EEREETYDDPEDDQYY   PYEDD+EE EDAYLG SPSLRIGNRRWG NGYVR
Sbjct: 123 WYKPPIIEEREETYDDPEDDQYY---PYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVR 182

Query: 252 AGRQEARPVLRSEFAGPSSSREPVTKHA-SKDKTGRRAKRALKREAADKAAAAKHQEHLA 311
           AGRQEARPVLR EF GPSSSREPVTK A SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 183 AGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLA 242

Query: 312 RFGRK 316
           RFGRK
Sbjct: 243 RFGRK 244

[Close]

BLAST of ClCG02G022880 vs. NCBI nr
Match: TYJ96112.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 443.7 bits (1140), Expect = 1.3e-120
Identity = 228/259 (88.03%), Postives = 236/259 (91.12%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR     +  +SSGIS QSAE+SDAVQE V C QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----VMTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKPLI EEREETYD+PEDDQYY    YEDD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYY---HYEDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEF-AGPSSSREPVTKHASKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF  GPSSSR+PVTK ASKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLARFGRK 316
           ADKAAAAKHQEHLARFGRK
Sbjct: 266 ADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of ClCG02G022880 vs. NCBI nr
Match: XP_016900768.1 (PREDICTED: uncharacterized protein LOC103491476 [Cucumis melo])

HSP 1 Score: 434.1 bits (1115), Expect = 1.0e-117
Identity = 223/254 (87.80%), Postives = 231/254 (90.94%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR     +  +SSGIS QSAE+SDAVQE V C QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----VMTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKPLI EEREETYD+PEDDQYY    YEDD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYY---HYEDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEF-AGPSSSREPVTKHASKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF  GPSSSR+PVTK ASKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLA 311
           ADKAAAAKHQEHLA
Sbjct: 266 ADKAAAAKHQEHLA 271

[Close]

BLAST of ClCG02G022880 vs. NCBI nr
Match: KAA0061770.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 431.4 bits (1108), Expect = 6.6e-117
Identity = 222/254 (87.40%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR     +  +SSGIS QSAE+SDAVQE V C QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----VMTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKPLI EEREETYDDPEDDQY     Y DD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPLIFEEREETYDDPEDDQY-----YHDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEF-AGPSSSREPVTKHASKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF  GPSSSR+PVTK ASKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLA 311
           ADKAAAAKHQEHLA
Sbjct: 266 ADKAAAAKHQEHLA 269

[Close]

BLAST of ClCG02G022880 vs. ExPASy Swiss-Prot
Match: Q99590 (Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 29/92 (31.52%), Postives = 43/92 (46.74%), Query Frame = 0


Query: 96  LEMGKK--VEIQGTGNG----------SHDGACAICLNKIALQETALVRGCEHAYCATCI 155
           L MG K   +++G  NG          S    C ICLN +  +E      C H +C TCI
Sbjct: 9   LNMGDKKYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCI 68

Query: 156 LRWASYTQKPTCPQCKHPFEFLIVHRSLDGSI 176
           L+WA      +CP  + PF+ +    +L+G +
Sbjct: 69  LKWAE--TLASCPIDRKPFQAVFKFSALEGYV 98

[Close]

BLAST of ClCG02G022880 vs. ExPASy TrEMBL
Match: A0A0A0KK15 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.7e-122
Identity = 229/259 (88.42%), Postives = 237/259 (91.51%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR        +SSGIS QSAE+SDAVQE V C+QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----AMATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKP I+EEREETYDDPEDDQYY   PYEDD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYY---PYEDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEFAGPSSSREPVTKHA-SKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF GPSSSREPVTK A SKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLARFGRK 316
           ADKAAAAKHQEHLARFGRK
Sbjct: 266 ADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of ClCG02G022880 vs. ExPASy TrEMBL
Match: A0A5D3B8D7 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00750 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 6.3e-121
Identity = 228/259 (88.03%), Postives = 236/259 (91.12%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR     +  +SSGIS QSAE+SDAVQE V C QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----VMTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKPLI EEREETYD+PEDDQYY    YEDD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYY---HYEDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEF-AGPSSSREPVTKHASKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF  GPSSSR+PVTK ASKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLARFGRK 316
           ADKAAAAKHQEHLARFGRK
Sbjct: 266 ADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of ClCG02G022880 vs. ExPASy TrEMBL
Match: A0A1S4DXR5 (uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 5.0e-118
Identity = 223/254 (87.80%), Postives = 231/254 (90.94%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR     +  +SSGIS QSAE+SDAVQE V C QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----VMTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKPLI EEREETYD+PEDDQYY    YEDD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYY---HYEDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEF-AGPSSSREPVTKHASKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF  GPSSSR+PVTK ASKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLA 311
           ADKAAAAKHQEHLA
Sbjct: 266 ADKAAAAKHQEHLA 271

[Close]

BLAST of ClCG02G022880 vs. ExPASy TrEMBL
Match: A0A5A7V3C1 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001490 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 3.2e-117
Identity = 222/254 (87.40%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 58  SEKDRRRNPRVLAMSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACA 117
           S+KDRR     +  +SSGIS QSAE+SDAVQE V C QLEMGKKVEIQGTG+GSHDGACA
Sbjct: 26  SDKDRR-----VMTTSSGISIQSAEISDAVQEQVTCHQLEMGKKVEIQGTGHGSHDGACA 85

Query: 118 ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 177
           ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD
Sbjct: 86  ICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHD 145

Query: 178 YMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSL 237
           YMFEESVCLLLRASWYKPLI EEREETYDDPEDDQY     Y DD+EE EDAYLG SPSL
Sbjct: 146 YMFEESVCLLLRASWYKPLIFEEREETYDDPEDDQY-----YHDDDEELEDAYLGESPSL 205

Query: 238 RIGNRRWGDNGYVRAGRQEARPVLRSEF-AGPSSSREPVTKHASKDKTGRRAKRALKREA 297
           RIGNRRWG NGYVRAGRQEARPVLR EF  GPSSSR+PVTK ASKDKTGRRAKRALKREA
Sbjct: 206 RIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQASKDKTGRRAKRALKREA 265

Query: 298 ADKAAAAKHQEHLA 311
           ADKAAAAKHQEHLA
Sbjct: 266 ADKAAAAKHQEHLA 269

[Close]

BLAST of ClCG02G022880 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 2.6e-114
Identity = 209/243 (86.01%), Postives = 225/243 (92.59%), Query Frame = 0


Query: 71  MSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACAICLNKIALQETAL 130
           M+SSGIS +SAELSDAVQ+L +C+Q+EM KK+EIQGTG+GSHDGACAICLNKI+L ETAL
Sbjct: 1   MTSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETAL 60

Query: 131 VRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 190
           VRGCEHAYC TCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA
Sbjct: 61  VRGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 120

Query: 191 SWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSLRIGNRRWGDNGYV 250
           SWY+PLIV++REETYDDPE+     Y PYED +EE E+AYLG SPSLRIGNRRWGDNGYV
Sbjct: 121 SWYEPLIVKDREETYDDPEE-----YYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYV 180

Query: 251 RAGRQEARPVLRSEFAGPSSSREPVTKHASKDKTGRRAKRALKREAADKAAAAKHQEHLA 310
           RAGRQEARPVLR EF+G SSSREP TK ASKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 181 RAGRQEARPVLRPEFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQEHLA 238

Query: 311 RFG 314
           RFG
Sbjct: 241 RFG 238

[Close]

BLAST of ClCG02G022880 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein )

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-67
Identity = 143/257 (55.64%), Postives = 176/257 (68.48%), Query Frame = 0


Query: 71  MSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACAICLNKIALQETAL 130
           MSS        ++ D +Q+L +  Q +   + EI     G+H G CAICL++I LQETA+
Sbjct: 1   MSSVTEIVSEQQVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAM 60

Query: 131 VRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRA 190
           V+GCEH YC TCILRWAS  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRA
Sbjct: 61  VKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRA 120

Query: 191 SWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVSPSLRIGNRRWGDNGYV 250
           SW+ PL V E+        DD   PYD YED++++ ++ YL  S SLRIGNRRWG NG+V
Sbjct: 121 SWFVPLDVVEQASYSHGYHDDFDIPYD-YEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFV 180

Query: 251 RAGRQEARPVLR-------SEFAGPSSSREPVTKHA-SKDKTGRRAKRALKREAADKA-- 310
           R+GRQEARPV R       S  +  SSS EP  K   + + TGRRAKRA+KREAA+KA  
Sbjct: 181 RSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAE 240

Query: 311 --AAAKHQEHLARFGRK 316
             AAAKH+ HL R GRK
Sbjct: 241 VTAAAKHEAHLVRLGRK 255

[Close]

BLAST of ClCG02G022880 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein )

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-65
Identity = 139/240 (57.92%), Postives = 168/240 (70.00%), Query Frame = 0


Query: 90  LVICEQLEMGKKV--EIQGTGNGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWA 149
           L +   +   KK+  EI     G+H G CAICL++I LQETA+V+GCEH YC TCILRWA
Sbjct: 3   LALLHNIRDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVTCILRWA 62

Query: 150 SYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIVEEREETYDD 209
           S  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRASW+ PL V E+      
Sbjct: 63  SCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVEQASYSHG 122

Query: 210 PEDDQYYPYDPYEDDNEEFEDAYLGVSPSLRIGNRRWGDNGYVRAGRQEARPVLR----- 269
             DD   PYD YED++++ ++ YL  S SLRIGNRRWG NG+VR+GRQEARPV R     
Sbjct: 123 YHDDFDIPYD-YEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFVRSGRQEARPVQRYSGSG 182

Query: 270 --SEFAGPSSSREPVTKHA-SKDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK 316
             S  +  SSS EP  K   + + TGRRAKRA+KREAA+KA    AAAKH+ HL R GRK
Sbjct: 183 SSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLVRLGRK 240

[Close]

BLAST of ClCG02G022880 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein )

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-63
Identity = 129/219 (58.90%), Postives = 159/219 (72.60%), Query Frame = 0


Query: 110 GSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHR 169
           G+H G CAICL+ I LQETA+V+GCEHAYC TCILRWASY +KPTCPQCK PF+FL VHR
Sbjct: 37  GNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHR 96

Query: 170 SLDGSIHDYMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYP--YDPYEDDNEEFE 229
           +LDGS+ D+MFEESVCLLLRASW++PL   ER    D+   D   P  Y+  ++D+++ +
Sbjct: 97  ALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDNDNFNYDFDIPPEYEEEDEDDDDLD 156

Query: 230 DAYLGVSPSLRIGNRRWGDNGYVRAGRQEARPVLRSEFAGPSSSREPVTKHASKDK---- 289
           + Y+  S SLR+GNRRWGDNG+VRAGRQEARPV      G +S  EP +  + + K    
Sbjct: 157 EFYMQGS-SLRLGNRRWGDNGFVRAGRQEARPVQHKNRGGQASGSEPASSSSCEPKEKTS 216

Query: 290 ---TGRRAKRALKREAADKA----AAAKHQEHLARFGRK 316
              TGRRAKRA+KREAA+KA    AAAKH+  L R GRK
Sbjct: 217 SAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRLGRK 254

The following BLAST results are available for this feature:

BLAST of ClCG02G022880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140197.1	1.2e-121	88.42	uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus] >KGN48101.1 hy...	[more]
XP_011657615.1	1.3e-120	91.43	E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]	[more]
TYJ96112.1	1.3e-120	88.03	E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016900768.1	1.0e-117	87.80	PREDICTED: uncharacterized protein LOC103491476 [Cucumis melo]	[more]
KAA0061770.1	6.6e-117	87.40	E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG02G022880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99590	1.1e-05	31.52	Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2	[more]

BLAST of ClCG02G022880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK15	5.7e-122	88.42	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 P...	[more]
A0A5D3B8D7	6.3e-121	88.03	E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S4DXR5	5.0e-118	87.80	uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=...	[more]
A0A5A7V3C1	3.2e-117	87.40	E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1FXD4	2.6e-114	86.01	uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]

BLAST of ClCG02G022880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19430.1	3.0e-67	55.64	RING/U-box superfamily protein	[more]
AT5G19430.2	1.3e-65	57.92	RING/U-box superfamily protein	[more]
AT5G12310.1	1.2e-63	58.90	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 116..158 e-value: 9.6E-6 score: 35.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 115..159 e-value: 2.0E-8 score: 34.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 116..159 score: 12.430266
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 97..181 e-value: 6.0E-12 score: 46.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..315
None	No IPR available	PANTHER	PTHR47361:SF4	RING/U-BOX SUPERFAMILY PROTEIN	coord: 77..315
None	No IPR available	PANTHER	PTHR47361	RING/U-BOX SUPERFAMILY PROTEIN	coord: 77..315
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 115..166
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 134..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G022880.1	ClCG02G022880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding