ClCG02G021000 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G021000
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr02: 35508839 .. 35509498 (-)
RNA-Seq Expression	ClCG02G021000
Synteny	ClCG02G021000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGAATTAATCTGGCACCAAAGGCCCCTCCAAAAGCCCCAGAAAACCAAACCCATGCTTTAGATTTTTTATTCTCTCTCTTTTCTTCTTCTATTTTTCTCCATCAAACAACTGAAAGAAACCGCAATTCCTCTGTTTCTTCTTCTTCCTCCTCCTTGTCAGAGAAATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTGTTTCAGCCTTCACTTTCTCTAATCATTCCCTCTCTAATGAGTATGTTTTCTTAACCCTTCCTATCTTTTCTCTTTCTCTGAATACATAAACTGTATCATTATGTTGCTCTGTTTTTTTGGGGGTAATAGAATGGCAGATCATGATCGAAGGAGGGAAGCCATGAGAATGAAAATGCAAAGATCAAGAAACATGGAAGAATACAGGTTGTTGGAAGTTATTAGAGAGGGAGATCTTGAGGGTTTCGTCGATGAATTCTGTGAAACCAACTTAATTTGTGTTGCAAAAGCTGCTTAGATTATAAAAAACAGAGTCTATGATCTGGGTTTTGTTGGGTTTGGATCTGTCTTTTCATATATTTTGTCAATTCTGATCTAGGTTCGTTTTATGTATTGTTCTTGTTCGATCTGAAATGGGATTATTCGGCTCTAAAATGGTAAAAAATTTGACTTGTTA

mRNA sequence

GGAGAATTAATCTGGCACCAAAGGCCCCTCCAAAAGCCCCAGAAAACCAAACCCATGCTTTAGATTTTTTATTCTCTCTCTTTTCTTCTTCTATTTTTCTCCATCAAACAACTGAAAGAAACCGCAATTCCTCTGTTTCTTCTTCTTCCTCCTCCTTGTCAGAGAAATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTGTTTCAGCCTTCACTTTCTCTAATCATTCCCTCTCTAATGAAATGGCAGATCATGATCGAAGGAGGGAAGCCATGAGAATGAAAATGCAAAGATCAAGAAACATGGAAGAATACAGGTTGTTGGAAGTTATTAGAGAGGGAGATCTTGAGGGTTTCGTCGATGAATTCTGTGAAACCAACTTAATTTGTGTTGCAAAAGCTGCTTAGATTATAAAAAACAGAGTCTATGATCTGGGTTTTGTTGGGTTTGGATCTGTCTTTTCATATATTTTGTCAATTCTGATCTAGGTTCGTTTTATGTATTGTTCTTGTTCGATCTGAAATGGGATTATTCGGCTCTAAAATGGTAAAAAATTTGACTTGTTA

Coding sequence (CDS)

ATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTGTTTCAGCCTTCACTTTCTCTAATCATTCCCTCTCTAATGAAATGGCAGATCATGATCGAAGGAGGGAAGCCATGAGAATGAAAATGCAAAGATCAAGAAACATGGAAGAATACAGGTTGTTGGAAGTTATTAGAGAGGGAGATCTTGAGGGTTTCGTCGATGAATTCTGTGAAACCAACTTAATTTGTGTTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREGDLEGFVDEFCETNLICVAKAA

Homology

[Close]

BLAST of ClCG02G021000 vs. NCBI nr
Match: KAA0035320.1 (hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK14318.1 hypothetical protein E5676_scaffold84G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.3e-20
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREG 60
          MQSKIGSQGLPLC+SAFT SNHSLS ++ADHDRRREAM+ + QRS NM +YR LE IREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNM-KYRYLEAIREG 60

Query: 61 DLEGFVDEFCETNLICVAKAA 82
          DLE FV+E     +IC AKAA
Sbjct: 61 DLEDFVNE--TDFMICAAKAA 78

[Close]

BLAST of ClCG02G021000 vs. NCBI nr
Match: KGN47309.1 (hypothetical protein Csa_022984 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 9.6e-20
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREG 60
          MQSKIGSQGLPLC+SAFT SNHSLS ++ADHDRRREAM+ + +RS NM ++RLLE IREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNM-KHRLLEAIREG 60

Query: 61 DLEGFVDEFCETNLICVAKAA 82
          DLE FV+E     +IC AKAA
Sbjct: 61 DLEDFVNE--NDLMICAAKAA 78

[Close]

BLAST of ClCG02G021000 vs. NCBI nr
Match: XP_023006923.1 (uncharacterized protein LOC111499567 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREG 60
          M SK+ S GLPLC+S F+ S+ SLS EM DHDRRREAMR +   S +         I + 
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 DLEGFVDEFCE-TNLICVAKAA 82
            +G + + CE T L   AKAA
Sbjct: 61 IGDGDLHDLCEKTKLTSAAKAA 82

[Close]

BLAST of ClCG02G021000 vs. NCBI nr
Match: KAG6605527.1 (hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035464.1 hypothetical protein SDJN02_02260 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREG 60
          M SK+ S GLPLC+S F+ S+  L+ EM DHDRRREAMR +   S +         I + 
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRPLTTEMEDHDRRREAMRRRRSSSADTGGIGFTRYIIQA 60

Query: 61 DLEGFVDEFCE-TNLICVAKAA 82
            +G + + CE T L   AKAA
Sbjct: 61 IGDGDLHDLCEKTKLTSAAKAA 82

[Close]

BLAST of ClCG02G021000 vs. NCBI nr
Match: PQM33250.1 (uncharacterized protein Pyn_24942 [Prunus yedoensis var. nudiflora] >PQM34626.1 uncharacterized protein Pyn_10266 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 1  MQSKI---GSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSR-----NME--- 60
          MQS +   G+ GLPLCVS  T  + + S EMADHDRRREAM+ +  ++R     N E   
Sbjct: 1  MQSMLNLHGTFGLPLCVSGITHHHLTFSEEMADHDRRREAMKRQRSQARAELHANQELGF 60

Query: 61 ---EYRLLEVIREG----DLEGFVDEFCETNLICVAKAA 82
               R+ E IREG    DL   + + C   L C AKAA
Sbjct: 61 ERSSGRVGEQIREGGVDEDLASLLHDLCCCYLACTAKAA 99

[Close]

BLAST of ClCG02G021000 vs. ExPASy TrEMBL
Match: A0A5D3CSY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00460 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREG 60
          MQSKIGSQGLPLC+SAFT SNHSLS ++ADHDRRREAM+ + QRS NM +YR LE IREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNM-KYRYLEAIREG 60

Query: 61 DLEGFVDEFCETNLICVAKAA 82
          DLE FV+E     +IC AKAA
Sbjct: 61 DLEDFVNE--TDFMICAAKAA 78

[Close]

BLAST of ClCG02G021000 vs. ExPASy TrEMBL
Match: A0A0A0KEP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-20
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREG 60
          MQSKIGSQGLPLC+SAFT SNHSLS ++ADHDRRREAM+ + +RS NM ++RLLE IREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNM-KHRLLEAIREG 60

Query: 61 DLEGFVDEFCETNLICVAKAA 82
          DLE FV+E     +IC AKAA
Sbjct: 61 DLEDFVNE--NDLMICAAKAA 78

[Close]

BLAST of ClCG02G021000 vs. ExPASy TrEMBL
Match: A0A6J1L6A3 (uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-07
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEYRLLEVIREG 60
          M SK+ S GLPLC+S F+ S+ SLS EM DHDRRREAMR +   S +         I + 
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 DLEGFVDEFCE-TNLICVAKAA 82
            +G + + CE T L   AKAA
Sbjct: 61 IGDGDLHDLCEKTKLTSAAKAA 82

[Close]

BLAST of ClCG02G021000 vs. ExPASy TrEMBL
Match: A0A314UD00 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10266 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 1  MQSKI---GSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSR-----NME--- 60
          MQS +   G+ GLPLCVS  T  + + S EMADHDRRREAM+ +  ++R     N E   
Sbjct: 1  MQSMLNLHGTFGLPLCVSGITHHHLTFSEEMADHDRRREAMKRQRSQARAELHANQELGF 60

Query: 61 ---EYRLLEVIREG----DLEGFVDEFCETNLICVAKAA 82
               R+ E IREG    DL   + + C   L C AKAA
Sbjct: 61 ERSSGRVGEQIREGGVDEDLASLLHDLCCCYLACTAKAA 99

[Close]

BLAST of ClCG02G021000 vs. ExPASy TrEMBL
Match: A0A2P6QHM8 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0060411 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 44/98 (44.90%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 1  MQSKI---GSQGLPLCVSAFTFSNHSLSNEMADHDRRREAMRMKMQRSRNMEEY------ 60
          MQS +   G+ GLPLCVS  T     L++EMADHDRRREA  MK QRSR  EE       
Sbjct: 1  MQSMLNLHGTFGLPLCVSGITHHPPHLTHEMADHDRRREA--MKKQRSRAREELNANQEL 60

Query: 61 -------RLLEVIREGDLEGFVDEFCETNLI-CVAKAA 82
                 R+ E I +GDL   + +     L  C+AKAA
Sbjct: 61 GIDRIRGRVAEEIMDGDLAALLHDLSLCYLANCIAKAA 96

The following BLAST results are available for this feature:

BLAST of ClCG02G021000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035320.1	3.3e-20	71.60	hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK143...	[more]
KGN47309.1	9.6e-20	70.37	hypothetical protein Csa_022984 [Cucumis sativus]	[more]
XP_023006923.1	1.6e-06	46.34	uncharacterized protein LOC111499567 [Cucurbita maxima]	[more]
KAG6605527.1	1.4e-05	43.90	hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PQM33250.1	3.9e-05	43.43	uncharacterized protein Pyn_24942 [Prunus yedoensis var. nudiflora] >PQM34626.1 ...	[more]

BLAST of ClCG02G021000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G021000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSY7	1.6e-20	71.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KEP9	4.7e-20	70.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1	[more]
A0A6J1L6A3	7.7e-07	46.34	uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567...	[more]
A0A314UD00	1.9e-05	43.43	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_102...	[more]
A0A2P6QHM8	2.5e-05	44.90	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0060411 PE=4...	[more]

BLAST of ClCG02G021000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G021000.1	ClCG02G021000.1	mRNA