ClCG02G018380 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G018380
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protodermal factor 1-like
Location	CG_Chr02: 33013258 .. 33014281 (-)
RNA-Seq Expression	ClCG02G018380
Synteny	ClCG02G018380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCTTTGCTCCCAAGCAGAAGAAAACATGAGAAGCAAACAAACTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGTTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGCTGACCAGAAAAGCTATTACTCTCCACCAGACCCACATGCTGGAACTCCACCAACAGGTTAACACATTCACAATGAATCTCACACATTTAGTATCAGCGTAGTAGTAATAGTAGTGACTAGTAGGCTTACAACATTCTACATCTTTTGCATTGCAGGTTCACATAGCAGCCCTATCCCACCATCACATGGTTATGGAGGAACACCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAAGCCTCCATCTGGTGGTGGTGGATACTACAACCCTCCATCTTCAGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAAGCACTCCAAGCACTCCCAGCATTCCTAGCACACCAAGCACACCAAGCATTCCCACTACTCCATTTACCTGCAAGTAAGTCACAGACTTATAGTAACTGTTTTCCATGGAGAAGAGATCATCATCATCTTGGTTTCTAAAAGTGTGTTTGTTTGCAGTTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGGAATGCTTTTGGAGCAACCAATGTCCCAGGGTTCGGAACAAATCTCAACTTGCTCCAAGCACTTGCAAACACAAGGACTGATGGGTTTGGAGCCCTTTTAAGAGAAGGCACTGCTTCCTACCTTAACTCTCTTGCTAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGCTTCGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACACCTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGATCCTCCCCTTTGCCTTGCCATTTATCACCTTAATAACTAATGAGTGTGGCTTAGCAGTTAGTAGTGAGACAATGAGACCAAT

mRNA sequence

ATCCCTTTGCTCCCAAGCAGAAGAAAACATGAGAAGCAAACAAACTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGTTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGCTGACCAGAAAAGCTATTACTCTCCACCAGACCCACATGCTGGAACTCCACCAACAGGTTCACATAGCAGCCCTATCCCACCATCACATGGTTATGGAGGAACACCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAAGCCTCCATCTGGTGGTGGTGGATACTACAACCCTCCATCTTCAGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAAGCACTCCAAGCACTCCCAGCATTCCTAGCACACCAAGCACACCAAGCATTCCCACTACTCCATTTACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGGAATGCTTTTGGAGCAACCAATGTCCCAGGGTTCGGAACAAATCTCAACTTGCTCCAAGCACTTGCAAACACAAGGACTGATGGGTTTGGAGCCCTTTTAAGAGAAGGCACTGCTTCCTACCTTAACTCTCTTGCTAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGCTTCGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACACCTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGATCCTCCCCTTTGCCTTGCCATTTATCACCTTAATAACTAATGAGTGTGGCTTAGCAGTTAGTAGTGAGACAATGAGACCAAT

Coding sequence (CDS)

ATGAGAAGCAAACAAACTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGTTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGCTGACCAGAAAAGCTATTACTCTCCACCAGACCCACATGCTGGAACTCCACCAACAGGTTCACATAGCAGCCCTATCCCACCATCACATGGTTATGGAGGAACACCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAAGCCTCCATCTGGTGGTGGTGGATACTACAACCCTCCATCTTCAGGTGGCGGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAAGCACTCCAAGCACTCCCAGCATTCCTAGCACACCAAGCACACCAAGCATTCCCACTACTCCATTTACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGGAATGCTTTTGGAGCAACCAATGTCCCAGGGTTCGGAACAAATCTCAACTTGCTCCAAGCACTTGCAAACACAAGGACTGATGGGTTTGGAGCCCTTTTAAGAGAAGGCACTGCTTCCTACCTTAACTCTCTTGCTAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGCTTCGTCTCGGCACTCAGCTCCAACAGAGCAGCAGCTGATCAGGCCAACACCTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGA

Protein sequence

MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPSHGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPSTPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIKPRA

Homology

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BLAST of ClCG02G018380 vs. NCBI nr
Match: XP_038900371.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 450.7 bits (1158), Expect = 8.2e-123
Identity = 233/244 (95.49%), Postives = 239/244 (97.95%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPP-DPHAGTPPTGSHSSPIPP 60
           MR+KQ S LLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPP DPH+GTPPTGSHSSPIPP
Sbjct: 1   MRTKQASVLLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPSDPHSGTPPTGSHSSPIPP 60

Query: 61  SHGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPS 120
           SHGYGG+PPHYSTPTPSTPSKPPS GGGYYNPPSSGGGSPPTTPVDPGTPSTPSTP +PS
Sbjct: 61  SHGYGGSPPHYSTPTPSTPSKPPSSGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPGVPS 120

Query: 121 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTR 180
           TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR
Sbjct: 121 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 180

Query: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKI 240
           TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSN+AAADQANTFKLANEGKI
Sbjct: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANTFKLANEGKI 240

Query: 241 KPRA 244
           KPRA
Sbjct: 241 KPRA 244

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BLAST of ClCG02G018380 vs. NCBI nr
Match: XP_004143175.1 (protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_020699 [Cucumis sativus])

HSP 1 Score: 419.9 bits (1078), Expect = 1.5e-113
Identity = 218/243 (89.71%), Postives = 233/243 (95.88%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPV STSIADQKSYYSPPDPH+G+PP+GSHSSP+PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HG GGT PHYSTPTPSTPS PPSGGGGYYNPPSS GGSPP+TPVDPGTPSTPSTPS+PST
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           P+TP+IPT PFTC YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA +QANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIK 240

Query: 241 PRA 244
           PRA
Sbjct: 241 PRA 241

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BLAST of ClCG02G018380 vs. NCBI nr
Match: XP_008456355.1 (PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal factor 1-like [Cucumis melo var. makuwa] >TYK27542.1 protodermal factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 415.6 bits (1067), Expect = 2.9e-112
Identity = 219/243 (90.12%), Postives = 230/243 (94.65%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SPIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPGTPSTPSTPS+PST
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           PSTP+IPTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

Query: 241 PRA 244
           PRA
Sbjct: 241 PRA 237

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BLAST of ClCG02G018380 vs. NCBI nr
Match: XP_022947015.1 (protodermal factor 1-like [Cucurbita moschata])

HSP 1 Score: 411.8 bits (1057), Expect = 4.2e-111
Identity = 218/249 (87.55%), Postives = 227/249 (91.16%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HGYGGTPPHYSTPTPSTP+K PSGG GYYNPPS  GGS PTTPVDPGTPSTPSTPS PST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPS---------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNL 180
           PSTPS          PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTF 240
           LQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQAN F
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

[Close]

BLAST of ClCG02G018380 vs. NCBI nr
Match: XP_022970795.1 (protodermal factor 1-like [Cucurbita maxima])

HSP 1 Score: 410.2 bits (1053), Expect = 1.2e-110
Identity = 219/252 (86.90%), Postives = 227/252 (90.08%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HGYGGTPPHYSTPTPSTPSK PSG  GYYNPPSS GGS PTTPVDPGTPSTPSTPS PST
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSS-GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPS------------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTN 180
           PSTPS             PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTN
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTN 180

Query: 181 LNLLQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQA 240
           LNLLQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQA
Sbjct: 181 LNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQA 240

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BLAST of ClCG02G018380 vs. ExPASy Swiss-Prot
Match: Q9S728 (Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 9.0e-48
Identity = 139/303 (45.87%), Postives = 171/303 (56.44%), Query Frame = 0


Query: 7   SALLFTLLAGLLSQSLLIPVFSTSIADQKSYY-SPPDPHAGTPPT--------------- 66
           S  ++ L A LLSQ L   V S    D K+YY SPP    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSSPIPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S P PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSKPPSGGGGYYNPPSSGGG---SPPTTPVDPGTP---STPSTPSI-PSTPSTPSIPT 186
            TPS PPS  GGYY+ P        +PP+  VDPGTP    +P TP I P TP TP IP 
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIP- 185

Query: 187 TPF-----TCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALANTR 243
            PF     TC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQAL+NTR
Sbjct: 186 APFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTR 245

[Close]

BLAST of ClCG02G018380 vs. ExPASy TrEMBL
Match: A0A0A0KF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 7.5e-114
Identity = 218/243 (89.71%), Postives = 233/243 (95.88%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPV STSIADQKSYYSPPDPH+G+PP+GSHSSP+PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HG GGT PHYSTPTPSTPS PPSGGGGYYNPPSS GGSPP+TPVDPGTPSTPSTPS+PST
Sbjct: 61  HGSGGT-PHYSTPTPSTPSNPPSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           P+TP+IPT PFTC YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA +QANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIK 240

Query: 241 PRA 244
           PRA
Sbjct: 241 PRA 241

[Close]

BLAST of ClCG02G018380 vs. ExPASy TrEMBL
Match: A0A5A7UHX0 (Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00090 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 219/243 (90.12%), Postives = 230/243 (94.65%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SPIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPGTPSTPSTPS+PST
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           PSTP+IPTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

Query: 241 PRA 244
           PRA
Sbjct: 241 PRA 237

[Close]

BLAST of ClCG02G018380 vs. ExPASy TrEMBL
Match: A0A1S3C4A9 (protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.4e-112
Identity = 219/243 (90.12%), Postives = 230/243 (94.65%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MRSKQ SALLFTLLAGLLSQSLLIPV STSI DQKSYYSPPDPH+G+PP+GSH SPIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HG GGT PHYSTPTPST    PSGGGGYYNPPSS GGSPP+TPVDPGTPSTPSTPS+PST
Sbjct: 61  HGNGGT-PHYSTPTPST----PSGGGGYYNPPSS-GGSPPSTPVDPGTPSTPSTPSVPST 120

Query: 121 PSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRT 180
           PSTP+IPTTPFTCNYWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQAL+NTR 
Sbjct: 121 PSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRN 180

Query: 181 DGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTFKLANEGKIK 240
           DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSN+AA DQANTFKLANEGKIK
Sbjct: 181 DGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIK 237

Query: 241 PRA 244
           PRA
Sbjct: 241 PRA 237

[Close]

BLAST of ClCG02G018380 vs. ExPASy TrEMBL
Match: A0A6J1G5M6 (protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.0e-111
Identity = 218/249 (87.55%), Postives = 227/249 (91.16%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HGYGGTPPHYSTPTPSTP+K PSGG GYYNPPS  GGS PTTPVDPGTPSTPSTPS PST
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPS---------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNL 180
           PSTPS          PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNLNL
Sbjct: 121 PSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNL 180

Query: 181 LQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQANTF 240
           LQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQAN F
Sbjct: 181 LQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIF 240

[Close]

BLAST of ClCG02G018380 vs. ExPASy TrEMBL
Match: A0A6J1I3W1 (protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.9e-111
Identity = 219/252 (86.90%), Postives = 227/252 (90.08%), Query Frame = 0


Query: 1   MRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPS 60
           MR+KQ S LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPPDPHAGTPPTGSHS+PIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPSIPST 120
           HGYGGTPPHYSTPTPSTPSK PSG  GYYNPPSS GGS PTTPVDPGTPSTPSTPS PST
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSS-GGSTPTTPVDPGTPSTPSTPSTPST 120

Query: 121 PSTPS------------IPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTN 180
           PSTPS             PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTN
Sbjct: 121 PSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTN 180

Query: 181 LNLLQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNRAAADQA 240
           LNLLQAL+NTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SNRAAADQA
Sbjct: 181 LNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQA 240

[Close]

BLAST of ClCG02G018380 vs. TAIR 10
Match: AT2G42840.1 (protodermal factor 1 )

HSP 1 Score: 191.8 bits (486), Expect = 6.4e-49
Identity = 139/303 (45.87%), Postives = 171/303 (56.44%), Query Frame = 0


Query: 7   SALLFTLLAGLLSQSLLIPVFSTSIADQKSYY-SPPDPHAGTPPT--------------- 66
           S  ++ L A LLSQ L   V S    D K+YY SPP    GTPP+               
Sbjct: 6   SFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDP 65

Query: 67  --GSHSSPIPPSH---------------------------------GYGGTPPHYSTPTP 126
              + S P PPSH                                  +  TP H STP+ 
Sbjct: 66  SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125

Query: 127 STPSKPPSGGGGYYNPPSSGGG---SPPTTPVDPGTP---STPSTPSI-PSTPSTPSIPT 186
            TPS PPS  GGYY+ P        +PP+  VDPGTP    +P TP I P TP TP IP 
Sbjct: 126 PTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIP- 185

Query: 187 TPF-----TCNYWLNHPGMIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALANTR 243
            PF     TC+YW NHP +IWG+LGWWGT+G AFG     +++PGF  ++NLLQAL+NTR
Sbjct: 186 APFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTR 245

The following BLAST results are available for this feature:

BLAST of ClCG02G018380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900371.1	8.2e-123	95.49	protodermal factor 1-like [Benincasa hispida]	[more]
XP_004143175.1	1.5e-113	89.71	protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_0206...	[more]
XP_008456355.1	2.9e-112	90.12	PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal fa...	[more]
XP_022947015.1	4.2e-111	87.55	protodermal factor 1-like [Cucurbita moschata]	[more]
XP_022970795.1	1.2e-110	86.90	protodermal factor 1-like [Cucurbita maxima]	[more]

BLAST of ClCG02G018380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S728	9.0e-48	45.87	Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1	[more]

BLAST of ClCG02G018380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF76	7.5e-114	89.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1	[more]
A0A5A7UHX0	1.4e-112	90.12	Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C4A9	1.4e-112	90.12	protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1	[more]
A0A6J1G5M6	2.0e-111	87.55	protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=...	[more]
A0A6J1I3W1	5.9e-111	86.90	protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1	[more]

BLAST of ClCG02G018380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42840.1	6.4e-49	45.87	protodermal factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..125
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 1..243
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 1..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G018380.1	ClCG02G018380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane