ClCG02G016890 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G016890
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	GRF1-interacting factor 1
Location	CG_Chr02: 31364587 .. 31368621 (-)
RNA-Seq Expression	ClCG02G016890
Synteny	ClCG02G016890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAGAAACCCAAAAGCAAGGGGGCATCTCGAATCAGCCGTTTCTGTGAAAAACTCATCATTCTTATTACACAAATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTATCCCAACAACGTCACTACTGATCACATTCAACAGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTTTATTTTAGTCTTTTAATCAATCTATCTATCCATTTCTATTTTTTTTTCATTCATTTCCCCTCTTTCTTTCAAGTGGGGTTTCTTTGTTTTTCAACTTAGGGATGATTGTCTTTCTTCCCTTTTCCACTTTTCTTCCTTTTTAAAATACTGGGTTTTGTTTAGTTTGCTTTCTTTCACGTGCCCTTGTCTCTATTGAATGGATTTCATTATCTAATTACAAAAGCTGAGACCAATCCATCTATGGGTATCTTGTTTATTTCCATCTCTTTTCTTGATTAAGTATTTGTTTCCATGTTGGTCTAAAGATAATCACTGTGTTTCTTTCAATTGCATGATTGACTTCTGCCTTTTAGCCTTAATCTTAATGGAAAAGGAAGCTGAACTGGTTGGATAGTGGCTTTTTCATGCTTTTTTTCCCTCTCTCTATCAATCAAGTGGGGGAAAAAGTGGCATGTTGGGACTTAAAAATGTTGAGAGCTTGAGCTTGATTTAGATGCTTGAAATATCCTTGATTAAGTGACTTATTCGGTAGTCTTTTTCAAAGAAAAAAAAAAAGTGGCTTATTGGGTAATGTATGAAACAGTTGAGAGCTTGAACCCTTTGAGGATCACAAGTTTGTTAGTTCTTATATTGATTATTCTTTTATTCCTTTTCTCTGGTTAACTTTGTAATGTTATCGTTTTACATTGACATAAGCATGTTGGAAGTTTAAATCTCATTTCAATTCATTGCATCTTAACTTGTTGCAAATGAATGTACTATTGAAGTACTTAAACGTGTTTTCTAACTTCTATTATATCTTAACTTAATATTTGGGGTGTGATCGAATGTTCTCATAACCCACCTTATATTCTTAGCCACCCAAGATATAATAATTCAATGGCTTTCTTGAGAACTAAGTGTTAATAGGATCAAGTTGTTGTCATATGAGATTAGTCGATGTGCGGGTAAGGTGTCTTGAATACTCACACACACACATATATAATATATATATAAAGAAGTAAGCTTCCTTTTATCTTTTAAGTTGAAAAATATTAATGTGCTAAAGTATCAAACTGATGGGGGTAATGCAAGTCTTTTCTTAGCTTGACACTTCTTGTTGATGATTTTTTTTTTAATTATTCTGTGATGAATTATGATTAGGATATTGTAAAAGTAAATCTATATAAGTAGAGAAGTTAAAAGTGTTCATATATTATCTTTTATCATGCTAAGATGGGAGAGAGAAGCTTGAATAGTGACTGGTCAATCATGAAACAGTATTTTAAGTTGCTGTCTAGCTCTGATTCTTCTGAGTTGCTTTCAAGGATCATACATTTCATTACATTCAGCACTTGCTTTTTAAGGTTTATTATGTCTGATCAATCAAATCTAACAATATATATGCTACGTATTTGGTAGATTCTGCTCAATTTTAGGAGTTTCAATCTGTTAATTTTTTGTATGTCCAAAATAAGCAATTCTTGTTTCCAAGAATGACCTGTTAAACTAGTTAATATGTTCCTTTTCTTTATTTCCTTTCTTCTTATTTTACAGACACCAATACTATAGTTATTTAATTTTTCATCCAACAGCGATTTTCGGCAACTTCTTAACTTGATATTTTCATAATTTTCTAACTTATTATTTGATAATCCATGTTGCAGTATCTGGATGAGAACAAGTCGCTGATATTGAAGATTGTTGAAAGCCAAAACTCGGGAAAATTGAATGAATGTGCAGAGTAAGAATTTATGCTTTCTCTAATGATTCTACCTAGTATAAATGAATGCTATTGCAATGCCAATTTTTTTTCCTTTGCATGTGACTGTTTTTGTTGCATTCGTTCACAAATTATCCTCTCTAGCTCTCGCTACATATCTTTTTTCTCTCTTCCTTTCTGTTTATATTGTGTTAATTGTATAATTCAGCATATATCTGTGGCTGTAATGATCCAAGGAAGTATGTAGCAGAAATGTTGCATTACATCACTTTTTATGTTGAGTGTCATAATGTGAATTTTCTTTTTCAGTTTAATATAATGGGTTCTAGGATGAAGAAACATTTTGATATCTAGCCTGGGGAAAATCTTGTTCTAGTATTGTTTAAACAGGCTTCTTTTGGAGGTTTTCTTTGGTAGTGATCCTCCCTGATAGTACTGATAAGGCCACTGTCTCTTTCTGCTTGATCATTTTTGTATTTGTTTCAAAATCAGATTCATGGTGATCATAGTTCTACTTGAGTGTGTAAAAATGTTCACGGATGAAAAGTGGAATGATATATAACCCTTCACCAAATATTCAATTTCTGAGTCGGATGCAGGGAAACTAAAACATTATCATATGATTTATTCGAAAAGAAGCCCAAAAATGAAAATATCTAAATTGGTTGTTAAAGCAGGGTATATCCTAGTAGTATGAACTTATCCATCTTCCATAAAAGAGTGGAATAACATCAGGGTTCTTCGATTAGTTTGATTTCAATACACATCAAGTGATGATACGATATCGACTGTAGTCCCTGGCTTCCGAGACTGGTAACAGGGATTTGATTCATGTTTTTCAATTATCTTGCATTTCTAGACTTCATTTGGTGATATGGTTATTAGTTTTGAAGTGTAAAAGTAAGTCTCTTACATTTTTCTCTGCAGGAATCAAGCTAGGCTACAGAGAAACCTCATGTACCTGGCTGCCATTGCTGATTCTCAACCTCAACCTTCTGCCATGCATGCCCAGGTATGGACATAATTGTTTGAAGATGTAAATTTATCCAATCACTAGCTGTGCATAGTTATAGAAAATCTGTTGTCGATACTGTTAGTTTAACACCCTGATATTTTGCTTTCAAGAGAACTCTTGGCTGTAGGAACCATTTCCACTACATACATTTTTCCTCCAACACTCACTTTGGCCACGATTGTGATCTGAAACTCGAGTTCTTCAAGGCCGTTATCCTCTGGATTTAGACAGATGTGCTTTGTTTGACCTACTTGATACTAAGGATTTTAAGTTATTTAAGTTACAGATTTAGGTGCTTTGTCCAAACATGTCAAAGTCTTCACTTTCTTTTTCTCTTTTTCCCTTTTTCCTAACCTTCAAACTAAATTGAATTGGGACTAGTCTAAGATGCTTTGCTTTTGTCATGTTCTCTTCAGTACTCTTCCAGTGGCATAATCCAACCAGGAGGGCATTACATTCAGCACCAACAAGCTCAGCAGATGACGCCACAATCTCTGATGGCCGCCCGGTCCTCTATGTTGTACTCTCAGCAGCCATTTTCGACACTGCAGCAGCAAGCTTTGCACGGCCAACTCGGGATGAACTCCGGAGGAGGCATAGGATTCAATATGCTGCAAAATGATGCCACCAATGCAGGAGGAGGAAATGGAGCACTCGGAGGAGGAGGCTTTCCAGATTTTGGCCATGGCGCTGCAGGTGACAGCTTGCACCGGAGCCTAGCCGGTGGGAGCAAGCAAGATATGGGAGGAACCGGTTCTGCCGAGGGACGAGGAGGGAGCTCCGGGAGCCATGGTGGTGATGGAGGCGAGACTCTCTACTTGAAATCAGCTGATGATGGGAACTGAAAGTATGAGGAAAAAGTTGCCTTGTTCAGTGAGTTGATGGTAGAAAACTAGGTACAATAGAAATTAGGAAGATAAAAGAAGAGAAGAAACCTTCTTACTAAAAAAGCTCTTGCTTTATCTTATGTGTAAACAATGGTGTGAGGATTCAAACCTCATAAAACTTTGACCTTTGGTGTCCTTTTTCCATGTTAAGATATGTGCCTGTAGTGTATTATGTAAATTTTCTTCTCTTCTATGCTATCCCTTGCTCACTTCTTTT

mRNA sequence

AAAAAAAAAAAGAAACCCAAAAGCAAGGGGGCATCTCGAATCAGCCGTTTCTGTGAAAAACTCATCATTCTTATTACACAAATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTATCCCAACAACGTCACTACTGATCACATTCAACAGTATCTGGATGAGAACAAGTCGCTGATATTGAAGATTGTTGAAAGCCAAAACTCGGGAAAATTGAATGAATGTGCAGAGAATCAAGCTAGGCTACAGAGAAACCTCATGTACCTGGCTGCCATTGCTGATTCTCAACCTCAACCTTCTGCCATGCATGCCCAGAGAACTCTTGGCTGTAGGAACCATTTCCACTACATACATTTTTCCTCCAACACTCACTTTGGCCACGATTGTGATCTGAAACTCGAGTTCTTCAAGGCCTACTCTTCCAGTGGCATAATCCAACCAGGAGGGCATTACATTCAGCACCAACAAGCTCAGCAGATGACGCCACAATCTCTGATGGCCGCCCGGTCCTCTATGTTGTACTCTCAGCAGCCATTTTCGACACTGCAGCAGCAAGCTTTGCACGGCCAACTCGGGATGAACTCCGGAGGAGGCATAGGATTCAATATGCTGCAAAATGATGCCACCAATGCAGGAGGAGGAAATGGAGCACTCGGAGGAGGAGGCTTTCCAGATTTTGGCCATGGCGCTGCAGGTGACAGCTTGCACCGGAGCCTAGCCGGTGGGAGCAAGCAAGATATGGGAGGAACCGGTTCTGCCGAGGGACGAGGAGGGAGCTCCGGGAGCCATGGTGGTGATGGAGGCGAGACTCTCTACTTGAAATCAGCTGATGATGGGAACTGAAAGTATGAGGAAAAAGTTGCCTTGTTCAGTGAGTTGATGGTAGAAAACTAGGTACAATAGAAATTAGGAAGATAAAAGAAGAGAAGAAACCTTCTTACTAAAAAAGCTCTTGCTTTATCTTATGTGTAAACAATGGTGTGAGGATTCAAACCTCATAAAACTTTGACCTTTGGTGTCCTTTTTCCATGTTAAGATATGTGCCTGTAGTGTATTATGTAAATTTTCTTCTCTTCTATGCTATCCCTTGCTCACTTCTTTT

Coding sequence (CDS)

ATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTATCCCAACAACGTCACTACTGATCACATTCAACAGTATCTGGATGAGAACAAGTCGCTGATATTGAAGATTGTTGAAAGCCAAAACTCGGGAAAATTGAATGAATGTGCAGAGAATCAAGCTAGGCTACAGAGAAACCTCATGTACCTGGCTGCCATTGCTGATTCTCAACCTCAACCTTCTGCCATGCATGCCCAGAGAACTCTTGGCTGTAGGAACCATTTCCACTACATACATTTTTCCTCCAACACTCACTTTGGCCACGATTGTGATCTGAAACTCGAGTTCTTCAAGGCCTACTCTTCCAGTGGCATAATCCAACCAGGAGGGCATTACATTCAGCACCAACAAGCTCAGCAGATGACGCCACAATCTCTGATGGCCGCCCGGTCCTCTATGTTGTACTCTCAGCAGCCATTTTCGACACTGCAGCAGCAAGCTTTGCACGGCCAACTCGGGATGAACTCCGGAGGAGGCATAGGATTCAATATGCTGCAAAATGATGCCACCAATGCAGGAGGAGGAAATGGAGCACTCGGAGGAGGAGGCTTTCCAGATTTTGGCCATGGCGCTGCAGGTGACAGCTTGCACCGGAGCCTAGCCGGTGGGAGCAAGCAAGATATGGGAGGAACCGGTTCTGCCGAGGGACGAGGAGGGAGCTCCGGGAGCCATGGTGGTGATGGAGGCGAGACTCTCTACTTGAAATCAGCTGATGATGGGAACTGA

Protein sequence

MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGIIQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNMLQNDATNAGGGNGALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHGGDGGETLYLKSADDGN

Homology

[Close]

BLAST of ClCG02G016890 vs. NCBI nr
Match: XP_004139249.1 (GRF1-interacting factor 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 1.4e-104
Identity = 218/257 (84.82%), Postives = 220/257 (85.60%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGM 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGN-GALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 240
           QNDA NAGGGN GALGGGGFPDFGHGAA DSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH
Sbjct: 181 QNDAANAGGGNGGALGGGGFPDFGHGAASDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 224

Query: 241 GGDGGETLYLKSADDGN 257
           GGDGGETLYLKSADDGN
Sbjct: 241 GGDGGETLYLKSADDGN 224

[Close]

BLAST of ClCG02G016890 vs. NCBI nr
Match: XP_008456296.1 (PREDICTED: GRF1-interacting factor 1 [Cucumis melo])

HSP 1 Score: 389.4 bits (999), Expect = 2.4e-104
Identity = 218/257 (84.82%), Postives = 220/257 (85.60%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGM 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGN-GALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 240
           QNDA NAGGGN GALGGGGFPDFGHGAA DSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH
Sbjct: 181 QNDAGNAGGGNGGALGGGGFPDFGHGAASDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 224

Query: 241 GGDGGETLYLKSADDGN 257
           GGDGGETLYLKSADDGN
Sbjct: 241 GGDGGETLYLKSADDGN 224

[Close]

BLAST of ClCG02G016890 vs. NCBI nr
Match: XP_022965913.1 (GRF1-interacting factor 1-like [Cucurbita maxima])

HSP 1 Score: 382.5 bits (981), Expect = 2.9e-102
Identity = 211/256 (82.42%), Postives = 215/256 (83.98%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGL 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLY+QQPFS+LQQQALH QLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQPFSSLQQQALHSQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGNGALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHG 240
           QNDA NAGG  GALGGGGFPDF H AA DSLHRSLAGGSKQDMGGTGS EGRGGSSGSHG
Sbjct: 181 QNDAANAGGNGGALGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHG 223

Query: 241 GDGGETLYLKSADDGN 257
           GDGGETLYLKSADDGN
Sbjct: 241 GDGGETLYLKSADDGN 223

[Close]

BLAST of ClCG02G016890 vs. NCBI nr
Match: KAE8651552.1 (hypothetical protein Csa_019498 [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 8.4e-102
Identity = 213/252 (84.52%), Postives = 215/252 (85.32%), Query Frame = 0


Query: 6   MQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYL 65
           MQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYL
Sbjct: 1   MQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYL 60

Query: 66  AAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGIIQPGG 125
           AAIADSQPQPSAMHAQ                                 YSSSG+IQPGG
Sbjct: 61  AAIADSQPQPSAMHAQ---------------------------------YSSSGMIQPGG 120

Query: 126 HYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNMLQNDAT 185
           HYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGM+SGGGIGFNMLQNDA 
Sbjct: 121 HYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMSSGGGIGFNMLQNDAA 180

Query: 186 NAGGGN-GALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHGGDGG 245
           NAGGGN GALGGGGFPDFGHGAA DSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHGGDGG
Sbjct: 181 NAGGGNGGALGGGGFPDFGHGAASDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHGGDGG 219

Query: 246 ETLYLKSADDGN 257
           ETLYLKSADDGN
Sbjct: 241 ETLYLKSADDGN 219

[Close]

BLAST of ClCG02G016890 vs. NCBI nr
Match: XP_022937932.1 (GRF1-interacting factor 1-like [Cucurbita moschata])

HSP 1 Score: 377.9 bits (969), Expect = 7.1e-101
Identity = 211/257 (82.10%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGL 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLY+QQPFS+LQQQALH QLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQPFSSLQQQALHSQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGNGAL-GGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 240
           QNDA NAGG  GAL GGGGFPDF H AA DSLHRSLAGGSKQDMGGTGS EGRGGSSGSH
Sbjct: 181 QNDAANAGGNGGALGGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSH 224

Query: 241 GGDGGETLYLKSADDGN 257
           GGDGGETLYLKSADDGN
Sbjct: 241 GGDGGETLYLKSADDGN 224

[Close]

BLAST of ClCG02G016890 vs. ExPASy Swiss-Prot
Match: Q8L8A5 (GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.9e-57
Identity = 153/271 (56.46%), Postives = 172/271 (63.47%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMA YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQP ++H+Q                   +G             +  G+
Sbjct: 61  NLMYLAAIADSQPQPPSVHSQ-------------------YGS------------AGGGM 120

Query: 121 IQ--PGGHYIQHQQA---QQMTPQSLMAARSSMLYS-----QQPFSTLQQQAL-HGQLGM 180
           IQ   G HY+Q QQA   QQMT QSLMAARSSMLY+     QQP++TLQ Q L H QLGM
Sbjct: 121 IQGEGGSHYLQQQQATQQQQMTQQSLMAARSSMLYAQQQQQQQPYATLQHQQLHHSQLGM 180

Query: 181 NS----GGGIGFNMLQNDATNAGGGNGALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGG 240
           +S    GG  G ++LQ +A            GGF DFG G              K +MG 
Sbjct: 181 SSSSGGGGSSGLHILQGEA------------GGFHDFGRG--------------KPEMGS 210

Query: 241 TGSAEGRGGSSGSHGGDGGETLYLKSADDGN 257
            G  EGRGGSS    GDGGETLYLKS+DDGN
Sbjct: 241 GGGGEGRGGSS----GDGGETLYLKSSDDGN 210

[Close]

BLAST of ClCG02G016890 vs. ExPASy Swiss-Prot
Match: Q6AVI1 (GRF-interacting factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-35
Identity = 123/269 (45.72%), Postives = 148/269 (55.02%), Query Frame = 0


Query: 2   QQHLMQM-QPMMAAY-YPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQ 61
           QQHLMQM Q MM  Y  P  VTTD IQQYLDENK LIL I+++QN+GK+ ECA NQA+LQ
Sbjct: 3   QQHLMQMNQGMMGGYASPTTVTTDLIQQYLDENKQLILAILDNQNNGKVEECARNQAKLQ 62

Query: 62  RNLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSG 121
            NLMYLAAIADSQP  +A  +Q                                 Y S+ 
Sbjct: 63  HNLMYLAAIADSQPPQTAAMSQ---------------------------------YPSNL 122

Query: 122 IIQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQ------ALHGQLGMNSGG 181
           ++Q G  Y+  Q AQ M PQSLMAARSSM+Y+Q   S LQQQ      A HGQLGM SGG
Sbjct: 123 MMQSGARYMPQQSAQMMAPQSLMAARSSMMYAQPALSPLQQQQQQQAAAAHGQLGMGSGG 182

Query: 182 GI-GFNMLQNDATNAGGGNGA------LGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGT 241
              GF++L  +A+  GGG G       +  G F DFG G           GG K+  G T
Sbjct: 183 TTSGFSILHGEASMGGGGGGGGAGNSMMNAGVFSDFGRGG---------GGGGKE--GST 224

Query: 242 G-SAEGRGGSSGSHGGDGGETLYLKSADD 255
             S + RG +SG+  GDG    YLK  ++
Sbjct: 243 SLSVDVRGANSGAQSGDGE---YLKGTEE 224

[Close]

BLAST of ClCG02G016890 vs. ExPASy Swiss-Prot
Match: A5HEH4 (GRF-interacting factor 1 OS=Zea mays OX=4577 GN=GIF1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-31
Identity = 120/271 (44.28%), Postives = 146/271 (53.87%), Query Frame = 0


Query: 2   QQHLMQM-QPMMAAY-YPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQ 61
           QQHLMQM Q MM  Y  P  VTTD IQQYLDENK LIL I+++QN+GK  EC  +QA+LQ
Sbjct: 3   QQHLMQMNQNMMGGYTSPAAVTTDLIQQYLDENKQLILAILDNQNNGKAEECERHQAKLQ 62

Query: 62  RNLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSG 121
            NLMYLAAIADSQP  +A  +Q                                 Y S+ 
Sbjct: 63  HNLMYLAAIADSQPPQTAPLSQ---------------------------------YPSNL 122

Query: 122 IIQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTL-QQQALHGQLGMNSGGG---- 181
           ++QPG  Y+  Q  Q M PQSLMAARSSM+Y+    S L QQQA HGQLGM  GGG    
Sbjct: 123 MMQPGPRYMPPQSGQMMNPQSLMAARSSMMYAHPSLSPLQQQQAAHGQLGMAPGGGGGGT 182

Query: 182 -IGFNMLQNDATNAGGGNGA------LGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTG 241
             GF++L  +A+  GGG GA      +  G F  FG              GS    G T 
Sbjct: 183 TSGFSILHGEASMGGGGAGAGAGNNMMNAGMFSGFGR------------SGSGAKEGSTS 227

Query: 242 -SAEGRGG-SSGSHGGDGGETLYLKSADDGN 257
            S + RGG SSG+  GD GE L + + ++G+
Sbjct: 243 LSVDVRGGTSSGAQSGD-GEYLKVGTEEEGS 227

[Close]

BLAST of ClCG02G016890 vs. ExPASy Swiss-Prot
Match: Q9MAL9 (GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-17
Identity = 76/206 (36.89%), Postives = 101/206 (49.03%), Query Frame = 0


Query: 2   QQHLMQMQPMMAAYYP-NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 61
           QQ   QM PM+ +  P NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 3   QQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQK 62

Query: 62  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 121
           NLMYLAAIAD+QP P                          G      +    A   SG 
Sbjct: 63  NLMYLAAIADAQPPPPTP-----------------------GPSPSTAVAAQMATPHSG- 122

Query: 122 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQ-------QPFSTLQQQALHGQLGMNSGG 181
           +QP  +++QH QA   +P  + A R  + +         Q    + QQA+ G +G+   G
Sbjct: 123 MQPPSYFMQHPQA---SPAGIFAPRGPLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMG 181

Query: 182 GIGFNM---LQNDATNAGGGNGALGG 197
                M   +Q   T  GG  G  GG
Sbjct: 183 MTNNGMQHAMQQPETGLGGNVGLRGG 181

[Close]

BLAST of ClCG02G016890 vs. ExPASy Swiss-Prot
Match: Q93VH6 (GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-17
Identity = 92/262 (35.11%), Postives = 123/262 (46.95%), Query Frame = 0


Query: 3   QHLMQMQPMMAAYYP--NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 62
           Q   QM PM+   +P  NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 2   QQSPQMIPMVLPSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQK 61

Query: 63  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 122
           NLMYLAAIAD+QPQP A  A  T G                            A + S +
Sbjct: 62  NLMYLAAIADAQPQPPA--ATLTSGAMT---------------------PQAMAPNPSSM 121

Query: 123 IQPGGHYIQHQQA---QQMTPQSLMAARSSMLYSQ-----QPFSTLQQQALHGQ-----L 182
             P  +++Q  QA    Q  P  +   R  + +        P   L QQA+ G      +
Sbjct: 122 QPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGSPHQFLDPQQQLHQQAMQGHMGIRPM 181

Query: 183 GMNSGGGIGFNMLQND---ATNAGGGNGALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMG 242
           G+N+  G+   M  ++   A N  G N A  GGG PD                G+     
Sbjct: 182 GLNNNNGLQHQMHHHETALAANNAGPNDA-SGGGKPD----------------GTNMSQS 220

Query: 243 GTGSAEGRGGSSGSHGGDGGET 247
           G   A+G+GGS+  HGG   +T
Sbjct: 242 G---ADGQGGSAARHGGGDAKT 220

[Close]

BLAST of ClCG02G016890 vs. ExPASy TrEMBL
Match: A0A0A0LL92 (SSXT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010170 PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 6.7e-105
Identity = 218/257 (84.82%), Postives = 220/257 (85.60%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGM 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGN-GALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 240
           QNDA NAGGGN GALGGGGFPDFGHGAA DSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH
Sbjct: 181 QNDAANAGGGNGGALGGGGFPDFGHGAASDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 224

Query: 241 GGDGGETLYLKSADDGN 257
           GGDGGETLYLKSADDGN
Sbjct: 241 GGDGGETLYLKSADDGN 224

[Close]

BLAST of ClCG02G016890 vs. ExPASy TrEMBL
Match: A0A1S3C305 (GRF1-interacting factor 1 OS=Cucumis melo OX=3656 GN=LOC103496282 PE=3 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.1e-104
Identity = 218/257 (84.82%), Postives = 220/257 (85.60%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYY NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYSNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGM 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGN-GALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 240
           QNDA NAGGGN GALGGGGFPDFGHGAA DSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH
Sbjct: 181 QNDAGNAGGGNGGALGGGGFPDFGHGAASDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 224

Query: 241 GGDGGETLYLKSADDGN 257
           GGDGGETLYLKSADDGN
Sbjct: 241 GGDGGETLYLKSADDGN 224

[Close]

BLAST of ClCG02G016890 vs. ExPASy TrEMBL
Match: A0A6J1HQC1 (GRF1-interacting factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465656 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.4e-102
Identity = 211/256 (82.42%), Postives = 215/256 (83.98%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGL 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLY+QQPFS+LQQQALH QLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQPFSSLQQQALHSQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGNGALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSHG 240
           QNDA NAGG  GALGGGGFPDF H AA DSLHRSLAGGSKQDMGGTGS EGRGGSSGSHG
Sbjct: 181 QNDAANAGGNGGALGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSHG 223

Query: 241 GDGGETLYLKSADDGN 257
           GDGGETLYLKSADDGN
Sbjct: 241 GDGGETLYLKSADDGN 223

[Close]

BLAST of ClCG02G016890 vs. ExPASy TrEMBL
Match: A0A6J1FCK8 (GRF1-interacting factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444175 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.4e-101
Identity = 211/257 (82.10%), Postives = 215/257 (83.66%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGL 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTLQQQALHGQLGMNSGGGIGFNML 180
           IQPGGHYIQHQQAQQMTPQSLMAARSSMLY+QQPFS+LQQQALH QLGM+SGGGIGFNML
Sbjct: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYTQQPFSSLQQQALHSQLGMSSGGGIGFNML 180

Query: 181 QNDATNAGGGNGAL-GGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGSH 240
           QNDA NAGG  GAL GGGGFPDF H AA DSLHRSLAGGSKQDMGGTGS EGRGGSSGSH
Sbjct: 181 QNDAANAGGNGGALGGGGGFPDFSHNAAADSLHRSLAGGSKQDMGGTGSGEGRGGSSGSH 224

Query: 241 GGDGGETLYLKSADDGN 257
           GGDGGETLYLKSADDGN
Sbjct: 241 GGDGGETLYLKSADDGN 224

[Close]

BLAST of ClCG02G016890 vs. ExPASy TrEMBL
Match: A0A6J1CPL3 (GRF1-interacting factor 1 OS=Momordica charantia OX=3673 GN=LOC111013134 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 208/258 (80.62%), Postives = 214/258 (82.95%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQPSAMHAQ                                 YSSSG+
Sbjct: 61  NLMYLAAIADSQPQPSAMHAQ---------------------------------YSSSGL 120

Query: 121 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQQPFSTL-QQQALHGQLGMNSGGGIGFNM 180
           +QPGGHY+QHQQAQQMTPQSLMAARSSMLY QQ FS L QQQALH QLGM+SGGGIGFNM
Sbjct: 121 MQPGGHYLQHQQAQQMTPQSLMAARSSMLYPQQQFSALQQQQALHSQLGMSSGGGIGFNM 180

Query: 181 LQNDATNAGGGN-GALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGGTGSAEGRGGSSGS 240
           LQND +NAGGGN GALG GGFPDFGH AAGDSLHR LAGGSKQDMG TGSAEGRGGSSGS
Sbjct: 181 LQNDTSNAGGGNGGALGAGGFPDFGHSAAGDSLHRGLAGGSKQDMGATGSAEGRGGSSGS 225

Query: 241 HGGDGGETLYLKSADDGN 257
           HGGDGGETLYLK+ADDGN
Sbjct: 241 HGGDGGETLYLKAADDGN 225

[Close]

BLAST of ClCG02G016890 vs. TAIR 10
Match: AT5G28640.1 (SSXT family protein )

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-58
Identity = 153/271 (56.46%), Postives = 172/271 (63.47%), Query Frame = 0


Query: 1   MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 60
           MQQHLMQMQPMMA YYP+NVT+DHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQR
Sbjct: 1   MQQHLMQMQPMMAGYYPSNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQR 60

Query: 61  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 120
           NLMYLAAIADSQPQP ++H+Q                   +G             +  G+
Sbjct: 61  NLMYLAAIADSQPQPPSVHSQ-------------------YGS------------AGGGM 120

Query: 121 IQ--PGGHYIQHQQA---QQMTPQSLMAARSSMLYS-----QQPFSTLQQQAL-HGQLGM 180
           IQ   G HY+Q QQA   QQMT QSLMAARSSMLY+     QQP++TLQ Q L H QLGM
Sbjct: 121 IQGEGGSHYLQQQQATQQQQMTQQSLMAARSSMLYAQQQQQQQPYATLQHQQLHHSQLGM 180

Query: 181 NS----GGGIGFNMLQNDATNAGGGNGALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMGG 240
           +S    GG  G ++LQ +A            GGF DFG G              K +MG 
Sbjct: 181 SSSSGGGGSSGLHILQGEA------------GGFHDFGRG--------------KPEMGS 210

Query: 241 TGSAEGRGGSSGSHGGDGGETLYLKSADDGN 257
            G  EGRGGSS    GDGGETLYLKS+DDGN
Sbjct: 241 GGGGEGRGGSS----GDGGETLYLKSSDDGN 210

[Close]

BLAST of ClCG02G016890 vs. TAIR 10
Match: AT1G01160.1 (GRF1-interacting factor 2 )

HSP 1 Score: 91.7 bits (226), Expect = 9.5e-19
Identity = 76/206 (36.89%), Postives = 101/206 (49.03%), Query Frame = 0


Query: 2   QQHLMQMQPMMAAYYP-NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 61
           QQ   QM PM+ +  P NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 3   QQQSPQMFPMVPSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQK 62

Query: 62  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 121
           NLMYLAAIAD+QP P                          G      +    A   SG 
Sbjct: 63  NLMYLAAIADAQPPPPTP-----------------------GPSPSTAVAAQMATPHSG- 122

Query: 122 IQPGGHYIQHQQAQQMTPQSLMAARSSMLYSQ-------QPFSTLQQQALHGQLGMNSGG 181
           +QP  +++QH QA   +P  + A R  + +         Q    + QQA+ G +G+   G
Sbjct: 123 MQPPSYFMQHPQA---SPAGIFAPRGPLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMG 181

Query: 182 GIGFNM---LQNDATNAGGGNGALGG 197
                M   +Q   T  GG  G  GG
Sbjct: 183 MTNNGMQHAMQQPETGLGGNVGLRGG 181

[Close]

BLAST of ClCG02G016890 vs. TAIR 10
Match: AT4G00850.1 (GRF1-interacting factor 3 )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 92/262 (35.11%), Postives = 123/262 (46.95%), Query Frame = 0


Query: 3   QHLMQMQPMMAAYYP--NNVTTDHIQQYLDENKSLILKIVESQNSGKLNECAENQARLQR 62
           Q   QM PM+   +P  NN+TT+ IQ+YLDENK LI+ I+E+QN GKL ECA+ QA LQ+
Sbjct: 2   QQSPQMIPMVLPSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQK 61

Query: 63  NLMYLAAIADSQPQPSAMHAQRTLGCRNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGI 122
           NLMYLAAIAD+QPQP A  A  T G                            A + S +
Sbjct: 62  NLMYLAAIADAQPQPPA--ATLTSGAMT---------------------PQAMAPNPSSM 121

Query: 123 IQPGGHYIQHQQA---QQMTPQSLMAARSSMLYSQ-----QPFSTLQQQALHGQ-----L 182
             P  +++Q  QA    Q  P  +   R  + +        P   L QQA+ G      +
Sbjct: 122 QPPPSYFMQQHQAVGMAQQIPPGIFPPRGPLQFGSPHQFLDPQQQLHQQAMQGHMGIRPM 181

Query: 183 GMNSGGGIGFNMLQND---ATNAGGGNGALGGGGFPDFGHGAAGDSLHRSLAGGSKQDMG 242
           G+N+  G+   M  ++   A N  G N A  GGG PD                G+     
Sbjct: 182 GLNNNNGLQHQMHHHETALAANNAGPNDA-SGGGKPD----------------GTNMSQS 220

Query: 243 GTGSAEGRGGSSGSHGGDGGET 247
           G   A+G+GGS+  HGG   +T
Sbjct: 242 G---ADGQGGSAARHGGGDAKT 220

[Close]

BLAST of ClCG02G016890 vs. TAIR 10
Match: AT1G01160.2 (GRF1-interacting factor 2 )

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-13
Identity = 76/240 (31.67%), Postives = 101/240 (42.08%), Query Frame = 0


Query: 2   QQHLMQMQPMMAAYYP-NNVTTDHIQQ--------------------------------- 61
           QQ   QM PM+ +  P NN+TT+ IQ+                                 
Sbjct: 3   QQQSPQMFPMVPSIPPANNITTEQIQKMLGGSGNFESGFQEWTLKLDACLMLLFCTFSWL 62

Query: 62  -YLDENKSLILKIVESQNSGKLNECAENQARLQRNLMYLAAIADSQPQPSAMHAQRTLGC 121
            YLDENK LI+ I+E+QN GKL ECA+ QA LQ+NLMYLAAIAD+QP P           
Sbjct: 63  DYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTP-------- 122

Query: 122 RNHFHYIHFSSNTHFGHDCDLKLEFFKAYSSSGIIQPGGHYIQHQQAQQMTPQSLMAARS 181
                          G      +    A   SG +QP  +++QH QA   +P  + A R 
Sbjct: 123 ---------------GPSPSTAVAAQMATPHSG-MQPPSYFMQHPQA---SPAGIFAPRG 182

Query: 182 SMLYSQ-------QPFSTLQQQALHGQLGMNSGGGIGFNM---LQNDATNAGGGNGALGG 197
            + +         Q    + QQA+ G +G+   G     M   +Q   T  GG  G  GG
Sbjct: 183 PLQFGSPLQFQDPQQQQQIHQQAMQGHMGIRPMGMTNNGMQHAMQQPETGLGGNVGLRGG 215

The following BLAST results are available for this feature:

BLAST of ClCG02G016890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139249.1	1.4e-104	84.82	GRF1-interacting factor 1 isoform X2 [Cucumis sativus]	[more]
XP_008456296.1	2.4e-104	84.82	PREDICTED: GRF1-interacting factor 1 [Cucumis melo]	[more]
XP_022965913.1	2.9e-102	82.42	GRF1-interacting factor 1-like [Cucurbita maxima]	[more]
KAE8651552.1	8.4e-102	84.52	hypothetical protein Csa_019498 [Cucumis sativus]	[more]
XP_022937932.1	7.1e-101	82.10	GRF1-interacting factor 1-like [Cucurbita moschata]	[more]

BLAST of ClCG02G016890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8A5	2.9e-57	56.46	GRF1-interacting factor 1 OS=Arabidopsis thaliana OX=3702 GN=GIF1 PE=1 SV=1	[more]
Q6AVI1	1.4e-35	45.72	GRF-interacting factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GIF1 PE=1 S...	[more]
A5HEH4	2.1e-31	44.28	GRF-interacting factor 1 OS=Zea mays OX=4577 GN=GIF1 PE=1 SV=1	[more]
Q9MAL9	1.3e-17	36.89	GRF1-interacting factor 2 OS=Arabidopsis thaliana OX=3702 GN=GIF2 PE=1 SV=1	[more]
Q93VH6	1.7e-17	35.11	GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1	[more]

BLAST of ClCG02G016890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL92	6.7e-105	84.82	SSXT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010170 PE=3 S...	[more]
A0A1S3C305	1.1e-104	84.82	GRF1-interacting factor 1 OS=Cucumis melo OX=3656 GN=LOC103496282 PE=3 SV=1	[more]
A0A6J1HQC1	1.4e-102	82.42	GRF1-interacting factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465656 PE=3 ...	[more]
A0A6J1FCK8	3.4e-101	82.10	GRF1-interacting factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444175 PE=...	[more]
A0A6J1CPL3	1.2e-98	80.62	GRF1-interacting factor 1 OS=Momordica charantia OX=3673 GN=LOC111013134 PE=3 SV...	[more]

BLAST of ClCG02G016890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28640.1	2.1e-58	56.46	SSXT family protein	[more]
AT1G01160.1	9.5e-19	36.89	GRF1-interacting factor 2	[more]
AT4G00850.1	1.2e-18	35.11	GRF1-interacting factor 3	[more]
AT1G01160.2	1.6e-13	31.67	GRF1-interacting factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007726	SS18, N-terminal	PFAM	PF05030	SSXT	coord: 19..76 e-value: 1.4E-21 score: 75.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..256
None	No IPR available	PANTHER	PTHR23107:SF18	GRF1-INTERACTING FACTOR 1	coord: 114..256 coord: 1..82
IPR044779	SS18 family	PANTHER	PTHR23107	SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN	coord: 114..256 coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G016890.2	ClCG02G016890.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0048366	leaf development
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0048316	seed development
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003713	transcription coactivator activity