ClCG02G013860 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G013860
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CG_Chr02: 27980590 .. 27983212 (-)
RNA-Seq Expression	ClCG02G013860
Synteny	ClCG02G013860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCCACCCCAGCCTCTATATCAACAATATCCACAGTATCAACCTCCTAATTTTCCCCAATTTCTTCCCAGACCACCTTATCCTGGCTTTGCCCCAATGTTCCCCACATTACCACAACCTCTGTCCACCAAGCTCAATGACACCAATTACCTCTCCTTGAAGACCCAACTCATGAATGCAGTCATCGTCAATGGTCTTTAAGGATTTCTAGATGGTAGTGAGCCCTGCCCCCCTCAGTTCCTTGATGTTTAACAAACTCAGGTCAGTGACAATTTTACTTACTGGCACCCATTAAATAGGATATTGATGTGTTGGATTTACTCCTCTCTTCCCCAAAAAAAGATGGGTGAGATTGTTTCTTTTCAAACTGCTCATGAAATATGGGAGTCTCTTAGATATGTGTATCACTCCCATCTAAATTTTTAGTTTAATTTTTTTAAAAAAAATAATAATTATCTTAAATTATTTGGTTAGTTGTTTGAATTTTGAGAGTTCATTGAAATATGTTGAGGAATAATTCAATTTAAAGTAATCATGATAAAATATTTGAATTATTTGAAATTTGGTTAGATTTAAGAACTTGATTAATTTAAGAAAAAAAATGAAAATAAATTGGAATTGAATTTAAGTCGTAGAATTGATTTGTTAGGCATATATTTTGGTTAAATAAATTATTAAGCGGTGATTGAAAAAGATTTGATTCGATAGGTGGAGGAAAATTATATTAAATAAGTTGTGTTTTGTTTTGGGAAAAGGAAAAGGAATAGAAAAAGAAAAAAGGAAATCTAAATATATATATATTTATTTAAGCAAATCTTGAATTTCAGTGGATTTTGGTTCGTCATTTGCAAGCCACCGCCTAGCCGCTCTCTCTGTTCAACTTCTCCAGCATCATCTGTTTCTTGTGGGTTACGTCCGGATTTCAAGATTTGGTTAAGTCGGGACTGTTTTGGTAAGTACTTTTGTTTTTCTTGTAATTTCGTGATTACCCATTGGTGTTGATTTTAATTATTGTTACCCATTGAGTTTGGGTTTTAGATTCAAACTTCTAAGGATTTTGGAACTGGAAGCAAGTTATCCAAGCGGGTTAAATGGTCCATTTTGGTTGGACCCATTGTTTGAAGTATGTTAGAAGATTGTGACTTAGTTCCATTTTGGGTAAGATTATTTGGTTTAATTGTTGAGTAAATTGTATTTGGAATCAGGGCTAAAGACTTGATTTAAGTTTGGATCTATGTTCTAGGGTTTTAATTCAAGAATTTTGTGAGAATTGATTGCTTGGACATAATGCTAAGTTAAGTAATTTTATTACTGGAACTGCCCTTGAGCCGAGCAATTGTAGATAATTTTGAATGATTTGCTTAATTTGGGTGAAATTAAGTTACTTATATATAGAATCGTTTTATAAGTATGATGATATTAGAACATCTTTGATATGATTTATGATGTGATCTTTAGAGAAAGTGACGATTTACCCTCCTAATGCTACTATGATACTAGAAGCCGACGGGTTTCCTACTACGATACCGAAAGTCGACAGATTTTCTACTATGTTACCGAAAGCCTACGGGTTTCCTACTATGTTACCGAAAACCTACAGGTTTCCTACTATGCTACCGGGTGCTGACAAGTGCCCTACTACGTTTGTGAGCCTTCGGGCCACCAGATGTGTGTTAGGATAGGTTAAATTGCTTACTAGATGGTCATCTAGGATTAGTTATTTATGTAAGTCTCACTAGTATGATGCACTATTGGATATAAGTGTTTAGCCTGACCTCGGTAGTGGGGTTACTTACTAAGTATTTTGTATTTATTCTTTTCATGATTTGTTTTTTAGTTAAGGGAAATGACACATCGGCAAATGATGAAAGAAAATCTTGACGGTGCCATTGGGACTAGACTAATGCATGCTTCCGCACGAGTGTTCATGTTTTTCTTTCGTTTTAGTACTTGTGATTTGTTATTTGAACTAAAACTATGTTTTCCTTTATTTATTTCTTTATACCAAATTTTCGACTTTAATACATTAATGTTTTAGGGGTACCCGACTAAAAGTTTTTGGTTTAGACGATGATAAATTTATTTACCTTAGTGATGTTTCCTCGATTTTTAGTAAAATTATGAAAAATAGTCTTTTAAGATGTATGCATACAAATAGTGACAACCTAGTTCAAGTCCTAGGAGGTCGGGCCGTTACAAAACTACTGCTAAAATAATGGATTTAAAAGCTAAACTCCATAAAATTAGAAAAGATAGTCAGTCTGTTAACCAGTACTTGTCCCAGATTAAGGAAATTACATATCAATTTGCTGCCATAGGGGAACCAATTTCATATCGAGATCATTTGGGTCACATTTTGGATGACTTAAGAGTGGAATACAATGCTTTTGTTACTTCTATTCAGAATCAATCAGATACTCCTACCCTAGAAGATATACGTAGTTTATTATTAAGATATGAGGCAAGATTGGAAAAACACACTTTGGTTGATCAGTTAAATTTGGCTCAAGCTCACATTACTAGCCTTTCCATTCAACAAAATAACAAGAAGTCTCAACCTAAATTCCCCCCAAACTTCCCTCAATTTCGATCATTCCCACAAACTTCTCATAATCCCCTT

mRNA sequence

ATGCCCCCACCCCAGCCTCTATATCAACAATATCCACAGTATCAACCTCCTAATTTTCCCCAATTTCTTCCCAGACCACCTTATCCTGGCTTTGCCCCAATGTTCCCCACATTACCACAACCTCTGTCCACCAAGCTCAATGACACCAATTACCTCTCCTTGAAGACCCAACTCATGAATGCAGTCATCGTCAATGATGGTAGTGAGCCCTGCCCCCCTCAGTTCCTTGATGTCAGTGACAATTTTACTTACTGGCACCCATTAAATAGGATATTGATGTGTTGGATTTACTCCTCTCTTCCCCAAAAAAAGATGGGTGAGATTATTAAGGAAATTACATATCAATTTGCTGCCATAGGGGAACCAATTTCATATCGAGATCATTTGGGTCACATTTTGGATGACTTAAGAGTGGAATACAATGCTTTTGTTACTTCTATTCAGAATCAATCAGATACTCCTACCCTAGAAGATATACGTAGTTTATTATTAAGATATGAGGCAAGATTGGAAAAACACACTTTGGTTGATCAGTTAAATTTGGCTCAAGCTCACATTACTAGCCTTTCCATTCAACAAAATAACAAGAAGTCTCAACCTAAATTCCCCCCAAACTTCCCTCAATTTCGATCATTCCCACAAACTTCTCATAATCCCCTT

Coding sequence (CDS)

ATGCCCCCACCCCAGCCTCTATATCAACAATATCCACAGTATCAACCTCCTAATTTTCCCCAATTTCTTCCCAGACCACCTTATCCTGGCTTTGCCCCAATGTTCCCCACATTACCACAACCTCTGTCCACCAAGCTCAATGACACCAATTACCTCTCCTTGAAGACCCAACTCATGAATGCAGTCATCGTCAATGATGGTAGTGAGCCCTGCCCCCCTCAGTTCCTTGATGTCAGTGACAATTTTACTTACTGGCACCCATTAAATAGGATATTGATGTGTTGGATTTACTCCTCTCTTCCCCAAAAAAAGATGGGTGAGATTATTAAGGAAATTACATATCAATTTGCTGCCATAGGGGAACCAATTTCATATCGAGATCATTTGGGTCACATTTTGGATGACTTAAGAGTGGAATACAATGCTTTTGTTACTTCTATTCAGAATCAATCAGATACTCCTACCCTAGAAGATATACGTAGTTTATTATTAAGATATGAGGCAAGATTGGAAAAACACACTTTGGTTGATCAGTTAAATTTGGCTCAAGCTCACATTACTAGCCTTTCCATTCAACAAAATAACAAGAAGTCTCAACCTAAATTCCCCCCAAACTTCCCTCAATTTCGATCATTCCCACAAACTTCTCATAATCCCCTT

Protein sequence

MPPPQPLYQQYPQYQPPNFPQFLPRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNAVIVNDGSEPCPPQFLDVSDNFTYWHPLNRILMCWIYSSLPQKKMGEIIKEITYQFAAIGEPISYRDHLGHILDDLRVEYNAFVTSIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITSLSIQQNNKKSQPKFPPNFPQFRSFPQTSHNPL

Homology

[Close]

BLAST of ClCG02G013860 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-49
Identity = 124/261 (47.51%), Postives = 153/261 (58.62%), Query Frame = 0


Query: 16  PPNFPQFLPRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNAVIVN------DGSE 75
           PP  P FL +PP P  A  FPTLPQPL+ KLND N+L  K QL+NAVI N      DG+ 
Sbjct: 4   PPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTI 63

Query: 76  PCPPQFLD---VSDNFTY--WHPLNRILMCWIYSSLPQKKMGEI---------------- 135
             PPQFLD   +  N  Y  W   NR+LMCWIYSSL ++KMGE+                
Sbjct: 64  MPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRV 123

Query: 136 --------------------------------IKEITYQFAAIGEPISYRDHLGHILDDL 195
                                           IKEI  +FAA+GEP+SYRDHL H+LD L
Sbjct: 124 YDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGL 183

Query: 196 RVEYNAFVTSIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITSLSIQQNNK 216
             EYNAFVTSI N++D+P+LED+RSLLL YEARL+K   VDQLN+AQA++ +LS+Q N+K
Sbjct: 184 GSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSK 243

[Close]

BLAST of ClCG02G013860 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 123.6 bits (309), Expect = 2.1e-24
Identity = 96/280 (34.29%), Postives = 126/280 (45.00%), Query Frame = 0


Query: 13  QYQPPNFPQFL-----PRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNAVIVN-- 72
           Q  P N P         +PP P   P+ P++ QP + KL+  NYL  K QL+N +I N  
Sbjct: 19  QMPPTNIPNVQDQIIGAQPPLPPL-PILPSMNQPFTIKLDADNYLIWKNQLLNVIIANGL 78

Query: 73  ----DGSEPCPPQFLD-----VSDNFTYWHPLNRILMCWIYSSLPQKKMGEII------- 132
               DGS PCPP+F D     V+  +  W   NR++M WIY+SL Q  MG+I+       
Sbjct: 79  EDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFE 138

Query: 133 -----------------------------------------KEITYQFAAIGEPISYRDH 192
                                                    K I    AA+GEP+S +DH
Sbjct: 139 IWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDH 198

Query: 193 LGHILDDLRVEYNAFVTSIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITS 218
           L ++   L  EYNAFVTSI  + D   LE+I SLLL YE RLE      QL+  QA++  
Sbjct: 199 LLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAH 258

[Close]

BLAST of ClCG02G013860 vs. NCBI nr
Match: CAN63649.1 (hypothetical protein VITISV_037657 [Vitis vinifera])

HSP 1 Score: 118.2 bits (295), Expect = 8.7e-23
Identity = 65/174 (37.36%), Postives = 106/174 (60.92%), Query Frame = 0


Query: 36  PTLPQPLSTKLNDTNYLSLKTQLMNAVIVN------DGSEPCPPQFLDVSDN----FTYW 95
           P+L Q  + +L+ +NYL  +TQ++N +I N       G    P +FL  S+N    ++ W
Sbjct: 23  PSLNQAFTVRLDQSNYLLWRTQMLNIIIANGLEEMIHGKIXAPSRFLGDSENINPEYSIW 82

Query: 96  HPLNRILMCWIYSSLPQKKMGEIIKEITYQFAAIGEPISYRDHLGHILDDLRVEYNAFVT 155
              NR++MCWIYSSL +  +            AIGE I+ +D + ++L  LR EYN+FV 
Sbjct: 83  QRQNRLVMCWIYSSLTEDNL-----------LAIGENITEQDRILYLLAGLRAEYNSFVI 142

Query: 156 SIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITSLSIQQNNKKSQ 200
           ++ ++ +  +LE+I S+LL +E RLE+    ++ NL QA+IT+++IQ +NKK+Q
Sbjct: 143 TVTSRHEPLSLEEIHSMLLTHENRLEQQHTTEETNLLQANITTMNIQGHNKKNQ 185

[Close]

BLAST of ClCG02G013860 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-22
Identity = 79/235 (33.62%), Postives = 111/235 (47.23%), Query Frame = 0


Query: 3   PPQPLYQQYPQYQPPN-FPQFLPRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNA 62
           PP P     P    PN  PQ L   P P      P++ QPL+ KL+D NY+  K QL+N 
Sbjct: 15  PPPPTSNPLPSSSIPNPNPQILNTSPLPN----MPSINQPLAVKLDDHNYIIWKEQLLNI 74

Query: 63  VIVN------DGSEPCPPQFLD-----VSDNFTYWHPLNRILMCWIYSSLPQKKMGEII- 122
           VI N      DGS  CPP+FLD      +  F  W   NR++M WIY+S+ +  +G+I+ 
Sbjct: 75  VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 134

Query: 123 -----------------------------------------------KEITYQFAAIGEP 178
                                                          + +    A+IGEP
Sbjct: 135 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 194

[Close]

BLAST of ClCG02G013860 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-20
Identity = 80/253 (31.62%), Postives = 115/253 (45.45%), Query Frame = 0


Query: 24  PRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNAVIVN------DGSEPCPPQFLD 83
           P P         P+L Q LS KL++TN L  K+QL+N +I N      D  +  PP++LD
Sbjct: 22  PAPQITQMTLPSPSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLD 81

Query: 84  -----VSDNFTYWHPLNRILMCWIYSSLPQKKMGEII----------------------- 143
                V+  F  W  LN+++M WIYSSL    +G+I+                       
Sbjct: 82  AACRQVNPEFVQWDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIAT 141

Query: 144 -------------------------KEITYQFAAIGEPISYRDHLGHILDDLRVEYNAFV 203
                                    K +  +FA IGEP+SYRD L  IL+ L  EY+ FV
Sbjct: 142 VMSLNSQLQRIKKIDIPLSEYLSRLKFVFDEFATIGEPLSYRDKLTRILEGLPEEYDNFV 201

Query: 204 TSIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITSLSIQQNNKKSQPKFPP 218
           TSI N+SD P+L+++ SLL  YE RL + ++   LN  QA+             QP +  
Sbjct: 202 TSIHNRSDRPSLQEVHSLLHTYEYRLSQRSMDQNLNFPQAN-----------PRQPGYNN 261

[Close]

BLAST of ClCG02G013860 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 124/261 (47.51%), Postives = 153/261 (58.62%), Query Frame = 0


Query: 16  PPNFPQFLPRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNAVIVN------DGSE 75
           PP  P FL +PP P  A  FPTLPQPL+ KLND N+L  K QL+NAVI N      DG+ 
Sbjct: 4   PPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYLDGTI 63

Query: 76  PCPPQFLD---VSDNFTY--WHPLNRILMCWIYSSLPQKKMGEI---------------- 135
             PPQFLD   +  N  Y  W   NR+LMCWIYSSL ++KMGE+                
Sbjct: 64  MPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSSLTRV 123

Query: 136 --------------------------------IKEITYQFAAIGEPISYRDHLGHILDDL 195
                                           IKEI  +FAA+GEP+SYRDHL H+LD L
Sbjct: 124 YDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYRDHLAHVLDGL 183

Query: 196 RVEYNAFVTSIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITSLSIQQNNK 216
             EYNAFVTSI N++D+P+LED+RSLLL YEARL+K   VDQLN+AQA++ +LS+Q N+K
Sbjct: 184 GSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQANLVNLSLQHNSK 243

[Close]

BLAST of ClCG02G013860 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 96/280 (34.29%), Postives = 126/280 (45.00%), Query Frame = 0


Query: 13  QYQPPNFPQFL-----PRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNAVIVN-- 72
           Q  P N P         +PP P   P+ P++ QP + KL+  NYL  K QL+N +I N  
Sbjct: 19  QMPPTNIPNVQDQIIGAQPPLPPL-PILPSMNQPFTIKLDADNYLIWKNQLLNVIIANGL 78

Query: 73  ----DGSEPCPPQFLD-----VSDNFTYWHPLNRILMCWIYSSLPQKKMGEII------- 132
               DGS PCPP+F D     V+  +  W   NR++M WIY+SL Q  MG+I+       
Sbjct: 79  EDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIVGYASAFE 138

Query: 133 -----------------------------------------KEITYQFAAIGEPISYRDH 192
                                                    K I    AA+GEP+S +DH
Sbjct: 139 IWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVGEPVSCKDH 198

Query: 193 LGHILDDLRVEYNAFVTSIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITS 218
           L ++   L  EYNAFVTSI  + D   LE+I SLLL YE RLE      QL+  QA++  
Sbjct: 199 LLYLFGGLDREYNAFVTSITKRPDNLPLEEIYSLLLSYEFRLESQNASAQLSSLQANLAH 258

[Close]

BLAST of ClCG02G013860 vs. ExPASy TrEMBL
Match: A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 78/250 (31.20%), Postives = 116/250 (46.40%), Query Frame = 0


Query: 29  PGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNAVIVN------DGSEPCPPQF-----LD 88
           P   P F +  Q +S KL+DTNYL  + Q+ N +I N      DG+  C  QF       
Sbjct: 48  PSLPPNFSSFNQTISVKLDDTNYLVWRMQMQNIIIANGLEGYIDGTVACSAQFPNSTSSQ 107

Query: 89  VSDNFTYWHPLNRILMCWIYSSLPQKKMGEII---------------------------- 148
           V   FT WH  N++LM W+Y+SL    +G+I+                            
Sbjct: 108 VDPAFTTWHRYNQLLMSWLYASLSDSMLGQIVGFTTATEIWVSLERTYSATSFARSFDFR 167

Query: 149 --------------------KEITYQFAAIGEPISYRDHLGHILDDLRVEYNAFVTSIQN 208
                               K +    A++G+PIS ++HL ++L+ L +EYNAFVT I  
Sbjct: 168 MALQNLKKDRLNASAYLQKLKTLCNTLASVGDPISSQEHLTYLLNGLGLEYNAFVTPILA 227

Query: 209 QSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITSLSIQQNNKKSQPKFPPNFPQF 220
           +   PT+E++ +LLL YEARLE+       +  QA+  +LS  +   KS  + P + P+F
Sbjct: 228 RPVKPTIEEVHALLLSYEARLERQNAAASPSSLQANFANLSFPKQRPKSSSQQPSSQPRF 287

[Close]

BLAST of ClCG02G013860 vs. ExPASy TrEMBL
Match: A5BMF5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037657 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 65/174 (37.36%), Postives = 106/174 (60.92%), Query Frame = 0


Query: 36  PTLPQPLSTKLNDTNYLSLKTQLMNAVIVN------DGSEPCPPQFLDVSDN----FTYW 95
           P+L Q  + +L+ +NYL  +TQ++N +I N       G    P +FL  S+N    ++ W
Sbjct: 23  PSLNQAFTVRLDQSNYLLWRTQMLNIIIANGLEEMIHGKIXAPSRFLGDSENINPEYSIW 82

Query: 96  HPLNRILMCWIYSSLPQKKMGEIIKEITYQFAAIGEPISYRDHLGHILDDLRVEYNAFVT 155
              NR++MCWIYSSL +  +            AIGE I+ +D + ++L  LR EYN+FV 
Sbjct: 83  QRQNRLVMCWIYSSLTEDNL-----------LAIGENITEQDRILYLLAGLRAEYNSFVI 142

Query: 156 SIQNQSDTPTLEDIRSLLLRYEARLEKHTLVDQLNLAQAHITSLSIQQNNKKSQ 200
           ++ ++ +  +LE+I S+LL +E RLE+    ++ NL QA+IT+++IQ +NKK+Q
Sbjct: 143 TVTSRHEPLSLEEIHSMLLTHENRLEQQHTTEETNLLQANITTMNIQGHNKKNQ 185

[Close]

BLAST of ClCG02G013860 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 79/235 (33.62%), Postives = 111/235 (47.23%), Query Frame = 0


Query: 3   PPQPLYQQYPQYQPPN-FPQFLPRPPYPGFAPMFPTLPQPLSTKLNDTNYLSLKTQLMNA 62
           PP P     P    PN  PQ L   P P      P++ QPL+ KL+D NY+  K QL+N 
Sbjct: 15  PPPPTSNPLPSSSIPNPNPQILNTSPLPN----MPSINQPLAVKLDDHNYIIWKEQLLNI 74

Query: 63  VIVN------DGSEPCPPQFLD-----VSDNFTYWHPLNRILMCWIYSSLPQKKMGEII- 122
           VI N      DGS  CPP+FLD      +  F  W   NR++M WIY+S+ +  +G+I+ 
Sbjct: 75  VIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESMLGQIVG 134

Query: 123 -----------------------------------------------KEITYQFAAIGEP 178
                                                          + +    A+IGEP
Sbjct: 135 YTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLASIGEP 194

The following BLAST results are available for this feature:

BLAST of ClCG02G013860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	2.4e-49	47.51	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
PON47862.1	2.1e-24	34.29	hypothetical protein TorRG33x02_321990 [Trema orientale]	[more]
CAN63649.1	8.7e-23	37.36	hypothetical protein VITISV_037657 [Vitis vinifera]	[more]
GFY85402.1	3.3e-22	33.62	hypothetical protein Acr_04g0001400 [Actinidia rufa]	[more]
RVW69807.1	1.4e-20	31.62	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of ClCG02G013860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G013860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	1.2e-49	47.51	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A2P5BGF8	1.0e-24	34.29	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV...	[more]
A0A803NL56	5.0e-24	31.20	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A5BMF5	4.2e-23	37.36	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_037657 PE=4 SV=1	[more]
A0A7J0EGI5	1.6e-22	33.62	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1	[more]

BLAST of ClCG02G013860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 109..171 e-value: 4.1E-7 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G013860.1	ClCG02G013860.1	mRNA