|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGGGAGCTAAAAAAAATGATCAATCTGTGGCTCAGCACAAAGGCTACGGAAAGGCTCCTACAGACCCACAAAGAAAAACGGTCATAGAAAAGGAAGCTTTTCTAGTAACAGGCTTCCATAGAAAAGGGGACCCATCAGCTCAGAGAAAAGGTGGAGTTTCTGAAATGGGTGTTTTTAGAAAATTTGGTCATCTTTTTTCGCGGAGTGAGAAGTGGACAGGTCGTAGGGGTTTGAATGAAGAAAGAAAAGTCCAAATAGAGTCGAGAATCGGCGCAAATCGCAGCGATTGA mRNA sequence ATGAAGGGAGCTAAAAAAAATGATCAATCTGTGGCTCAGCACAAAGGCTACGGAAAGGCTCCTACAGACCCACAAAGAAAAACGGTCATAGAAAAGGAAGCTTTTCTAGTAACAGGCTTCCATAGAAAAGGGGACCCATCAGCTCAGAGAAAAGGTGGAGTTTCTGAAATGGGTGTTTTTAGAAAATTTGGTCATCTTTTTTCGCGGAGTGAGAAGTGGACAGGTCGTAGGGGTTTGAATGAAGAAAGAAAAGTCCAAATAGAGTCGAGAATCGGCGCAAATCGCAGCGATTGA Coding sequence (CDS) ATGAAGGGAGCTAAAAAAAATGATCAATCTGTGGCTCAGCACAAAGGCTACGGAAAGGCTCCTACAGACCCACAAAGAAAAACGGTCATAGAAAAGGAAGCTTTTCTAGTAACAGGCTTCCATAGAAAAGGGGACCCATCAGCTCAGAGAAAAGGTGGAGTTTCTGAAATGGGTGTTTTTAGAAAATTTGGTCATCTTTTTTCGCGGAGTGAGAAGTGGACAGGTCGTAGGGGTTTGAATGAAGAAAGAAAAGTCCAAATAGAGTCGAGAATCGGCGCAAATCGCAGCGATTGA Protein sequence MKGAKKNDQSVAQHKGYGKAPTDPQRKTVIEKEAFLVTGFHRKGDPSAQRKGGVSEMGVFRKFGHLFSRSEKWTGRRGLNEERKVQIESRIGANRSD
Homology
BLAST of ClCG02G012960 vs. NCBI nr
Match: KGN62028.1 (hypothetical protein Csa_006660 [Cucumis sativus]) HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04 Identity = 38/90 (42.22%), Postives = 45/90 (50.00%), Query Frame = 0
Query: 1 MKGAK--KNDQSVAQHKGYGKAPTDPQRKTVIEKEAFLVTGFHRKGDPSAQRKGGVSEMG 60
MKGAK + DQSVAQH+GYGKA TDPQRK
Sbjct: 1 MKGAKMEETDQSVAQHRGYGKAATDPQRKN------------------------------ 52
Query: 61 VFRKFGHLFSRSEKWTGRRGLNEERKVQIE 89
KFG EKWTGR GLNEE+K++++
Sbjct: 61 --EKFG------EKWTGRWGLNEEKKIKVQ 52
BLAST of ClCG02G012960 vs. ExPASy TrEMBL
Match: A0A0A0LJU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 6.6e-05 Identity = 38/90 (42.22%), Postives = 45/90 (50.00%), Query Frame = 0
Query: 1 MKGAK--KNDQSVAQHKGYGKAPTDPQRKTVIEKEAFLVTGFHRKGDPSAQRKGGVSEMG 60
MKGAK + DQSVAQH+GYGKA TDPQRK
Sbjct: 1 MKGAKMEETDQSVAQHRGYGKAATDPQRKN------------------------------ 52
Query: 61 VFRKFGHLFSRSEKWTGRRGLNEERKVQIE 89
KFG EKWTGR GLNEE+K++++
Sbjct: 61 --EKFG------EKWTGRWGLNEEKKIKVQ 52
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN62028.1 | 1.4e-04 | 42.22 | hypothetical protein Csa_006660 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LJU1 | 6.6e-05 | 42.22 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287100 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..28 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
