ClCG02G012580 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G012580
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr02: 26095156 .. 26095494 (-)
RNA-Seq Expression	ClCG02G012580
Synteny	ClCG02G012580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGTCCTCAACAAAGTTTGCTCTCTTGCTCTTGATGTTGTTCATTGCTTCTGGTATATAAATCAATTTTCATTAATTATATTTATTATTTTTTCCCTTTTCCTAATAGTTTTCTTGTTGTATGACGATTAACAATTAAAATATTTCAGAAACATTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCGGGATCTGAAAAGAAATTTCTCAACAAAGTCTTACCTGAATATTCTGGAGAAGAAAAGACAACTCCTTGA

mRNA sequence

ATGGAGAAGTCCTCAACAAAGTTTGCTCTCTTGCTCTTGATGTTGTTCATTGCTTCTGAAACATTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCGGGATCTGAAAAGAAATTTCTCAACAAAGTCTTACCTGAATATTCTGGAGAAGAAAAGACAACTCCTTGA

Coding sequence (CDS)

ATGGAGAAGTCCTCAACAAAGTTTGCTCTCTTGCTCTTGATGTTGTTCATTGCTTCTGAAACATTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCATGCAAAAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCGGGATCTGAAAAGAAATTTCTCAACAAAGTCTTACCTGAATATTCTGGAGAAGAAAAGACAACTCCTTGA

Protein sequence

MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPGSEKKFLNKVLPEYSGEEKTTP

Homology

[Close]

BLAST of ClCG02G012580 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25
Identity = 62/80 (77.50%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP-G 60
          M KSSTK ALLLLM FI SE +FV++ARNVVNIPC SRIDCSDPWDCDCKLNLCFCHP G
Sbjct: 1  MVKSSTKLALLLLMFFIISE-MFVANARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLNKVLPEYSGEEKTT 80
           EKKFL+   PE+  EEKTT
Sbjct: 61 LEKKFLHNAFPEHLREEKTT 79

[Close]

BLAST of ClCG02G012580 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 9.8e-25
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP-G 60
          M K  TKFAL  LM+FI SE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFCHP G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLNKVLPEYSGEEK 78
           EKKFL+K  PE   E++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

[Close]

BLAST of ClCG02G012580 vs. NCBI nr
Match: RQP00499.1 (hypothetical protein POPTR_015G021450 [Populus trichocarpa])

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-05
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPGS 60
          MEKSS K A   ++L  A+ T   ++ARN +NIPCK+  +C     C C +NLCFCHP  
Sbjct: 1  MEKSSMKMAFFAVLLVFAAGTQLGAEARN-INIPCKTVKNCVPAGHCKCIMNLCFCHPDE 60

Query: 61 E 62
          +
Sbjct: 61 Q 60

[Close]

BLAST of ClCG02G012580 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP 59
          MEK S K   L  +L  A       +ARN +N PC +  DC+DP  C+C++NLCFCHP
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRINLCFCHP 57

[Close]

BLAST of ClCG02G012580 vs. NCBI nr
Match: EOY32073.1 (Uncharacterized protein TCM_039538 [Theobroma cacao])

HSP 1 Score: 54.7 bits (130), Expect = 4.3e-04
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP 59
          M+K S K   L  +L  A       +ARN +N PC +  DC+DP  C+C++NLCFCHP
Sbjct: 1  MDKFSFKLIFLATLLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRMNLCFCHP 57

[Close]

BLAST of ClCG02G012580 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP-G 60
          M KSSTK ALLLLM FI SET FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFCHP G
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLNKVLPEYSGEEKTT 80
           EKKFL+   PE+  EEKTT
Sbjct: 61 LEKKFLHNAFPEHLREEKTT 79

[Close]

BLAST of ClCG02G012580 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP-G 60
          M K  TKFAL  LM+FI SE LFVSDARNVVNIPC+SRIDCSDPWDCDCKLNLCFCHP G
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 SEKKFLNKVLPEYSGEEK 78
           EKKFL+K  PE   E++
Sbjct: 61 LEKKFLHKAFPESLREDR 78

[Close]

BLAST of ClCG02G012580 vs. ExPASy TrEMBL
Match: A0A2N9FRQ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPGS 60
          MEKSS K AL++++L IAS   F  DARNVV IPC++  DC D   CDC  N C C PG 
Sbjct: 1  MEKSSLKLALIVVLLLIASSFQFRVDARNVVVIPCETYNDCRDSAKCDCVHNHCRC-PGE 60

Query: 61 EKKFLNKVLPEY 73
          E+ F  K +  +
Sbjct: 61 EQDFFTKAITNH 71

[Close]

BLAST of ClCG02G012580 vs. ExPASy TrEMBL
Match: A0A3N7HLC3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G021450 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHPGS 60
          MEKSS K A   ++L  A+ T   ++ARN +NIPCK+  +C     C C +NLCFCHP  
Sbjct: 1  MEKSSMKMAFFAVLLVFAAGTQLGAEARN-INIPCKTVKNCVPAGHCKCIMNLCFCHPDE 60

Query: 61 E 62
          +
Sbjct: 61 Q 60

[Close]

BLAST of ClCG02G012580 vs. ExPASy TrEMBL
Match: A0A061GY75 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-05
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1  MEKSSTKFALLLLMLFIASETLFVSDARNVVNIPCKSRIDCSDPWDCDCKLNLCFCHP 59
          MEK S K   L  +L  A       +ARN +N PC +  DC+DP  C+C++NLCFCHP
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGVEARN-INTPCNTVKDCADPIKCECRINLCFCHP 57

The following BLAST results are available for this feature:

BLAST of ClCG02G012580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651915.1	2.6e-25	77.50	hypothetical protein Csa_006059 [Cucumis sativus]	[more]
KGN61957.1	9.8e-25	75.64	hypothetical protein Csa_006779 [Cucumis sativus]	[more]
RQP00499.1	5.1e-05	45.90	hypothetical protein POPTR_015G021450 [Populus trichocarpa]	[more]
EOY32074.1	1.9e-04	46.55	Uncharacterized protein TCM_039540 [Theobroma cacao]	[more]
EOY32073.1	4.3e-04	44.83	Uncharacterized protein TCM_039538 [Theobroma cacao]	[more]

BLAST of ClCG02G012580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G012580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJR0	1.1e-26	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1	[more]
A0A0A0LMG3	4.8e-25	75.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1	[more]
A0A2N9FRQ0	1.8e-08	50.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1	[more]
A0A3N7HLC3	2.5e-05	45.90	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G021450 PE=4 ...	[more]
A0A061GY75	9.3e-05	46.55	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039540 PE=4 SV=1	[more]

BLAST of ClCG02G012580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G012580.1	ClCG02G012580.1	mRNA