ClCG02G010950 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G010950
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 22670822 .. 22672247 (-)
RNA-Seq ExpressionClCG02G010950
SyntenyClCG02G010950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACGAAGTTGCACTAGCATTTTGGAGATGGAACGAAGTTGCACTAGCATTTTGGAGATGGAGCGAAGCTGCATCAACATTTTAGAGATGAAATTGTAGTTGCATCAGCATTTTCGAGATTGAACGAAGCTGCACCAACATTTTAGAGATGACGTGAAGTTGTACTGACATTTTGGAGATGGAACGAAGTTGCACTAGCATTTTGGAAATGGAACAAAGTTGCACCAACATTTTGGAGATGGCGTGAAGCTGTACCAACAATTTGGAGATGGAAGCAAAGCTACATTAGCATTTTGGAGAGAAGTAGAGCTGCATCAGCGTTTTGGAAAGGCATCAATATTTTTGGAGATGGAATGAAGTTGCACTAGTAGTTTAGAGATGAAACGAAGCTACACCAATATTTTAAAGATGACGCAAAGCCACACTAACATTTTAGAAATGGTGTGAACTTATCCACAAATTGGAGATGGAGCAAAATTGCACAAACATTTTAGAGATGGAATGAAGCTACACAAGCATTCTAGAGATGGAGCAAAGCTGCATCAGAATTTTGGAGATGGAGCGAAGCGGCAACAACATTTTTGGAGACGGAGTGAAGTTGCACCAACACTTTAGAGATAGAATGAAGTTGCACGTACATTTTAAAAATGAATTGAAGTCACACCAACATTTTGGAGATGACATGAAGTTGTACCAACATTTTGGAGATTAAGCGAAACTGTACCAACATTTTTAGAGATGAAACGATGCTGCACGAGCATTCTGGAGATAGAGCGAAGCTGCATTAACATTTTGAAGATGGAGCGAAGCAACATCAATATTTTTGGGAGGTAGCGAAACTGCACCTACATTTTGGAGAGGAGACGAAGTTGCACAAACATTTTGAAGATGAAGCGAAGCTACGCCAACATTTTAGAGAGAAGTAAGCAGCATTAGCATTTTGGAGAGGAGTAGAGCTGCACCAACATTTCAGAGATGAAGCGAAGCTACACTAAACTTTTGGAGGGGAGTGAAGCTGCACCAACATTTTGGAGAGAGAGTGAACCAAAATTTGGAGAGAGAGTGAAGCGACACTAGCATTTTGGAGAGGAGTAGAGCTGCACCAACATTTTGGATGAAGTGAAGCTACACAAAACTTTTGGAGGGGAAGCAGTGAAGTGCCATTCCAAGCGAGCAAAGCTCCAAAGTTGAAGATGGAATATCGAACTTTAGGCGAGCAATGCCTTGAACTTGAGCCAAACAATGCCCACTTGAAGCTTCTTTCTTTATGTGAACAAATAGAAGTTCAAGTTTTTTTAGCAAAGATCCTTTTTTATGCATCCAACTTGTACAGTCTCATGCCAAGCAATGTGTGCCTTCAGTTTACTGTGTTACCTTCTTACGAGGGATGAACATCTTTAATTGGTTCTGTTGCCCCCAGTAG

mRNA sequence

ATGGAACGAAGTTGCACTAGCATTTTGGAGATGGAACGAAGTTGCACTAGCATTTTGGAGATGGAGCGAAGCTGCATCAACATTTTAGAGATGAAATTATGGAACGAAGTTGCACTAGCATTTTGGAAATGGAACAAAGTTGCACCAACATTTTGGAGATGGCGTGAAGCTGTACCAACAATTTGGAGATGGAAGCAAAGCTACATTAGCATTTTGGAGAGAAGTAGAGCTGCATCAGCGTTTTGGAAAGGCATCAATATTTTTGGAGATGGAATGAAAGATGGAATGAAGCTACACAAGCATTCTAGAGATGGAGCAAAGCTGCATCAGAATTTTGGAGATGGAGCGAAGCGGCAACAACATTTTTGGAGACGGATTGTACCAACATTTTGGAGATTAAGCGAAACTGTACCAACATTTTTAGAGATGAAACGATGCTGCACGAGCATTCTGGAGATAGAGCGAAGCTGCATTAACATTTTGAAGATGGAGCGAAGCAACATCAATATTTTTGGGAGCTGCACCAACATTTCAGAGATGAAGCGAAGCTACACTAAACTTTTGGAGGGGAGTGAAGCTGCACCAACATTTTGGAGAGAGATGCCATTCCAAGCGAGCAAAGCTCCAAAGTTGAAGATGGAATATCGAACTTTAGGCGAGCAATGCCTTGAACTTGAGCCAAACAATGCCCACTTGAAGCTTCTTTCTTTATGTGAACAAATAGAAGTTCAATCTCATGCCAAGCAATGTGTGCCTTCAGTTTACTGTGTTACCTTCTTACGAGGGATGAACATCTTTAATTGGTTCTGTTGCCCCCAGTAG

Coding sequence (CDS)

ATGGAACGAAGTTGCACTAGCATTTTGGAGATGGAACGAAGTTGCACTAGCATTTTGGAGATGGAGCGAAGCTGCATCAACATTTTAGAGATGAAATTATGGAACGAAGTTGCACTAGCATTTTGGAAATGGAACAAAGTTGCACCAACATTTTGGAGATGGCGTGAAGCTGTACCAACAATTTGGAGATGGAAGCAAAGCTACATTAGCATTTTGGAGAGAAGTAGAGCTGCATCAGCGTTTTGGAAAGGCATCAATATTTTTGGAGATGGAATGAAAGATGGAATGAAGCTACACAAGCATTCTAGAGATGGAGCAAAGCTGCATCAGAATTTTGGAGATGGAGCGAAGCGGCAACAACATTTTTGGAGACGGATTGTACCAACATTTTGGAGATTAAGCGAAACTGTACCAACATTTTTAGAGATGAAACGATGCTGCACGAGCATTCTGGAGATAGAGCGAAGCTGCATTAACATTTTGAAGATGGAGCGAAGCAACATCAATATTTTTGGGAGCTGCACCAACATTTCAGAGATGAAGCGAAGCTACACTAAACTTTTGGAGGGGAGTGAAGCTGCACCAACATTTTGGAGAGAGATGCCATTCCAAGCGAGCAAAGCTCCAAAGTTGAAGATGGAATATCGAACTTTAGGCGAGCAATGCCTTGAACTTGAGCCAAACAATGCCCACTTGAAGCTTCTTTCTTTATGTGAACAAATAGAAGTTCAATCTCATGCCAAGCAATGTGTGCCTTCAGTTTACTGTGTTACCTTCTTACGAGGGATGAACATCTTTAATTGGTTCTGTTGCCCCCAGTAG

Protein sequence

MERSCTSILEMERSCTSILEMERSCINILEMKLWNEVALAFWKWNKVAPTFWRWREAVPTIWRWKQSYISILERSRAASAFWKGINIFGDGMKDGMKLHKHSRDGAKLHQNFGDGAKRQQHFWRRIVPTFWRLSETVPTFLEMKRCCTSILEIERSCINILKMERSNINIFGSCTNISEMKRSYTKLLEGSEAAPTFWREMPFQASKAPKLKMEYRTLGEQCLELEPNNAHLKLLSLCEQIEVQSHAKQCVPSVYCVTFLRGMNIFNWFCCPQ
Homology
[Close]
BLAST of ClCG02G010950 vs. NCBI nr
Match: GCB81547.1 (hypothetical protein [Scyliorhinus torazame])

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-05
Identity = 56/192 (29.17%), Postives = 94/192 (48.96%), Query Frame = 0 

Query: 1   MERSCTSILEMERSCTSILEMERSCINILEMKLWNEVALAFWKWNKVAPTFWRWREAVPT 60
           ME+   SILEME+   SILEM +  ++I EM+   + +L+  +  K +       + + +
Sbjct: 29  MEKESMSILEMEKRSMSILEMAKGSMSIFEME---KGSLSILEMEKGSMPILEIEKGLMS 88

Query: 61  IWRWKQSYISILERSRAASAFWKGINIFGDGMKDGMKLHKHSRDGAKLHQNFGDGAKRQQ 120
           I+  ++  I+ILE         KG+++    ++DG  +  HSRDG  ++ +FG+G     
Sbjct: 89  IFEMEKRRITILEPE-------KGVSVH---LRDGEGIIIHSRDGEAINVHFGNGEGTNV 148

Query: 121 HFWRRIVPTFWRLSETVPTFLEMKRCCTSILEIERSCINILKMERSNINIF---GSCTNI 180
           H           + +   T L M++   SILE+E   + I +ME   I IF      T I
Sbjct: 149 HL---------EMEKGRMTILGMEKGSVSILEMENGSMPIEEMEMGPIPIFEMEKESTTI 198

Query: 181 SEMKRSYTKLLE 190
            EM++    +LE
Sbjct: 209 LEMEKERMTILE 198

[Close]
BLAST of ClCG02G010950 vs. ExPASy TrEMBL
Match: A0A401Q8A0 (Uncharacterized protein OS=Scyliorhinus torazame OX=75743 GN=scyTo_0021854 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 56/192 (29.17%), Postives = 94/192 (48.96%), Query Frame = 0 

Query: 1   MERSCTSILEMERSCTSILEMERSCINILEMKLWNEVALAFWKWNKVAPTFWRWREAVPT 60
           ME+   SILEME+   SILEM +  ++I EM+   + +L+  +  K +       + + +
Sbjct: 29  MEKESMSILEMEKRSMSILEMAKGSMSIFEME---KGSLSILEMEKGSMPILEIEKGLMS 88

Query: 61  IWRWKQSYISILERSRAASAFWKGINIFGDGMKDGMKLHKHSRDGAKLHQNFGDGAKRQQ 120
           I+  ++  I+ILE         KG+++    ++DG  +  HSRDG  ++ +FG+G     
Sbjct: 89  IFEMEKRRITILEPE-------KGVSVH---LRDGEGIIIHSRDGEAINVHFGNGEGTNV 148

Query: 121 HFWRRIVPTFWRLSETVPTFLEMKRCCTSILEIERSCINILKMERSNINIF---GSCTNI 180
           H           + +   T L M++   SILE+E   + I +ME   I IF      T I
Sbjct: 149 HL---------EMEKGRMTILGMEKGSVSILEMENGSMPIEEMEMGPIPIFEMEKESTTI 198

Query: 181 SEMKRSYTKLLE 190
            EM++    +LE
Sbjct: 209 LEMEKERMTILE 198

The following BLAST results are available for this feature:
BLAST of ClCG02G010950 vs. NCBI nr
Match NameE-valueIdentityDescription
GCB81547.12.7e-0529.17hypothetical protein [Scyliorhinus torazame][more]
BLAST of ClCG02G010950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG02G010950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A401Q8A01.3e-0529.17Uncharacterized protein OS=Scyliorhinus torazame OX=75743 GN=scyTo_0021854 PE=4 ... [more]
BLAST of ClCG02G010950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G010950.1ClCG02G010950.1mRNA