Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCCTTTCTTTCTCTGCTTCGATTTCTTTTTCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTAAATTTGGCTAGCAGTAATCAAATATACAGTTTCAGTTTTTTTTTTTTTTTTTAATTTATCATAATTCAAAGTCATATAAATAACTCTGCTTCTCTAATGATAAGGATTAGCAAAATTATACATTTGAACTTCTTTTATATATGAGTATGTGCAATTCTTTTGAAAATTTTAGGACAAATTCGAATTGGGTCATTGTTCTTTCTTTCTTTCCTATCTCCGATGAGGTTGTTTTTGTAAAATGGCAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAAGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA
mRNA sequence
CTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCCTTTCTTTCTCTGCTTCGATTTCTTTTTCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAAGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA
Coding sequence (CDS)
ATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAAGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA
Protein sequence
MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEEESKPAEGEAPAEEEAVEEKPKEETEEKAEEEPAAEKAE
Homology
BLAST of ClCG02G009500 vs. NCBI nr
Match:
XP_038900947.1 (cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benincasa hispida])
HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36
Identity = 124/142 (87.32%), Postives = 125/142 (88.03%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEE 60
MATAEVV PET LPEEATEVVEVPPPKVEEEEAPPP A DPPAEEV KEEE TDPPA EE
Sbjct: 1 MATAEVVPPETVLPEEATEVVEVPPPKVEEEEAPPPAAVDPPAEEVAKEEEATDPPAAEE 60
Query: 61 TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEEESKPAEGEAPAEEEA---V 120
TETPVEVETKEVVVEEEPKEEKK EEEE+EEE EAVVEEESKPAE EAPAEEEA V
Sbjct: 61 TETPVEVETKEVVVEEEPKEEKK--EEEEKEEEAGEAVVEEESKPAEAEAPAEEEAVEVV 120
Query: 121 EEKPKEETEEKAEEEPAAEKAE 140
EEKP EETEEK EEEPAAEKAE
Sbjct: 121 EEKPVEETEEKPEEEPAAEKAE 140
BLAST of ClCG02G009500 vs. NCBI nr
Match:
XP_004140479.1 (cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothetical protein Csa_004785 [Cucumis sativus])
HSP 1 Score: 126.7 bits (317), Expect = 1.5e-25
Identity = 114/149 (76.51%), Postives = 118/149 (79.19%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
MATAEVVTPETALPEEATEV VEVPPPKVEEEEAPPPV DPPAEEV KEE+ TDPPA
Sbjct: 1 MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
Query: 61 EETETPVEVETKEVVVEEEPKEEKKEEEE--EEEEEEE------AEAVVEEESKPAEGEA 120
EE ETPVEVETKEVVVEEE KEEK EEEE EEEE+EE AE VVEEE+K E
Sbjct: 61 EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 120
Query: 121 PAEEEAVEEKPKEETEEKAEEEPAAEKAE 140
AEE+AVE KP EE EEKAEEE AEK E
Sbjct: 121 -AEEKAVEVKPAEEAEEKAEEEVGAEKVE 147
BLAST of ClCG02G009500 vs. NCBI nr
Match:
XP_008455963.1 (PREDICTED: patellin-1-like [Cucumis melo])
HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
MATAEVVTP+TA+PEEATEV VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA
Sbjct: 1 MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60
Query: 61 EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
EETETPVE ETKEVVVEEE KEEK EEE EEEE+E AE V EE+K +E E P
Sbjct: 61 EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120
Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
EE E VEEKP EETEEK EEE AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155
BLAST of ClCG02G009500 vs. NCBI nr
Match:
KAA0053292.1 (patellin-1-like [Cucumis melo var. makuwa])
HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
MATAEVVTP+TA+PEEATEV VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA
Sbjct: 1 MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60
Query: 61 EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
EETETPVE ETKEVVVEEE KEEK EEE EEEE+E AE V EE+K +E E P
Sbjct: 61 EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120
Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
EE E VEEKP EETEEK EEE AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155
BLAST of ClCG02G009500 vs. NCBI nr
Match:
XP_022971120.1 (fibrous sheath CABYR-binding protein-like [Cucurbita maxima])
HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 93/162 (57.41%), Postives = 100/162 (61.73%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEE 60
MATAEVVT E AL EE TE VEVPP KVEEE P AADPPAEEV KEE A E
Sbjct: 1 MATAEVVTQEPALQEEVTE-VEVPPLKVEEE---APAAADPPAEEVAKEE------AAEV 60
Query: 61 TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEE------ESKPA-------- 120
E PVEVETKEVV +EE +E K+E EE++E E AE EE ES+PA
Sbjct: 61 AEPPVEVETKEVVAKEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAEEEEEE 120
Query: 121 ------EGEAPAEEEA--VEEKPKEETEEK-AEEEPAAEKAE 140
E E AEEEA V+E EE EEK AEEEPAAEKAE
Sbjct: 121 EEEAKPEAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152
BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match:
A0A0A0KAS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 114/149 (76.51%), Postives = 118/149 (79.19%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
MATAEVVTPETALPEEATEV VEVPPPKVEEEEAPPPV DPPAEEV KEE+ TDPPA
Sbjct: 1 MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60
Query: 61 EETETPVEVETKEVVVEEEPKEEKKEEEE--EEEEEEE------AEAVVEEESKPAEGEA 120
EE ETPVEVETKEVVVEEE KEEK EEEE EEEE+EE AE VVEEE+K E
Sbjct: 61 EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 120
Query: 121 PAEEEAVEEKPKEETEEKAEEEPAAEKAE 140
AEE+AVE KP EE EEKAEEE AEK E
Sbjct: 121 -AEEKAVEVKPAEEAEEKAEEEVGAEKVE 147
BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match:
A0A5A7UC23 (Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001030 PE=4 SV=1)
HSP 1 Score: 124.0 bits (310), Expect = 4.9e-25
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
MATAEVVTP+TA+PEEATEV VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA
Sbjct: 1 MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60
Query: 61 EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
EETETPVE ETKEVVVEEE KEEK EEE EEEE+E AE V EE+K +E E P
Sbjct: 61 EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120
Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
EE E VEEKP EETEEK EEE AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155
BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match:
A0A1S3C239 (patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1)
HSP 1 Score: 124.0 bits (310), Expect = 4.9e-25
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
MATAEVVTP+TA+PEEATEV VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA
Sbjct: 1 MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60
Query: 61 EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
EETETPVE ETKEVVVEEE KEEK EEE EEEE+E AE V EE+K +E E P
Sbjct: 61 EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120
Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
EE E VEEKP EETEEK EEE AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155
BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match:
A0A6J1I4V1 (fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111469887 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 6.6e-06
Identity = 93/162 (57.41%), Postives = 100/162 (61.73%), Query Frame = 0
Query: 1 MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEE 60
MATAEVVT E AL EE TE VEVPP KVEEE P AADPPAEEV KEE A E
Sbjct: 1 MATAEVVTQEPALQEEVTE-VEVPPLKVEEE---APAAADPPAEEVAKEE------AAEV 60
Query: 61 TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEE------ESKPA-------- 120
E PVEVETKEVV +EE +E K+E EE++E E AE EE ES+PA
Sbjct: 61 AEPPVEVETKEVVAKEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAEEEEEE 120
Query: 121 ------EGEAPAEEEA--VEEKPKEETEEK-AEEEPAAEKAE 140
E E AEEEA V+E EE EEK AEEEPAAEKAE
Sbjct: 121 EEEAKPEAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038900947.1 | 1.5e-36 | 87.32 | cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benin... | [more] |
XP_004140479.1 | 1.5e-25 | 76.51 | cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothe... | [more] |
XP_008455963.1 | 1.0e-24 | 71.61 | PREDICTED: patellin-1-like [Cucumis melo] | [more] |
KAA0053292.1 | 1.0e-24 | 71.61 | patellin-1-like [Cucumis melo var. makuwa] | [more] |
XP_022971120.1 | 1.4e-05 | 57.41 | fibrous sheath CABYR-binding protein-like [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KAS3 | 7.5e-26 | 76.51 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1 | [more] |
A0A5A7UC23 | 4.9e-25 | 71.61 | Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G0010... | [more] |
A0A1S3C239 | 4.9e-25 | 71.61 | patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1 | [more] |
A0A6J1I4V1 | 6.6e-06 | 57.41 | fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
Match Name | E-value | Identity | Description | |