ClCG02G009500 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G009500
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionpatellin-1-like
LocationCG_Chr02: 14444328 .. 14445099 (-)
RNA-Seq ExpressionClCG02G009500
SyntenyClCG02G009500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCCTTTCTTTCTCTGCTTCGATTTCTTTTTCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTAAATTTGGCTAGCAGTAATCAAATATACAGTTTCAGTTTTTTTTTTTTTTTTTAATTTATCATAATTCAAAGTCATATAAATAACTCTGCTTCTCTAATGATAAGGATTAGCAAAATTATACATTTGAACTTCTTTTATATATGAGTATGTGCAATTCTTTTGAAAATTTTAGGACAAATTCGAATTGGGTCATTGTTCTTTCTTTCTTTCCTATCTCCGATGAGGTTGTTTTTGTAAAATGGCAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAAGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA

mRNA sequence

CTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCCTTTCTTTCTCTGCTTCGATTTCTTTTTCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAAGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA

Coding sequence (CDS)

ATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAAGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA

Protein sequence

MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEEESKPAEGEAPAEEEAVEEKPKEETEEKAEEEPAAEKAE
Homology
BLAST of ClCG02G009500 vs. NCBI nr
Match: XP_038900947.1 (cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36
Identity = 124/142 (87.32%), Postives = 125/142 (88.03%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEE 60
           MATAEVV PET LPEEATEVVEVPPPKVEEEEAPPP A DPPAEEV KEEE TDPPA EE
Sbjct: 1   MATAEVVPPETVLPEEATEVVEVPPPKVEEEEAPPPAAVDPPAEEVAKEEEATDPPAAEE 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEEESKPAEGEAPAEEEA---V 120
           TETPVEVETKEVVVEEEPKEEKK  EEEE+EEE  EAVVEEESKPAE EAPAEEEA   V
Sbjct: 61  TETPVEVETKEVVVEEEPKEEKK--EEEEKEEEAGEAVVEEESKPAEAEAPAEEEAVEVV 120

Query: 121 EEKPKEETEEKAEEEPAAEKAE 140
           EEKP EETEEK EEEPAAEKAE
Sbjct: 121 EEKPVEETEEKPEEEPAAEKAE 140

BLAST of ClCG02G009500 vs. NCBI nr
Match: XP_004140479.1 (cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothetical protein Csa_004785 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-25
Identity = 114/149 (76.51%), Postives = 118/149 (79.19%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
           MATAEVVTPETALPEEATEV  VEVPPPKVEEEEAPPPV  DPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEE--EEEEEEE------AEAVVEEESKPAEGEA 120
           EE ETPVEVETKEVVVEEE KEEK EEEE  EEEE+EE      AE VVEEE+K    E 
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 120

Query: 121 PAEEEAVEEKPKEETEEKAEEEPAAEKAE 140
            AEE+AVE KP EE EEKAEEE  AEK E
Sbjct: 121 -AEEKAVEVKPAEEAEEKAEEEVGAEKVE 147

BLAST of ClCG02G009500 vs. NCBI nr
Match: XP_008455963.1 (PREDICTED: patellin-1-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+E       AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of ClCG02G009500 vs. NCBI nr
Match: KAA0053292.1 (patellin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+E       AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of ClCG02G009500 vs. NCBI nr
Match: XP_022971120.1 (fibrous sheath CABYR-binding protein-like [Cucurbita maxima])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-05
Identity = 93/162 (57.41%), Postives = 100/162 (61.73%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEE 60
           MATAEVVT E AL EE TE VEVPP KVEEE    P AADPPAEEV KEE      A E 
Sbjct: 1   MATAEVVTQEPALQEEVTE-VEVPPLKVEEE---APAAADPPAEEVAKEE------AAEV 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEE------ESKPA-------- 120
            E PVEVETKEVV +EE +E K+E  EE++E E AE   EE      ES+PA        
Sbjct: 61  AEPPVEVETKEVVAKEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAEEEEEE 120

Query: 121 ------EGEAPAEEEA--VEEKPKEETEEK-AEEEPAAEKAE 140
                 E E  AEEEA  V+E   EE EEK AEEEPAAEKAE
Sbjct: 121 EEEAKPEAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152

BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match: A0A0A0KAS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 114/149 (76.51%), Postives = 118/149 (79.19%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
           MATAEVVTPETALPEEATEV  VEVPPPKVEEEEAPPPV  DPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEE--EEEEEEE------AEAVVEEESKPAEGEA 120
           EE ETPVEVETKEVVVEEE KEEK EEEE  EEEE+EE      AE VVEEE+K    E 
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 120

Query: 121 PAEEEAVEEKPKEETEEKAEEEPAAEKAE 140
            AEE+AVE KP EE EEKAEEE  AEK E
Sbjct: 121 -AEEKAVEVKPAEEAEEKAEEEVGAEKVE 147

BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match: A0A5A7UC23 (Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001030 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.9e-25
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+E       AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match: A0A1S3C239 (patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.9e-25
Identity = 111/155 (71.61%), Postives = 117/155 (75.48%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEE-------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+E       AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 140
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of ClCG02G009500 vs. ExPASy TrEMBL
Match: A0A6J1I4V1 (fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111469887 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-06
Identity = 93/162 (57.41%), Postives = 100/162 (61.73%), Query Frame = 0

Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPPAEEVEKEEETTDPPAPEE 60
           MATAEVVT E AL EE TE VEVPP KVEEE    P AADPPAEEV KEE      A E 
Sbjct: 1   MATAEVVTQEPALQEEVTE-VEVPPLKVEEE---APAAADPPAEEVAKEE------AAEV 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEAEAVVEE------ESKPA-------- 120
            E PVEVETKEVV +EE +E K+E  EE++E E AE   EE      ES+PA        
Sbjct: 61  AEPPVEVETKEVVAKEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAEEEEEE 120

Query: 121 ------EGEAPAEEEA--VEEKPKEETEEK-AEEEPAAEKAE 140
                 E E  AEEEA  V+E   EE EEK AEEEPAAEKAE
Sbjct: 121 EEEAKPEAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038900947.11.5e-3687.32cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benin... [more]
XP_004140479.11.5e-2576.51cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothe... [more]
XP_008455963.11.0e-2471.61PREDICTED: patellin-1-like [Cucumis melo][more]
KAA0053292.11.0e-2471.61patellin-1-like [Cucumis melo var. makuwa][more]
XP_022971120.11.4e-0557.41fibrous sheath CABYR-binding protein-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAS37.5e-2676.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1[more]
A0A5A7UC234.9e-2571.61Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G0010... [more]
A0A1S3C2394.9e-2571.61patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1[more]
A0A6J1I4V16.6e-0657.41fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G009500.1ClCG02G009500.1mRNA