ClCG02G007910 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G007910
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	RNA polymerase sigma factor sigA
Location	CG_Chr02: 9651643 .. 9663552 (-)
RNA-Seq Expression	ClCG02G007910
Synteny	ClCG02G007910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGAAGTATAATTAGTCATTCTTCTTTACCAGAATCTCTCTGGGGTAAGGCATTAAAGACTGCAGCATATATCCCCAATAAGATACCTAGTAAAGCGATAGCTAAAACCCCTTATGAGTTGTGGACAGAAAAGACGCCTAGTATTAAGCATCTTTACATCTGGGGTTGTCCAACTGAGGCTAGGCCATACAGGCCTAATGAAAAAAAATTGGACTCAAGAACTATTAGCTACTATTTTGTTGGGTATTCCAAGCGCTCTTAGGGTTTTAAGTTTTATGATCCTACATCTAGATCATTGTTTGAGAAAGGAAATGCAAGATTCTTTGAGGATGTTGAGTTTGCTGGGGAAGATAACATAAGGAAAGTTGTCTTTGAAGAGAAATTAGTTTCTTTTCCTAGTATGATTATAGATGATGCTCAGGCTCCTATTCCTGACTTCACTATTGAACCTTATTGAACAAGACAACACTGTAATCCCCGTTGTTGAACCTGAAGTTCAAACTCAACAACCTCAAGAATTGTCATTAAGGAGATCTACTAAAGAGAGAAGAAGTGCTATTCCAGACGATTATATTGTGTTTCTTTAAGAACATCAAGATGATATTGGTGTGATGGAAGATGATCCAATCAACTTCCAACAAGCACTACAAAGTTCTCATTCTGATAAGTGGATAAATGCTATGGAAGAGAAAATAAAATCCATGAAAGACAATAACGTTTGGAAGCTTGTCGAATTGCCATCAGGAGTGAAACCTATAGGTTGTAAATGGATATTTAAAACCAAAAGGGATTCATAAGGCAAAATCGAAAGATATAAGGCTCGTCTTGTTGCAAAGGGTTCTACTCAAAAGGAAGGCATTGATTACAAAGAGACTTTCTCTCCAGTTTCATCGAAAGACTCTTTCAGGGTAATCATGGCACTTGTAGCTCACTTTGATTTAGAGCTACATCAGATGGATGTAAAAACTGCATTTCTCAATGGAAACATTGATGAGACAATTTATATGGTGCAACAAGAAAACTTTTTGTCTGGTAATTCAAAGTCTATGATGTGCAAATTGAAGAAATCTATCTATGGTCTCAAGCAAGCCTCTCGTCAATGGTATCACAAATTCCATGAAATAATTATCTAATTTGGGTTTGAGGTGAATGTAGTGGAAGATTGTGTATATCACAAGTTTAGTGGGAGTAAATTTATCTTTCTAGTGTTATATGTCAATGACTTACTCATAGTAAGTAACGATGTAAGTTTATTGCATGACACTAAGAAGTTTCTCAAAAAGAATTTTGAGATGAAAGATCTTGGTGATGCTTCTTATGTATTAGGAATTGAAATACTGCGAGATCGTTCTCAAGGTGTTTTGAGATTGTCACAAAAGAACTACATTGAAAAGATTTTGAGTAGATTTGGCATGTGCACTCGGAGATAGCCCTGGCGCTAAAGATGATAAATTTCATTTAGGTTAATGCCCCAAAACCATACTCGAGAGTAAGGAGATGTAGAAGGTTCCTTATGCATCGGCTATTGGAAGCCTAATGTACGCTCAAGTATGTACGCGACCAGATATTGCATTCATAGTTGGAGTGTTAGGTAGATATTTAAGCAACCAGGGATGCATCATTGGAAAGAAGCCAAACGGGTTATGAGATATTTGCAGAGAACAAAAGATTATATGCTCACTTATCAAAGATCATATGTTTTAGAGATCATTGGGTATTCTGATTTCGATTATGTTGGATGTCAAGACACTTTGCGATCCACTTCAGGCTATATCTTCATGTCGACTGGAGGAGCTGTATCTTGGAAAAGTGTTAAACAAACACTTATGGCTTCTTCTACCATGGTTGCAGAGTTTATAGCATGTTATGATGAGGCATCCAATCATGGAATATGGTTGCAAATTTTTGTCACTAGGCTGCGGATAGTGGTAGGTATAGAAATACCACTAAAACTATTTTGTGACAATAAGTCGGCAGTGATGTATTCCAACAACAACAGAAGCAATACAAAGTCATATCACTAATATCATATTGATATTTGTGATATACTGATATCATTGATATCTACTTGAGTCATATCACCAATATCACTAATATCATTGATGTCACTAATATTTACCTAAGTCAAATCACTAATATGGGGATATCACTGATATCTACTAGTTATATCACTAATATCTTCAATTTTAAATGAATTGCTAAATTCATATTTTCACATTTAAATAAGACTTTAGTATATCAGTGGTTATCACAAGTATATTTATATTATTATGTCATAATAATTGAAGTTATCGTTGATAGCTACTAATAAATTTTATAAGTTCTAGACTTTTAGTTTGATCTTAAATATTTACTAATAAATTATTGTACATTAGTTGATATAAGTTTAAGTAATAGACTTATATCACTGATTCAAGTAGTCTATTAGTGATAGAAACATATCACTAATAGACTATGGCTTAGTCTACCGTGATATCATAGGTTATCAATGATAATAGTTTATTATTAATATATTTCATATTTTTAAAGTCCAACAAAAAGAAAAATAAAATAAAAACTATGGGTTCGTTTGTTAATATTTTCGTTTCTCATATTTTGAGAAACAAACTTGTTTGATAAGCATTATTTTGTTTCTTATTTCTAACTTTTAAAAAGCATTTCCAAAAAAATGTGCAAACTCAATAACTAATAAAAGTAGTTTCTTTCAAATCCGTGTTCATTCAGTATTTATATTTAACATTTTGTTTTAAATATAAAGTCTGATAATTGGCTTGTTGGTGTCAACGTATTTTGAAAATGATTATGCACTCTTAAAGCAAACATAGTATTGAATAATTAAACTATAATTAATCTTTTCACATATTAGGCTTCTATTCTTATATTATTTCACAAATCACATATTTAAATCTTTAAAATAAAATTAATTCATAATTAATATGATAAAAAGACAATTAAATTAGAGAAGATAAACATAATGTGAAATAAAAATAATTAAGGAAGGAAATATGGATAATAAACAAAATCTAAATGAAACTTAAATGACAAAAAAATTAATTTTAATGATACTCAAACTTAAAAGAAGGAAAGTGCAATGCACAATTAGGAAAAAATTAACAGGAAAATGGCATAAAATTTTGGCCAAATTGGTAAATTAAAGTGCTAAGAAATGGTGAAGAATTAAGCAATAATGTGCATAAAATTAATTAATTTAAAAATTAAAGGATTCTCATATACCCATTTTAAATCGGTCTTGAATTTTAACTTTTTCTAAGTGAAAATCCAGCCCTAACATTTTAATTAAGAAAAGGAAATAGGGAGAAAATGAGAGTAAACAAATTTCAAAATTAAAAACAATAACTTGAACGTACAACATAAATCTAAAAGAATAATAACAAGATGAAACTAAGACTATTTTATTACGAAAACTATTACCAAACAAAATGGAAATAAACAAATTTAAACTTTCGAAAACATAAAATTGAAACTAAAACAAGACTTGAAATAAGTACTCCTAAAAAAAGAAAAAAAAATTACAAAAAAAGGAGGAAAACTGGAAGAAATAAGTTGTGAATCTAACTAAATCTTACTCAATTCAATTCTTTTCAAGTAGAATCAAGTAATTTACAACCCAAGACTTTCGAATGGGACTAGATCAGCACAAGTACAACCGCTTCGAGCTTCAAGAATAGGCTACAAGTAGTAAAATAAACAAAAACAACGGTGCAGATTTTTTCTGTGGTTTTTGGAGGAAGAACATGGATTCTTGAATGCTTTTGGGAGAGCTTTTGACCCCTTTTATAGAATTCCAATGGCGGTGTCGGTTGTTGAAGATGGGAGGCTCATGGGCTATCTTAATAGCCAAGATTAGAGGAGAGAATCCTTAAATTTCAGCTCCGAAACTGAATCTAGAATTAATTTTCTCTTGTGGCCAATTGTTGTAGCAATATATTTTTCTGGAATGCTATAGCAATTTGGCTCAATGAATTTTCTGAAAAAATACACCAAAATTAAAAAGTTTCTTACCAAATTCATCTCTTTTTTTCACAATTAAGCTTTAAAATGTAATCTATGAATTATTTGTTATTTTAAACTTGATTTTTTTTATGAAAAAAGACTAAATGTATACATTTTTATATCAAAATACTGAAATTTAGTATCTAAATAATTCTAAAAAATGAGAATTATTAATATACTAGTTATTTAATTTAATAATATACTTTAGTTGTTTTAAAAAAATAAATCTCTGATGCACTTTCATTTGTTAATAATTTTTTACATATTCATGAAAAATCGAAAAAGAAATATGTGAAGGACTACAAGAAGGAAAAAAAAAAATGGCAAGCTACACAATAAAAAAAACCAATATCAATGTTACATTTAAAATTGCATTTTGAATAAGTGTTAATTAGAGATGTCCATTTTCCCCACGTAGTCTTGAACGGGGCGGGGATTCCCCGTTTAGGTGGAGAGGGAGTGAGGAAAAAAAATTTCCTGAAAGCTAAATGGGGATGGGGACGGGGTGTGCATTCCCTGCTTCCGTCCCCGCCCTATTAGGCTTTTCTCTTATATTTATTATAGTAATTTAATTTTATGTTATTTATTTTTATTATATAAATATTATATTTAATTTTCAAGATTAATGGTCAAAATAATGAATATATATATTTGAATTATAAATTTAGATTATATATAAAAAAATAATTTGATAGATAATTATTTACTTTAATTTCAAATTTTTGAGTAATTTCTCTTTGAATTTTAATTTTCCAAGTGGAACTGATTAATCATATAAAAGTTAACCATTTAATTAAAACTCTTTCATAATAATGATTCATGGTAATTGATTTTTTTTAAAAAAAAAAATCAAACGGAAAAAAATTCCCCATGGGGAACCTGGTCCCCGCAAATTTCCCGTGGGGAATCCCCATCTCGATCTCGGTGGGAAATTTGGCAGGGACGAGAAATGAAATGGGGAACGGGGAAGGGAATGGGGGAAGCCATCCCAGCCCACGGACATCTCTAATGTTAATTCCTTTGATGATCCACTCCAACTATTATACATAACTTATATGCATATCATTATTGATATAATTCTATTGTTGATTTTCTTTATATTGAATATAATAACATAAATGCATTATTGATATAATACCATACATCTATTGTTGATATATATGATATACTCAATCCTAACTAATGGAGATAGCAATGAATTAAACATACGATATTTTATTAATTCCAAATGGATGTTAAAGGAAAATGTATTAGTGATAATTTGCTTAACTAATATCAATTGTAACTTACATTATTATATAAAAGTATATCACGTATATACTAATGATACACCTAAAACTAAGTATATCAGTACTATAAACCTACCTCATGTATGCTTTTCAAAGCATCCAAAATTTACACAAATTTCTTATTCTTTCATCATAAATCATCTCTCTGTATAAAACAAATTTGCAGTGATGGGTGAATAAACTAAGATAATCAACAACAACAACAATTAGAAATTATTACATTATATTGGCAGTATATACACTATATAAGTATATTAATTAATTGATGTGCCTAAAATACACCAATAACATATCGATAGTATATTAGATATATCAAGCAATATACTGTCTCTTGAAAACATATAGTTGTTCGTTTTTAATACATTTAAAAGGGACAAAACTACTAAAGGGATAGAAAAGTAAAGTGGTTGTTTTAAAATATATCAAATTAACTAAACTATTTGTCTCCCGTAGATTTGGTTCAATTCAAAGCACAGCCGTTGATCAAATTTGATGGAATTGGTTTCCCTCCAAATTAGGAAGTGTTTGGGGTTCATTCTGACCCACGTACTGGGGGTACCTAAGAACAGCTAACACAACAAGAGTCTGCCACATATTTTAATTATCACACATTATCTTACGTGTCATCTCTCTTTCTTCTTTTTATTTGTGTTCTATCACGTCTACACCAAATAAATAATTTTTTTTTTAAATGATAAATTTAGTCATTTGCCCATTTTTCCAAATTGAAATAGATTTTCGACAATACCATCCTATTTTCGCCATTTATCCCGCCGACCCTATAATAATTCTATTAAAAATATATAATTGATATACATTTATTTGGTTTATTAGTTGATTGATATACCAAAAAAACGTAATTTTCTTAAAAAGTCAAAATTGGAATAAAAAATTCAAATTTGAAAATTATACTATATCTTCAATTTTTCATATGTCGAAGATACACTCTTAATTATACATTTTGAATTTGTCACCTATTGCAATTGTCCTTTATTTATATATATATATATATATATGTATATATATATATTATATTTTGATTGTTTTAATTTTTCCATAATATTTCCAATTTTGTAAAAGAAAAAGCAATATTTTTCAACTTTCAGATGTGCAATGAAACTTGCTAAAATACATATTTTATCATCCTAAGTTTTGAAAATTGTGAATAATAAACGACTTAAACTTTCAATTTTTGTACAATTGTGTATAAACTTTCAATTCTGTGTCTCGAAAATATTTATTTGTAAATTAACTATTTTATTAGACAAAATAATTATTTGTTGTCTAATTGAACCTTAAACTTTCAATTTTGTGATCATTATACATTAATTTTAAAAAGATATCCAATAGTACCTATTATTGACAGTTAAATTTCATGTGTAATATAACATTTAATTTCTAACATTTTTTAATAGGTAAGAGTTCCATTGGATGCAAAATCAATATTTTAAGAATATATTAGACACAAAAATCAAGAATTCATGAACCTATTAGACACATTTTAAAGTTCAAAAACTATATATAAACACAATCTAAATATTCAAGGCTAAACTTCTAACTATATAGAAATTTATGTTCTGTTTCGAAGTTGTGGGCTCGTCATTGCACGATGGTGCACATAATTGTTAAAATTATATGAACACGAGCTCTGTTGCCTTGACCCGTTCATGAACGTGTCAAATTTCGCCTCTTGGAAAGATGATATCGTGGTAGTGAAAGAAGTGGAGGCTTTGGAAGACCATACTTGGGGTGGTCGAGTTGGGCTAATGGAAATAAAAACAAAAAAAAGAAAAACCAATTTTAATACTGGTATAAGTTTGAGGGTTCAATTTTTACCATTAAATATTTGAGGTCCAATTCTTACCACTGAAAGCTTGAGAGTGTATTTACAACTAATGATAATCCAACCACATGAACACAAACAACCCATCAAAAGATTAATGCACAACCTCTCACCCATTGCAATGAGTTTACCATGGTAAGTGCACAACCAATGTCACTCTTATACGCTCTCGTGTCCCAAGCAACATCACACAACGATGTCAACCATTGCTCATGGAGCAAGCCCTCATGTACCATCGTCTTGTGGCCCACCTCCCAATCGAGCCAAGTTGTCCAATAGTCAACTTCGATTCTATAATTGTCTTAGTCGAAAAATTTAAGAGAAACCCTGAATTGAATCAAGCATACCTAGAGAGTTGTCTCCAGCTCTCATATATAGTAGACTATATATCTTAATTTTCTTAAATAAGATTCCGAAGAGTATGAGTAGATAATAGTTATAAAATTTTAATCATTAGACCCCATAAATTTATGTTGGGAAATCATTTATATATATATTGGTCCATCTTGATGTTGAATTTTAGTGGAGTGCACTCTATTTTTGAAACCACATTTAGTAAAATAGTGATCACATGTAGGATGAATAAGAATAAAGTAAAAAAAGATAATGATAAAATATAGTTTTAATTTCACTGAATTTGTAACTGTTATGTGAAATTAGACTATAGTGTCTTTGTAGTTCTGGTAACTGCCATAACATTGTTACAAAATTAAATAATATCCTTTAATTTTTAATATTAAATTAAATGACTAGAAACCACCTTTACTCCCACTTATTTAAAGTCCAATACATTTCTAGTTCTCACAAACTTCTCCTACTCTTCCTCTCTCTCAACTTCTATTGTTCTTATTTTAGTTTATTATTGCTAAAAATAGTATATTCATGTTAACTTTGCTATTACCTCTACTGTTATATCTTGAGACAAATTCTGATTTTTTACCCATGATAATGTTTTGTTATCTTATTATTCACATGATTTTGCATATAATAACATGAGGCTTTATATTAAGAAATTAATAGGGATTTATGAAATATTAAGAACTAAGTTGAAACTTACTTATTGGAACTATTTCATATGTTTAACCTATTAAAAGAAAGAGGAAAAAAGAAAAGAAAATAGGAAATGTTTACATGTGTAAGTGTTTTAGTCTACTTAGATGTGTGGTTCAGCTAACTTCACCAAATTTTATTGTCTTTTACAACAAAAAGAATATATATTTATATAGAATATAGTTCTTGAAGAAATATTTATTTAAAATGAGAAAAAAGAAAATGTAATTTAACCAAAAAGTTTTGAGACCACTCAAAGGTGGACCCAATATCTATTCCAACCAATAGCATCTCAGCTTCCCATATCTGCAATGCTCAAACATTTTCCTCTCAATTTTCTTCCCATTATCTTTCATTTTTCCAACATTCTTGCATTCCCATTTTCTCTCTATTTCTTTCTTTCCATGAATTTTTGAATAAACCCCACCAGAAATTTTGCATCAAAATTCTCAAAAATATCGTTGATATTCATCAATCCAACAACAACAACAAACCATTCTGCCTTCTTCTTCCTTTGGATTCATCGTCTCTCTCTCTCTCTCTCTTTCTTTCTCTCTCTAGAGTTGCGGAGTGAAAACTCCATTGTCTTCCTCCCTTTTCTCCATTGCAGGTACTTTTTTTCTCCATTACTCTTTCTGGATTCTGCAGTTTTTGCTGTTTCCATGTTTCATTCAATCCGAAGTTCATTTTCGTAGACTGATTTTGTTCTGTTTGCTCTTATTCTAACCCTTCTATGTTCTTGTCAAGTTTGTCGAGTTTATATTCTTCCATTGTTTGTAGATTTCAGGTGGGAATTTAATCCCCTTTCTTCTCTGTTTAATGAATTTAGGGCTGTGGTTTTGGTGGAGGGATTTTGAGGTTAACTATTTGAAGTCATTGATCCATTGTTGGTGGTGAAGCAAATAGAGTTTGAAGTTTGATTTGGTGTAATTGATTTTGATGATAAGAGTTTTGTGCATAAGAAGAAGAGAAGCCATATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCAAAAAGGTTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTTTGTATGCTAATGACCATAGGTTGGGACAAACTCAAGTTTCCCCCACAAAGAATGTGATAATAGCGAAAAGTTCGGCTAACTTTTTTCCGAGCTATCCATTGTCGAATCGGCATTCGCAGTGCATCAAAGCTTTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGCTTCATAATACCACAATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGTTGGAGAAGCAATGGAATCTATCTTTTGAGCAAACTGTGTCGACCGATACGCTTAGAGGAAAAACACTGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGCAAACATGCTTTTATGGCTCAACCAAAAATCAGCAAACAGTTAAGACCTACTATCAGTCCTGAGCTACTCCAAAATCGATTGAAGGGCTATGTGAAAGGCTTATTAAGTGAAGAGTTACTTTCTCATGCCGAAGTTGTTCGTCTTTCAAAGAAAATTAAGGTCGGTCTCGCATTAGAGGAGCGTAAAACCAGGTCAGTACATGGCTTCTTGTTCAGATTCTCATAGTTTACTTTAGCTATGATGTACTTATACAATTGAGTAATAGTAACCTTATTCCTGCTCGTTATGTAGTTCTATTACTCCATTGTTAAAACACAGCTCTAATAATGATATCATGAACTTTACCCTTACTTCCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGAGCAACTAGCGATATCGCTTAAGATTTCTCGTGCCGAATTACGGTCAAGGGTAATAGAATGTTCATTGGCAAGAGAGAAGCTAGCGATGAGCAACGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGGGCTGAAATGGCGGACTTAGTTCAGGTGAAGAGCTTGTAACAACACGTACAACTAACTCTACACCTTATTAGTTTTTCCCCTAATTGAAGAGTTTGTTTGTGTTTAATGTAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAAGGATTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGTGAGGATATAAATACTTTGAGAAAAAAATAGATAGCATCAAATTGTTTTATTTGCACATATTACCATTGCATATGAAACGTAAGAAGTTTTCAAACTTGAGACTGTATTTTTTTACAAAGACAATCCTAAGTTTCTGTTAGTGTTTTCTTATTTCAAATAGATGAAAGACAGATCTTCTCTTATAAAAGAAAACGAAATACAAATTTAGTAGAGGTATTACAGAATAAGAGACATTATCAAACATGTTCATTTGCCTAAAACAAAAGGAGGGATGAAAGGAATGGACAAAGACCTTTTAATTAAGTACATAATAACATTTAAAAAAAATTGCAAATATAAATAAAATCTATCAATGATAAAATTCTATCAATGTAAGTATCTGAACTTGGTGCAAGCTATGACAATTCAATGTCTTCATCCATACACAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGGCTGCAAGAGAAAGGAATCACTCCATCACTTGATGTAAGTGAAATCTTGTTGACATAAAAACGCAAGTTTAATTGCTAACTAAACTAATATAAACTTTGTGAACTTTCTATTTATCTCAGAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTAAAGAATGCCACAGAGGTATTACAAATATCTAATAACCAATCCATTTTGCTCTTTCGTAATGAATATCTGTTTTTCATTTTCCTTATCAAGCCAACCATTCATCTCTTTTAGGCAATCAGCAAGGTGTTTTCGCTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGTGAAACTCATCACAGCGTAAGCCTTGAATAGCAACTCTATTTCTGCAAACATACCATGATTTTCAGAATATTGTTCTCAGTTTTTAGCACTCCTTGAATTCCTTTGTTTTCGTTTTGTTTTCACAGTATATTGCAGATAACTGCCTCGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGTAAAATAGATAGCCCACCAAACCAAAAAAAAGACTTGAGAGAGTGGAAAACTACATCATTTTCATCAATATAAGATGAAGAATACGCAGTTAGTTTTCTTATCTGGATGAATAATCAACTAAAATATACTCGAAAATATTGGCAGGCTGAGGTTAACGAACTCATAAATATAACACTAGGGGACCGAGAAAGAGAGATCATCCGCCTTTACCATGGTCTGGACAATGAATGTCTGACATGGGAGGAAATAAGCAAACGGTAAGTCAAAGGAACATATCTGAGCAAAATGCTAATGTCATTCTAAGTTAGCTGACAAATGTACTTTTGGTCTGAGTTTTTCAGCATAGGGTTGTCCAGAGAAAGGGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACGAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

mRNA sequence

ATGGTAAGAAGTATAATTAGTCATTCTTCTTTACCAGAATCTCTCTGGGGTAAGGCATTAAAGACTGCAGCATATATCCCCAATAAGATACCTAGTAAAGCGATAGCTAAAACCCCTTATGAGTTGTGGACAGAAAAGACGCCTAGTATTAAGCATCTTTACATCTGGGGTTGTCCAACTGAGGCTAGGCCATACAGGCCTAATGAAAAAAAATTGGACTCAAGAACTATTAGCTACTATTTTGTTGGATATAAGGCTCGTCTTGTTGCAAAGGGTTCTACTCAAAAGGAAGGCATTGATTACAAAGAGACTTTCTCTCCAGTTTCATCGAAAGACTCTTTCAGGGTAATCATGGCACTTGTAGCTCACTTTGATTTAGAGCTACATCAGATGGATGTAAAAACTGCATTTCTCAATGGAAACATTGATGAGACAATTTATATGGTGCAACAAGAAAACTTTTTGTCTGAGATCATTGGGTATTCTGATTTCGATTATGTTGGATGTCAAGACACTTTGCGATCCACTTCAGGCTATATCTTCATGTCGACTGGAGGAGCTGTATCTTGGAAAAGTGTTAAACAAACACTTATGGCTTCTTCTACCATGGTTGCAGAGTTTATAGCATGTTATGATGAGGCATCCAATCATGGAATATGGTTGCAAATTTTTGTCACTAGGCTGCGGATAGTGAGTTGCGGAGTGAAAACTCCATTGTCTTCCTCCCTTTTCTCCATTGCAGGGCTGTGGTTTTGGTGGAGGGATTTTGAGAGTTTTGTGCATAAGAAGAAGAGAAGCCATATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCAAAAAGGTTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTTTGTATGCTAATGACCATAGGTTGGGACAAACTCAAGTTTCCCCCACAAAGAATGTGATAATAGCGAAAAGTTCGGCTAACTTTTTTCCGAGCTATCCATTGTCGAATCGGCATTCGCAGTGCATCAAAGCTTTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGCTTCATAATACCACAATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGTTGGAGAAGCAATGGAATCTATCTTTTGAGCAAACTGTGTCGACCGATACGCTTAGAGGAAAAACACTGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGCAAACATGCTTTTATGGCTCAACCAAAAATCAGCAAACAGTTAAGACCTACTATCAGTCCTGAGCTACTCCAAAATCGATTGAAGGGCTATGTGAAAGGCTTATTAAGTGAAGAGTTACTTTCTCATGCCGAAGTTGTTCGTCTTTCAAAGAAAATTAAGGTCGGTCTCGCATTAGAGGAGCGTAAAACCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGAGCAACTAGCGATATCGCTTAAGATTTCTCGTGCCGAATTACGGTCAAGGGTAATAGAATGTTCATTGGCAAGAGAGAAGCTAGCGATGAGCAACGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGGGCTGAAATGGCGGACTTAGTTCAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAAGGATTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGGCTGCAAGAGAAAGGAATCACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTAAAGAATGCCACAGAGGCAATCAGCAAGGTGTTTTCGCTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGTGAAACTCATCACAGCTATATTGCAGATAACTGCCTCGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACGAACTCATAAATATAACACTAGGGGACCGAGAAAGAGAGATCATCCGCCTTTACCATGGTCTGGACAATGAATGTCTGACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGGGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACGAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Coding sequence (CDS)

ATGGTAAGAAGTATAATTAGTCATTCTTCTTTACCAGAATCTCTCTGGGGTAAGGCATTAAAGACTGCAGCATATATCCCCAATAAGATACCTAGTAAAGCGATAGCTAAAACCCCTTATGAGTTGTGGACAGAAAAGACGCCTAGTATTAAGCATCTTTACATCTGGGGTTGTCCAACTGAGGCTAGGCCATACAGGCCTAATGAAAAAAAATTGGACTCAAGAACTATTAGCTACTATTTTGTTGGATATAAGGCTCGTCTTGTTGCAAAGGGTTCTACTCAAAAGGAAGGCATTGATTACAAAGAGACTTTCTCTCCAGTTTCATCGAAAGACTCTTTCAGGGTAATCATGGCACTTGTAGCTCACTTTGATTTAGAGCTACATCAGATGGATGTAAAAACTGCATTTCTCAATGGAAACATTGATGAGACAATTTATATGGTGCAACAAGAAAACTTTTTGTCTGAGATCATTGGGTATTCTGATTTCGATTATGTTGGATGTCAAGACACTTTGCGATCCACTTCAGGCTATATCTTCATGTCGACTGGAGGAGCTGTATCTTGGAAAAGTGTTAAACAAACACTTATGGCTTCTTCTACCATGGTTGCAGAGTTTATAGCATGTTATGATGAGGCATCCAATCATGGAATATGGTTGCAAATTTTTGTCACTAGGCTGCGGATAGTGAGTTGCGGAGTGAAAACTCCATTGTCTTCCTCCCTTTTCTCCATTGCAGGGCTGTGGTTTTGGTGGAGGGATTTTGAGAGTTTTGTGCATAAGAAGAAGAGAAGCCATATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCAAAAAGGTTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTTTGTATGCTAATGACCATAGGTTGGGACAAACTCAAGTTTCCCCCACAAAGAATGTGATAATAGCGAAAAGTTCGGCTAACTTTTTTCCGAGCTATCCATTGTCGAATCGGCATTCGCAGTGCATCAAAGCTTTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGCTTCATAATACCACAATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGTTGGAGAAGCAATGGAATCTATCTTTTGAGCAAACTGTGTCGACCGATACGCTTAGAGGAAAAACACTGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGCAAACATGCTTTTATGGCTCAACCAAAAATCAGCAAACAGTTAAGACCTACTATCAGTCCTGAGCTACTCCAAAATCGATTGAAGGGCTATGTGAAAGGCTTATTAAGTGAAGAGTTACTTTCTCATGCCGAAGTTGTTCGTCTTTCAAAGAAAATTAAGGTCGGTCTCGCATTAGAGGAGCGTAAAACCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGAGCAACTAGCGATATCGCTTAAGATTTCTCGTGCCGAATTACGGTCAAGGGTAATAGAATGTTCATTGGCAAGAGAGAAGCTAGCGATGAGCAACGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGGGCTGAAATGGCGGACTTAGTTCAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAAGGATTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGGCTGCAAGAGAAAGGAATCACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTAAAGAATGCCACAGAGGCAATCAGCAAGGTGTTTTCGCTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGTGAAACTCATCACAGCTATATTGCAGATAACTGCCTCGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACGAACTCATAAATATAACACTAGGGGACCGAGAAAGAGAGATCATCCGCCTTTACCATGGTCTGGACAATGAATGTCTGACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGGGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACGAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Protein sequence

MVRSIISHSSLPESLWGKALKTAAYIPNKIPSKAIAKTPYELWTEKTPSIKHLYIWGCPTEARPYRPNEKKLDSRTISYYFVGYKARLVAKGSTQKEGIDYKETFSPVSSKDSFRVIMALVAHFDLELHQMDVKTAFLNGNIDETIYMVQQENFLSEIIGYSDFDYVGCQDTLRSTSGYIFMSTGGAVSWKSVKQTLMASSTMVAEFIACYDEASNHGIWLQIFVTRLRIVSCGVKTPLSSSLFSIAGLWFWWRDFESFVHKKKRSHMMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFPSYPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLEKQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH

Homology

[Close]

BLAST of ClCG02G007910 vs. NCBI nr
Match: XP_038902049.1 (RNA polymerase sigma factor sigA [Benincasa hispida])

HSP 1 Score: 951.4 bits (2458), Expect = 4.7e-273
Identity = 493/509 (96.86%), Postives = 500/509 (98.23%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYA-NDHRLGQTQVSPTKNVIIAKSSANFF 327
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKILY  NDHRLGQTQVSPTK+V+IAKSSANF 
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYVNNDHRLGQTQVSPTKSVVIAKSSANFS 60

Query: 328 PSYPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 387
           PSYP SNRHSQCIKA+KEHVDTPSSPTAEPWLHNTTIWEDEE DLKCTVEALLLLQKSML
Sbjct: 61  PSYPSSNRHSQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEEIDLKCTVEALLLLQKSML 120

Query: 388 EKQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQ 447
           EKQWNLSFEQTVSTD  RGKT KKVPVTCSGVSARQRRMSSKRKIQSKH FMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 448 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 507
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 240

Query: 508 SEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 567
           SE+QLAISLKISRAELRSRV+ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 568 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 627
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360

Query: 628 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 687
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 688 CLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 747
           CLENNPWHGTDTWILKAEVN+LIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 748 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           RVRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509

[Close]

BLAST of ClCG02G007910 vs. NCBI nr
Match: XP_016902935.1 (PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa] >TYK00943.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa])

HSP 1 Score: 942.6 bits (2435), Expect = 2.2e-270
Identity = 488/509 (95.87%), Postives = 500/509 (98.23%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYAND+RLGQTQVSPTK+V+IAKSSANF P
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 328 SYPLSNRHS-QCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 387
           SYPLSNRHS QCIKA+KEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 388 EKQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQ 447
           EKQWNLSFEQTVSTD  R KTLKKVPVTCSGVSARQRRMSSKRKIQSKH FMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 448 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 507
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 508 SEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 567
           SE+QLAISLKISRAELRSR++ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 568 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 627
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 628 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 687
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 688 CLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 747
           CLENNPWHGTDTWILKAEVN+LIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 748 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of ClCG02G007910 vs. NCBI nr
Match: XP_022148631.1 (RNA polymerase sigma factor sigA [Momordica charantia] >XP_022148632.1 RNA polymerase sigma factor sigA [Momordica charantia])

HSP 1 Score: 919.8 bits (2376), Expect = 1.5e-263
Identity = 474/508 (93.31%), Postives = 491/508 (96.65%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMATAAIIGLGAAKRLLNSSSYYSDF EK+LYANDHRLGQ+QVSPTK+V+IAKSSANF P
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSP 60

Query: 328 SYPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 387
           S+P SNRH+QCIKA+KEHVDTPSSPT EPWL N+T WEDEE DLKCTVEALLLLQKSMLE
Sbjct: 61  SFPSSNRHTQCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSMLE 120

Query: 388 KQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQL 447
           KQWNLSFEQTV TD  RG+T KKVPVTCSGVSARQRRMSSKRKIQSK+ FM QPKISKQL
Sbjct: 121 KQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQL 180

Query: 448 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 507
           R TISPELLQ RLKGYVKGL+SEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS
Sbjct: 181 RSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 240

Query: 508 EEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 567
           E+QLAISLKISR ELRSRVIECSLA+EKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 568 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 627
           GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360

Query: 628 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 687
           QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNX 420

Query: 688 LENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 747
           LEN+PWHGTDTWILKAEVN+LIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 748 VRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           VRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of ClCG02G007910 vs. NCBI nr
Match: XP_023533104.1 (RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533106.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 916.4 bits (2367), Expect = 1.7e-262
Identity = 472/508 (92.91%), Postives = 490/508 (96.46%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMATAAIIGLGAAKRLLNSSSYYSDFTEK+LY NDHRLGQ QVS TK+V+IAK SA+F P
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 328 SYPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 387
           SYP SNRH QCIKA+KEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 388 KQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQL 447
           KQWNLSFEQTVSTD  RGKT KKVPVTCSGVSARQRRMSSKRKIQSKH F+AQPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFIAQPKISKQL 180

Query: 448 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 507
           +P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEE KTRLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 508 EEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 567
           EEQLAISL+ISRAELRSRV+ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 568 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 627
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 628 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 687
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 688 LENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 747
           LENNPWHGTDTWILK EVN+LIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 748 VRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of ClCG02G007910 vs. NCBI nr
Match: KAG6605170.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035161.1 RNA polymerase sigma factor sigA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 915.6 bits (2365), Expect = 2.9e-262
Identity = 472/508 (92.91%), Postives = 489/508 (96.26%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMATAAIIGLGAAKRLLNSSSYYSDFTEK+LY NDHRLGQ QVS TK+V+IAK SA+F P
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 328 SYPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 387
           SYP SNRH QCIKA+KEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 388 KQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQL 447
           KQWNLSFEQTVSTD  RGKT KKVPVTCSGVSARQRRMSSKRKIQSKH FMAQPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 448 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 507
           +P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEE KTRLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 508 EEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 567
           EEQLAISL+ISRAELRSRV+ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 568 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 627
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 628 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 687
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 688 LENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 747
           LENNPWHGTDTW LK EVN+LIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 748 VRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of ClCG02G007910 vs. ExPASy Swiss-Prot
Match: O24629 (RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 1.4e-190
Identity = 358/516 (69.38%), Postives = 422/516 (81.78%), Query Frame = 0


Query: 269 MATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFPS 328
           MATAA+IGL   KRLL+SS Y+SD TEK L  NDH   Q  ++ TK+ I AK ++N+ PS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 329 YPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWE------DEETDLKCTVEALLLLQ 388
           +P SNRH+Q  KALKE VD  S  T +PWL N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 389 KSMLEKQWNLSFEQTVSTDTLRGKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHAFMA 448
           KSMLEK WNLSFE+ VS++     T+  KK+PV TCSG+SARQRR+ +K+K    H    
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 449 QPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLK 508
                      +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K+RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 509 ERLGCEPSEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 568
           +RLGCEPS+EQLA+SLKISRAEL++ ++EC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 569 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 628
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 629 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 688
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 689 HSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISK 748
           HSYIAD  LENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 480

Query: 749 RIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           RIGLSRERVRQVGLVALEKLK AA+ RKMEAM+LK+
Sbjct: 481 RIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of ClCG02G007910 vs. ExPASy Swiss-Prot
Match: Q0J7T6 (RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIGA PE=2 SV=2)

HSP 1 Score: 464.5 bits (1194), Expect = 2.3e-129
Identity = 268/531 (50.47%), Postives = 356/531 (67.04%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           M AT A+IGL A  RLL++S     F    L  +   LG               + +F P
Sbjct: 1   MTATPAVIGLSAGNRLLSAS-----FGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAP 60

Query: 328 SYPLSNR---------------HSQCIKALKEHVD-----TPSSPTAEPWLHNTTIWEDE 387
             P + +                +Q ++AL+ H        P  P   P   +       
Sbjct: 61  PAPATPKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAH 120

Query: 388 ETDLKCTVEALLLLQKSMLEKQWNLSFEQTVSTDTL------RGKTLKKVPVTCSGVSAR 447
             DL+ ++EA++LLQ+SMLEKQW L F+       +         +   V V  S VSAR
Sbjct: 121 AHDLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSAR 180

Query: 448 QRRMSSKRKIQSKHAFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRL 507
           QRRMS +R+ ++K+               +SPEL+Q+R + Y++G +S+ELL+H +VV L
Sbjct: 181 QRRMSGRRRGRTKNG---------AAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHL 240

Query: 508 SKKIKVGLALEERKTRLKERLGCEPSEEQLAISLKISRAELRSRVIECSLAREKLAMSNV 567
           S KIK G+ L++++++LKE+LG EPS +QLA SLKIS  ELRSR+ E  LARE L MSN+
Sbjct: 241 SHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNL 300

Query: 568 RLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 627
           RLV+SIAQ+YDN+G E+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL 
Sbjct: 301 RLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALA 360

Query: 628 ENSRTLRLPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVF 687
           ENS+T RLPT+LHERL  IR AK  L+++GI P+++ IA SLN+S+KKV NATEA++KV 
Sbjct: 361 ENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVL 420

Query: 688 SLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREII 747
           SLD++AFPSLNGLPGET HSYI D  + N+PWHG + W LK EVN+L+N TL +RER+II
Sbjct: 421 SLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDII 480

Query: 748 RLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAML 773
           RLYHG+  +C TWE+IS++ GLSRERVRQVGL+A+EKLK AA+ + +EA+L
Sbjct: 481 RLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517

[Close]

BLAST of ClCG02G007910 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-39
Identity = 116/331 (35.05%), Postives = 179/331 (54.08%), Query Frame = 0


Query: 439 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRL 498
           A  K   ++R T +    ++ ++ Y++ +    LL   E + L+++I   LALE  +  L
Sbjct: 74  AAAKAKAKVRKTYT----EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDEL 133

Query: 499 KERLGCEPSEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEM 558
            E+L   PS+ + A ++     E R R+     A++K+  SN+RLV+SIA++Y N G   
Sbjct: 134 LEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 193

Query: 559 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 618
            DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E + 
Sbjct: 194 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 253

Query: 619 LI-RNAKVRLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNG 678
            I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L  
Sbjct: 254 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 313

Query: 679 L---PGETHHSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDN- 738
                GET    +A N L               E  E +  TL  RER+++RL +GLD+ 
Sbjct: 314 FIEADGETPEDEVAKNLLR--------------EDLEGVLSTLSPRERDVLRLRYGLDDG 373

Query: 739 ECLTWEEISKRIGLSRERVRQVGLVALEKLK 761
              T EEI +   ++RER+RQ+   AL KL+
Sbjct: 374 RMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of ClCG02G007910 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.9e-39
Identity = 112/330 (33.94%), Postives = 185/330 (56.06%), Query Frame = 0


Query: 442 KISKQLRPTISPE--LLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLK 501
           K +K  R T S +    ++ ++ Y++ +    LL   E + L++KI   L LE  + RL 
Sbjct: 62  KAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 121

Query: 502 ERLGCEPSEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 561
           E+L  +P + + A ++++     R R+     A++K+  SN+RLV+SIA++Y N G    
Sbjct: 122 EKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 181

Query: 562 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 621
           DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E +  
Sbjct: 182 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 241

Query: 622 I-RNAKVRLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNGL 681
           I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L   
Sbjct: 242 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 301

Query: 682 ---PGETHHSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDN-E 741
               GET    ++ N             +L+ ++ ++++ +L  RER+++RL +GLD+  
Sbjct: 302 IESDGETPEDQVSKN-------------LLREDLEKVLD-SLSPRERDVLRLRYGLDDGR 361

Query: 742 CLTWEEISKRIGLSRERVRQVGLVALEKLK 761
             T EEI +   ++RER+RQ+   AL KL+
Sbjct: 362 MKTLEEIGQIFNVTRERIRQIEAKALRKLR 377

[Close]

BLAST of ClCG02G007910 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-38
Identity = 113/312 (36.22%), Postives = 176/312 (56.41%), Query Frame = 0


Query: 469 SEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEEQLAISLKISRAELRSRVIE 528
           S +LL+  E   LS  I+  L LE  +T L ER G +P+  Q A +  + +  LR R+  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 529 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 588
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 589 YWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL-QEKGITPSLDRIAESLNMSK 648
           +WWI+Q V ++L + SR +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 649 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWIL-----K 708
           K++     +     SLD++   + N  P E     IAD      P   T   IL     +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IAD------PEAVTSEDILIKEFMR 508

Query: 709 AEVNELINITLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 768
            +++++++ +LG RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A  KLK 
Sbjct: 509 QDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 568

Query: 769 AAKTRKMEAMLL 774
             +   ++  L+
Sbjct: 569 KKRNNHLQQYLV 569

[Close]

BLAST of ClCG02G007910 vs. ExPASy TrEMBL
Match: A0A5D3BME8 (RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001180 PE=3 SV=1)

HSP 1 Score: 942.6 bits (2435), Expect = 1.1e-270
Identity = 488/509 (95.87%), Postives = 500/509 (98.23%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYAND+RLGQTQVSPTK+V+IAKSSANF P
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 328 SYPLSNRHS-QCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 387
           SYPLSNRHS QCIKA+KEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 388 EKQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQ 447
           EKQWNLSFEQTVSTD  R KTLKKVPVTCSGVSARQRRMSSKRKIQSKH FMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 448 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 507
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 508 SEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 567
           SE+QLAISLKISRAELRSR++ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 568 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 627
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 628 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 687
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 688 CLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 747
           CLENNPWHGTDTWILKAEVN+LIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 748 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of ClCG02G007910 vs. ExPASy TrEMBL
Match: A0A1S4E4N5 (RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV=1)

HSP 1 Score: 942.6 bits (2435), Expect = 1.1e-270
Identity = 488/509 (95.87%), Postives = 500/509 (98.23%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYAND+RLGQTQVSPTK+V+IAKSSANF P
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 328 SYPLSNRHS-QCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 387
           SYPLSNRHS QCIKA+KEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 388 EKQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQ 447
           EKQWNLSFEQTVSTD  R KTLKKVPVTCSGVSARQRRMSSKRKIQSKH FMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 448 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 507
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 508 SEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 567
           SE+QLAISLKISRAELRSR++ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 568 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 627
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 628 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 687
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 688 CLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 747
           CLENNPWHGTDTWILKAEVN+LIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 748 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of ClCG02G007910 vs. ExPASy TrEMBL
Match: A0A6J1D604 (RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 PE=3 SV=1)

HSP 1 Score: 919.8 bits (2376), Expect = 7.3e-264
Identity = 474/508 (93.31%), Postives = 491/508 (96.65%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMATAAIIGLGAAKRLLNSSSYYSDF EK+LYANDHRLGQ+QVSPTK+V+IAKSSANF P
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSP 60

Query: 328 SYPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 387
           S+P SNRH+QCIKA+KEHVDTPSSPT EPWL N+T WEDEE DLKCTVEALLLLQKSMLE
Sbjct: 61  SFPSSNRHTQCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSMLE 120

Query: 388 KQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQL 447
           KQWNLSFEQTV TD  RG+T KKVPVTCSGVSARQRRMSSKRKIQSK+ FM QPKISKQL
Sbjct: 121 KQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQL 180

Query: 448 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 507
           R TISPELLQ RLKGYVKGL+SEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS
Sbjct: 181 RSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 240

Query: 508 EEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 567
           E+QLAISLKISR ELRSRVIECSLA+EKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 568 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 627
           GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360

Query: 628 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 687
           QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNX 420

Query: 688 LENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 747
           LEN+PWHGTDTWILKAEVN+LIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 748 VRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           VRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of ClCG02G007910 vs. ExPASy TrEMBL
Match: A0A0A0LQR2 (RNA_pol_sigma70 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G431090 PE=3 SV=1)

HSP 1 Score: 915.2 bits (2364), Expect = 1.8e-262
Identity = 477/509 (93.71%), Postives = 494/509 (97.05%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYAND+RLGQTQVS +K+V+IAKSSANF P
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 328 SYPLSNRHS-QCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 387
            YP SNRHS QCIKA+KEHV+TPSSP AEPW HNTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPW-HNTTSWEDEETELKYTVEALLLLQKSML 120

Query: 388 EKQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQ 447
           EKQW+LSFEQTVSTDT + KTLKKVPVTCSGVSARQRRMSSKRKIQSKH FMAQPKISKQ
Sbjct: 121 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 448 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 507
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGL LEERKTRLK+RLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 240

Query: 508 SEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 567
           SE+QLAISLKISRAELRSR++E SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 568 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 627
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 628 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 687
           LQEKGITPSLDRIAESLNMSKKKV+NATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 688 CLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 747
           CLENNPWHGTDTWILK EVN+LIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 748 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           RVRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of ClCG02G007910 vs. ExPASy TrEMBL
Match: A0A6J1KWY7 (RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC111499522 PE=3 SV=1)

HSP 1 Score: 912.9 bits (2358), Expect = 9.0e-262
Identity = 471/508 (92.72%), Postives = 487/508 (95.87%), Query Frame = 0


Query: 268 MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFP 327
           MMATAAIIGLGAAKRLLNSSSYYSDFTEK+LY NDHRLGQ QVS TK V+IAK SA+F P
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSP 60

Query: 328 SYPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 387
           SY  SNRH QCIKA+KEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYSPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 388 KQWNLSFEQTVSTDTLRGKTLKKVPVTCSGVSARQRRMSSKRKIQSKHAFMAQPKISKQL 447
           KQWNLSFEQTVSTD  RGKT KKVPVTCSGVSARQRRMSSKRKIQSKH FMAQPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 448 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 507
           +P ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEE KTRLKERL C+PS
Sbjct: 181 KPNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDPS 240

Query: 508 EEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 567
           EEQLAISL+ISRAELRSRV+ECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 568 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 627
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 628 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNC 687
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 688 LENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 747
           LENNPWHGTDTWILK EVN+LIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 748 VRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of ClCG02G007910 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 667.9 bits (1722), Expect = 9.7e-192
Identity = 358/516 (69.38%), Postives = 422/516 (81.78%), Query Frame = 0


Query: 269 MATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFPS 328
           MATAA+IGL   KRLL+SS Y+SD TEK L  NDH   Q  ++ TK+ I AK ++N+ PS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 329 YPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWE------DEETDLKCTVEALLLLQ 388
           +P SNRH+Q  KALKE VD  S  T +PWL N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 389 KSMLEKQWNLSFEQTVSTDTLRGKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHAFMA 448
           KSMLEK WNLSFE+ VS++     T+  KK+PV TCSG+SARQRR+ +K+K    H    
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 449 QPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLK 508
                      +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K+RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 509 ERLGCEPSEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 568
           +RLGCEPS+EQLA+SLKISRAEL++ ++EC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 569 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 628
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 629 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 688
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 689 HSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISK 748
           HSYIAD  LENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 480

Query: 749 RIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 776
           RIGLSRERVRQVGLVALEKLK AA+ RKMEAM+LK+
Sbjct: 481 RIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of ClCG02G007910 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 619.8 bits (1597), Expect = 3.0e-177
Identity = 329/482 (68.26%), Postives = 390/482 (80.91%), Query Frame = 0


Query: 269 MATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDHRLGQTQVSPTKNVIIAKSSANFFPS 328
           MATAA+IGL   KRLL+SS Y+SD TEK L  NDH   Q  ++ TK+ I AK ++N+ PS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 329 YPLSNRHSQCIKALKEHVDTPSSPTAEPWLHNTTIWE------DEETDLKCTVEALLLLQ 388
           +P SNRH+Q  KALKE VD  S  T +PWL N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 389 KSMLEKQWNLSFEQTVSTDTLRGKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHAFMA 448
           KSMLEK WNLSFE+ VS++     T+  KK+PV TCSG+SARQRR+ +K+K    H    
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 449 QPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLK 508
                      +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K+RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 509 ERLGCEPSEEQLAISLKISRAELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 568
           +RLGCEPS+EQLA+SLKISRAEL++ ++EC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 569 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 628
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 629 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 688
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 689 HSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREIIRLYHGLDNECLTWEEISK 742
           HSYIAD  LENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 468

[Close]

BLAST of ClCG02G007910 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 163.3 bits (412), Expect = 7.7e-40
Identity = 113/312 (36.22%), Postives = 176/312 (56.41%), Query Frame = 0


Query: 469 SEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEEQLAISLKISRAELRSRVIE 528
           S +LL+  E   LS  I+  L LE  +T L ER G +P+  Q A +  + +  LR R+  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 529 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 588
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 589 YWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL-QEKGITPSLDRIAESLNMSK 648
           +WWI+Q V ++L + SR +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 649 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWIL-----K 708
           K++     +     SLD++   + N  P E     IAD      P   T   IL     +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IAD------PEAVTSEDILIKEFMR 508

Query: 709 AEVNELINITLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 768
            +++++++ +LG RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A  KLK 
Sbjct: 509 QDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 568

Query: 769 AAKTRKMEAMLL 774
             +   ++  L+
Sbjct: 569 KKRNNHLQQYLV 569

[Close]

BLAST of ClCG02G007910 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 151.0 bits (380), Expect = 4.0e-36
Identity = 102/313 (32.59%), Postives = 173/313 (55.27%), Query Frame = 0


Query: 460 LKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSEEQLAISLKISR 519
           L+ ++ G  +++LL+  E   L   I+  L LE+ KT+L+ + GCEP+  + A ++ IS 
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294

Query: 520 AELRSRVIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSS 579
             L+S +     +REKL  +N+RLV+ IA++Y N G    DL+Q G +GL++ +EKF   
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354

Query: 580 KGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA-KVRLQEKGITPSLDR 639
            G + +TY YWWIRQ + +++ +NSRT+RLP +++  LG +  A K  +QE    PS + 
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414

Query: 640 IAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDT 699
           +A  + +S +K+           S+ +  +   +     T      D+ +E  P      
Sbjct: 415 LAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQD----TTFQEITPDSGIE-TPTMSVGK 474

Query: 700 WILKAEVNELINITLGDREREIIRLYHGLD-NECLTWEEISKRIGLSRERVRQVGLVALE 759
            +++  V  L+N+ L  +ER II+L  G+D  +  +  EI +  GLS+ERVRQ+   AL 
Sbjct: 475 QLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALY 534

Query: 760 KLKKAAKTRKMEA 771
           +LK+   +  + A
Sbjct: 535 RLKQNMNSHGLHA 541

[Close]

BLAST of ClCG02G007910 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-34
Identity = 113/341 (33.14%), Postives = 166/341 (48.68%), Query Frame = 0


Query: 426 SSKRKIQSKHAFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKI 485
           S KR+ + +   +   ++  +       E     +   V G      LS  E V+L   +
Sbjct: 76  SEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYL 135

Query: 486 KVGLALEERKTRLKERLGCEPSEEQLAISLKISRAELRSRVIEC----SLAREKLAMSNV 545
           K G  LE   T ++E        E +++ L   R + +    E       AREK+     
Sbjct: 136 KEGAKLENLGTSVEE-------NEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYR 195

Query: 546 RLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 605
           RLV+SIA  Y   G  + DL+Q G IGLLRG E+FD  +G+K+STYVYWWI+Q + RA+ 
Sbjct: 196 RLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIA 255

Query: 606 ENSRTLRLPTHLHERLGLIRNAKVRLQEK-GITPSLDRIAESLNMSKKKVKNATEAISKV 665
             SR ++LP  + E    +  A   L  K    PS + IAE LN++   V+ A E     
Sbjct: 256 HKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSP 315

Query: 666 FSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKAEVNELINITLGDREREI 725
            SLDR A  +     G      I     E  P        +K E+ +L+  +L  RE  +
Sbjct: 316 VSLDRVASQN-----GRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLG-SLTARESRV 375

Query: 726 IRLYHGLDNEC-LTWEEISKRIGLSRERVRQVGLVALEKLK 761
           + LY GL+ E  +++EEI K + LSRERVRQ+  +AL+KL+
Sbjct: 376 LGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403

The following BLAST results are available for this feature:

BLAST of ClCG02G007910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902049.1	4.7e-273	96.86	RNA polymerase sigma factor sigA [Benincasa hispida]	[more]
XP_016902935.1	2.2e-270	95.87	PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA pol...	[more]
XP_022148631.1	1.5e-263	93.31	RNA polymerase sigma factor sigA [Momordica charantia] >XP_022148632.1 RNA polym...	[more]
XP_023533104.1	1.7e-262	92.91	RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105...	[more]
KAG6605170.1	2.9e-262	92.91	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of ClCG02G007910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24629	1.4e-190	69.38	RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV...	[more]
Q0J7T6	2.3e-129	50.47	RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIG...	[more]
P38023	1.7e-39	35.05	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P26683	4.9e-39	33.94	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
O22056	1.1e-38	36.22	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]

BLAST of ClCG02G007910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BME8	1.1e-270	95.87	RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E4N5	1.1e-270	95.87	RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV...	[more]
A0A6J1D604	7.3e-264	93.31	RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 ...	[more]
A0A0A0LQR2	1.8e-262	93.71	RNA_pol_sigma70 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G43...	[more]
A0A6J1KWY7	9.0e-262	92.72	RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC11149952...	[more]

BLAST of ClCG02G007910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64860.1	9.7e-192	69.38	sigma factor A	[more]
AT1G64860.2	3.0e-177	68.26	sigma factor A	[more]
AT1G08540.1	7.7e-40	36.22	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	4.0e-36	32.59	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	3.7e-34	33.14	sigma factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 584..592 score: 64.52 coord: 713..725 score: 37.22 coord: 748..759 score: 46.67 coord: 560..573 score: 49.68 coord: 733..748 score: 48.75
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 560..573
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 712..761 e-value: 2.7E-10 score: 39.6
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 538..605 e-value: 2.8E-16 score: 59.1
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 342..606 e-value: 8.0E-33 score: 116.4
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 269..775
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 269..775
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 702..760 e-value: 2.01223E-8 score: 49.025
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 159..230 e-value: 7.9208E-21 score: 87.1385
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 616..686 e-value: 6.2E-11 score: 42.2
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 82..154 e-value: 1.7E-20 score: 73.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 691..769 e-value: 3.3E-20 score: 73.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 607..657 e-value: 1.0E-6 score: 30.7
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 532..762 e-value: 2.1E-25 score: 87.2
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 608..664
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 689..765
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 459..606

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G007910.2	ClCG02G007910.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0071461	cellular response to redox state
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity