ClCG02G007330 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G007330
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Location	CG_Chr02: 8515569 .. 8516535 (-)
RNA-Seq Expression	ClCG02G007330
Synteny	ClCG02G007330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTATTCGGCAGGCGTGGTTATTGGCAAGAACTTATTAAATCCATCGTTTGGACTCATAAGAAATTCAAAGTTGCTCCTGCTACTCAACCATTAGCCTTGAGCACTGTCCAAAGACGTGCCGTAGAAGTAACCCATTACTTTCATCGTTATGTTGTTTTTCTTTGGATTTGGATTTTTGATTTGGGTTTATGTTTTTCCTTTAGTTGAGGGTTTTTGTTTTGCATTAGATTTCGTTCTTGTTGGTTAACAATAGTTGTGGTTGATGCCTTCCATAATTGCATTCTTCTTTCTTTTAATCTCAATTTTTTTTTTCTAAATTTGTTATTTGATGCATGTCATAGTTGTAGTTGAATTCGTTCTTGCCGATTAACAATGGTTTATTTGCTTAACTCTATTTGTGATTTAATTGGTTGTACACACAATTTAAATGTAAGTGAAAACAACTGGTTTTTACTATTTTCGATGGTAAATCATAAAGCATAAAAGAAAACATTATATAAAAACAAAAATTATAGAATCGTACAAGAGAGACTACCATTATATGATTAAAGTTTATCAATGATATCCTTCTATTAGGCTAAAGTATATTAATCCTAGAAAGGCTCTCATTCACAAGCTCTTGCATCATTCAACTTATTACTAAGTTATTGGGATAAATATCTGTTAGGATTCATATACCAATTATGATTTGCTTCTTTTCTTCTTATTATCTGTTATTAATAATCATTTAGCACTTGGCCAATAATGAGGCTTTTAATAATCATAATGACACTAGTGCTATGTGAAAAAGTTATAATCTGACTCGTCACTCAAATACGTATGTTAAACAAAAAGCACAGACAAGCCCTATAACAACTAACAAACTAAAAACAAGTAAAAGAGTAATTGCACTCAGGAGTTGGTAACCCAGTTTGACAATAAAGCACTTACATCTAGGGGGCAGTGTGCCAAGGAAAAATAA

mRNA sequence

ATGTTTCTATTCGGCAGGCGTGGTTATTGGCAAGAACTTATTAAATCCATCGTTTGGACTCATAAGAAATTCAAAGTTGCTCCTGCTACTCAACCATTAGCCTTGAGCACTGTCCAAAGACGTGCCGTAGAAGAGTTGGTAACCCAGTTTGACAATAAAGCACTTACATCTAGGGGGCAGTGTGCCAAGGAAAAATAA

Coding sequence (CDS)

ATGTTTCTATTCGGCAGGCGTGGTTATTGGCAAGAACTTATTAAATCCATCGTTTGGACTCATAAGAAATTCAAAGTTGCTCCTGCTACTCAACCATTAGCCTTGAGCACTGTCCAAAGACGTGCCGTAGAAGAGTTGGTAACCCAGTTTGACAATAAAGCACTTACATCTAGGGGGCAGTGTGCCAAGGAAAAATAA

Protein sequence

MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQCAKEK

Homology

[Close]

BLAST of ClCG02G007330 vs. NCBI nr
Match: CAC87909.1 (photosystem1 subunit A, partial [Enkianthus chinensis])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT 49
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV EL+T
Sbjct: 674 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGELIT 721

[Close]

BLAST of ClCG02G007330 vs. NCBI nr
Match: KYP77019.1 (Photosystem I P700 chlorophyll a apoprotein A1 [Cajanus cajan])

HSP 1 Score: 74.7 bits (182), Expect = 3.3e-10
Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQ 60
           MFLF RRGYWQELI+SIVW H K KVAPATQP ALS VQ RAV   VT +    + S+  
Sbjct: 214 MFLFSRRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVG--VTHYLLGGILSKNY 273

Query: 61  CAK 64
           C +
Sbjct: 274 CCR 274

[Close]

BLAST of ClCG02G007330 vs. NCBI nr
Match: CAD6238947.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELIKSIVW H KFKVAPATQP ALS +Q RAV
Sbjct: 490 MFLFSGRGYWQELIKSIVWAHNKFKVAPATQPRALSIIQGRAV 532

[Close]

BLAST of ClCG02G007330 vs. NCBI nr
Match: CAC87921.1 (photosystem1 subunit A, partial [Platanus racemosa])

HSP 1 Score: 73.6 bits (179), Expect = 7.3e-10
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT 49
           MFLF  RGYWQELI+SIVW H K KVAPA QP ALS VQ RAV EL+T
Sbjct: 675 MFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIVQGRAVGELIT 722

[Close]

BLAST of ClCG02G007330 vs. NCBI nr
Match: YP_009768918.1 (photosystem I P700 chlorophyll a apoprotein A1 [Arapatiella psilophylla] >QIS99536.1 photosystem I P700 chlorophyll a apoprotein A1 [Arapatiella psilophylla])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H KFKVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKFKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. ExPASy Swiss-Prot
Match: Q3V534 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-12
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. ExPASy Swiss-Prot
Match: A4QJB5 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=434059 GN=psaA PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-12
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. ExPASy Swiss-Prot
Match: A4QJJ9 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=72657 GN=psaA PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-12
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. ExPASy Swiss-Prot
Match: Q70Y03 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 GN=psaA PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-12
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. ExPASy Swiss-Prot
Match: A4QK18 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psaA PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-12
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. ExPASy TrEMBL
Match: Q8M9S0 (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Enkianthus chinensis OX=171226 GN=psaA PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT 49
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS VQ RAV EL+T
Sbjct: 674 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGELIT 721

[Close]

BLAST of ClCG02G007330 vs. ExPASy TrEMBL
Match: A0A151UCK8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cajanus cajan OX=3821 GN=KK1_021284 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVTQFDNKALTSRGQ 60
           MFLF RRGYWQELI+SIVW H K KVAPATQP ALS VQ RAV   VT +    + S+  
Sbjct: 214 MFLFSRRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVG--VTHYLLGGILSKNY 273

Query: 61  CAK 64
           C +
Sbjct: 274 CCR 274

[Close]

BLAST of ClCG02G007330 vs. ExPASy TrEMBL
Match: Q8M944 (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Platanus racemosa OX=111540 GN=psaA PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAVEELVT 49
           MFLF  RGYWQELI+SIVW H K KVAPA QP ALS VQ RAV EL+T
Sbjct: 675 MFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIVQGRAVGELIT 722

[Close]

BLAST of ClCG02G007330 vs. ExPASy TrEMBL
Match: H2FBJ2 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Eucharis grandiflora OX=44989 GN=psaA PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H KFKVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKFKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. ExPASy TrEMBL
Match: A0A7L8HZ04 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Hippeastrum rutilum OX=214526 GN=psaA PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H KFKVAPATQP ALS VQ RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKFKVAPATQPRALSIVQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-13
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAPATQPLALSTVQRRAV 44
           MFLF  RGYWQELI+SIVW H K KVAPATQP ALS +Q RAV
Sbjct: 683 MFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIIQGRAV 725

[Close]

BLAST of ClCG02G007330 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 43.9 bits (102), Expect = 5.7e-05
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 1   MFLFGRRGYWQELIKSIVWTHKKFKVAP----ATQPLALSTVQRRAV 44
           MFL   RGYWQELI+++ W H++  +A       +P+ALS VQ R V
Sbjct: 662 MFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLV 708

The following BLAST results are available for this feature:

BLAST of ClCG02G007330 vs. NCBI nr


Match Name	E-value	Identity	Description
CAC87909.1	1.5e-10	77.08	photosystem1 subunit A, partial [Enkianthus chinensis]	[more]
KYP77019.1	3.3e-10	61.90	Photosystem I P700 chlorophyll a apoprotein A1 [Cajanus cajan]	[more]
CAD6238947.1	5.6e-10	81.40	unnamed protein product [Miscanthus lutarioriparius]	[more]
CAC87921.1	7.3e-10	75.00	photosystem1 subunit A, partial [Platanus racemosa]	[more]
YP_009768918.1	1.2e-09	81.40	photosystem I P700 chlorophyll a apoprotein A1 [Arapatiella psilophylla] >QIS995...	[more]

BLAST of ClCG02G007330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V534	8.1e-12	79.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus OX=4465 GN=psaA...	[more]
A4QJB5	8.1e-12	79.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema cordifolium OX=4340...	[more]
A4QJJ9	8.1e-12	79.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Aethionema grandiflorum OX=726...	[more]
Q70Y03	8.1e-12	79.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda OX=13333 ...	[more]
A4QK18	8.1e-12	79.07	Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta OX=78191 GN=psa...	[more]

BLAST of ClCG02G007330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q8M9S0	7.1e-11	77.08	Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Enkianthus chinensi...	[more]
A0A151UCK8	1.6e-10	61.90	Photosystem I P700 chlorophyll a apoprotein A1 OS=Cajanus cajan OX=3821 GN=KK1_0...	[more]
Q8M944	3.5e-10	75.00	Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Platanus racemosa O...	[more]
H2FBJ2	6.0e-10	81.40	Photosystem I P700 chlorophyll a apoprotein A1 OS=Eucharis grandiflora OX=44989 ...	[more]
A0A7L8HZ04	6.0e-10	81.40	Photosystem I P700 chlorophyll a apoprotein A1 OS=Hippeastrum rutilum OX=214526 ...	[more]

BLAST of ClCG02G007330 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00350.1	7.5e-13	76.74	Photosystem I, PsaA/PsaB protein	[more]
ATCG00340.1	5.7e-05	46.81	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..50 e-value: 1.2E-17 score: 64.9
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 1..43
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 1..44 e-value: 2.5E-16 score: 59.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G007330.1	ClCG02G007330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding