ClCG02G007150 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G007150
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTubulin alpha-1B chain
LocationCG_Chr02: 8210601 .. 8212504 (-)
RNA-Seq ExpressionClCG02G007150
SyntenyClCG02G007150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTAAGGGACTAAATTCGTTTGGAACTCAGTGACGTCTACATTCAGAGCTCCATCGAACCGTAGAGAGGCTGTCAAGGACGAAATCACCTGAACATCATTTCAAAGAAACAGTAGTCCATGATAAAATTTGTTAGATTAGTCAAGTTCATCATTTGAAAGTAAAGGTGCCAAAAATTAAAGATCAAAATGATATTTTAACCAATTTGTCACCACAACATTCAAGAAAATGAAAGGCAGTTAATATGTACCTGAGAGATGAGACGGTTGAGGTTTGTGTATGTTGGTCGCTCAATGTCAAGGGAGCGTCTACAGATGTCATAAATGGCCTCATTGTCAAGAAGCACAGAAACATCTGTATGTTCAAGGAGGGAATGGGTTGAAAGAACACTGTTGTAAGGTTCAACAACAGAGGTGGAAACTTGTGGAGAGGGATAAACAGTGAAACCAAGCTTTGATTTCTTGCCATAGTCAACAGACAAACGCTCCAAAAGGAGGGAGCCAAGACCAGATCCAGTACCCCCACCAACAGCGTTAAACACCAGGAAGCCTTGAAGTCCAGTGCAGTTGTCAGCGAGCTTTCTAATGCGATCCAAACAGAGATCAACAATCTCCTTGCCAACTGAAACACAAGTTTTTCCAATTATCATTACACAGTTCATGAAAAAACACCATGGTATACGTTCAAAATATTGATTGAATTAGCTTATACGAATGTGACAATTTGAGATGCTTACTGGTGTAATGGCCACGAGCAAAGTTGTTGGCAGCATCTTCTTTGCCGCTGATTAGCTGTTCAGGATGGAACAATTGGCGATACATTCCAGTCCTCACCTCATCAATGACAGTAGGCTCGAGATCAACAAAAACAGCACGAGGAACATGCTTGCCTGCACCTGTTTCACTGAAGAAGGTGTTGAAGGCATCATCGCCTCCAGCTACAGTTGTGTCACTCGGCATTCGACCATCAGGCTGAAATACAGATGAAAAAATTTAGACAAGATAAAAATATCCCTCAACATGTCTGATATATCCATCTATATATATATTTATATATCTATAAATCAAGGATATCTCCAACATTTTTTATAAATGCTCTTAAAACATGAAAAACCTTATCTACTTAGACTAAATATAAATAGAAATATTAATAACAATGTTCATAACTTAGTTTGGGAGAAAAAACAAAAAAAAAAAAATTCATCTAACTAAAATTTATAAATTTAGCGACTTATAAGAACTATATGTTGATAATCAATATTTTATATTTTCATATTGATATAAACATTGAAATTTTATCCTTGGACAGCATGAAACTCAAATTTGGAATTCATTACAATTCTCGTGGAAAAAAGAAAAAGAATAAACATTCGCACACTTGAATTGAATTCCATACCCACATATAATCATTTCAGTTCATTTTTTAATGACGTGAAAGTTCTAAAACTAGAAACTCTAATAAGAAACAGCTAACTATTTTCACAAATATCAATCAGATCTCAGTAGAATTATGA

mRNA sequence

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA

Coding sequence (CDS)

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACGTCCTTCGGAACAACATCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCAGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA

Protein sequence

MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL
Homology
BLAST of ClCG02G007150 vs. NCBI nr
Match: OQS04464.1 (hypothetical protein THRCLA_03304 [Thraustotheca clavata])

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-32
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG
Sbjct: 314 VVNTREHFSNSTGVGDHAASTLDTSKITAWNHGWRFVVDTTLETSRAPVHKLNGTLGLDG 373

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            NS ID+LR++I+++HQT+SHV  MA I L HH + +E A+ D  +RELFMV L   +HR
Sbjct: 374 GNSSIDILRDDITTVHQTSSHVFTMAWITLSHHRKRIEAAICDFSHRELFMVSLFSTNHR 433

Query: 121 GIGGKHEVDSWI 133
            +  +HE+D+W+
Sbjct: 434 SVRAQHEMDTWV 445

BLAST of ClCG02G007150 vs. NCBI nr
Match: CAD2221797.1 (hypothetical protein, conserved [Angomonas deanei])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

BLAST of ClCG02G007150 vs. NCBI nr
Match: EPY42742.1 (hypothetical protein AGDE_01181 [Angomonas deanei] >EPY42926.1 hypothetical protein AGDE_00997 [Angomonas deanei])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

BLAST of ClCG02G007150 vs. NCBI nr
Match: EPY32002.1 (hypothetical protein STCU_03026 [Strigomonas culicis] >EPY35739.1 hypothetical protein STCU_00936 [Strigomonas culicis])

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 66/130 (50.77%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL   GRVG+H H  LHLG+V A +    LVV+A LE  G P+ ELD ALG DG
Sbjct: 86  VVDAGEHLGDRGRVGNHAHGALHLGEVAAGHDGGGLVVDAALEAGGRPVDELDGALGLDG 145

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +AG+ALG H   LE  VGDLR+ +L +V LL  D  
Sbjct: 146 RDGGVDVLGDDITAVHEAARHVLAVAGVALGQHASGLEDGVGDLRHGQLLVVRLLRGDDG 205

Query: 121 GIGGKHEVDS 131
            + G+HEVD+
Sbjct: 206 RVAGQHEVDA 215

BLAST of ClCG02G007150 vs. NCBI nr
Match: KAF3846725.1 (hypothetical protein F7725_003803, partial [Dissostichus mawsoni])

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 62/130 (47.69%), Postives = 87/130 (66.92%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A   L   G V  H H PLHLG+V++RNH   LVV+A LE SG P+H+LD ALGFDG
Sbjct: 65  VVQASPGLCDGGGVAQHAHGPLHLGQVSSRNHGRGLVVDAHLEASGTPVHKLDGALGFDG 124

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            +  +D+  ++I ++ + A HVL + G+A      WLE  VGD+ +R+L +VGLLC D+ 
Sbjct: 125 GDGRVDIFGHHIPTVQEAAGHVLAVTGVAFHQLVGWLETGVGDVSHRQLLVVGLLCGDNW 184

Query: 121 GIGGKHEVDS 131
           G+GG+ EVD+
Sbjct: 185 GVGGQREVDT 194

BLAST of ClCG02G007150 vs. ExPASy TrEMBL
Match: A0A1W0A2F7 (Uncharacterized protein OS=Thraustotheca clavata OX=74557 GN=THRCLA_03304 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG
Sbjct: 314 VVNTREHFSNSTGVGDHAASTLDTSKITAWNHGWRFVVDTTLETSRAPVHKLNGTLGLDG 373

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            NS ID+LR++I+++HQT+SHV  MA I L HH + +E A+ D  +RELFMV L   +HR
Sbjct: 374 GNSSIDILRDDITTVHQTSSHVFTMAWITLSHHRKRIEAAICDFSHRELFMVSLFSTNHR 433

Query: 121 GIGGKHEVDSWI 133
            +  +HE+D+W+
Sbjct: 434 SVRAQHEMDTWV 445

BLAST of ClCG02G007150 vs. ExPASy TrEMBL
Match: K3X1R8 (Uncharacterized protein OS=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) OX=431595 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V AREH     RV DH H  LH  K+TA  + WRLVV+  LET  AP+HELDRALG D 
Sbjct: 60  VVDAREHFSDGRRVRDHAHGTLHASKITAWYNSWRLVVDTALETRWAPVHELDRALGLDR 119

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            N  I +L ++I+++H+T  HVL +A + LGHH  W + AVGD   R+L +V LL RDH 
Sbjct: 120 GNRSIHILWHDITTVHETRGHVLAVAWVTLGHHRGWFKDAVGDFSDRQLLVVRLLSRDHW 179

Query: 121 GIGGKHEVDSWI 133
            +  +HEVD+W+
Sbjct: 180 RVRAQHEVDTWV 191

BLAST of ClCG02G007150 vs. ExPASy TrEMBL
Match: A0A4W2I559 (Tubulin alpha-1B chain OS=Bos indicus x Bos taurus OX=30522 GN=TUBA1A PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V AR  L  +  V  H H  L+ G+V+AR H  RLVVNA LE SGAP+H+LD  LG DG
Sbjct: 59  VVQARPGLSNSCGVAQHAHSSLYFGQVSARYHSGRLVVNANLEASGAPVHKLDGTLGLDG 118

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            N  ID+  N+I+++ Q A HV PMA +   H   WL+ ++GDL YR+LFMVG L RD R
Sbjct: 119 GNGSIDIFGNHITTVQQAAGHVFPMARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDR 178

Query: 121 GIGGKHEVDSWI 133
           G+ G+ EVD+ I
Sbjct: 179 GVCGQREVDAGI 190

BLAST of ClCG02G007150 vs. ExPASy TrEMBL
Match: A0A7G2CRM3 (Uncharacterized protein OS=Angomonas deanei OX=59799 GN=ADEAN_000933200 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.4e-30
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+DVL ++I+++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

BLAST of ClCG02G007150 vs. ExPASy TrEMBL
Match: J3LSE0 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 70/122 (57.38%), Postives = 86/122 (70.49%), Query Frame = 0

Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A E L  AG VGDH H PLHLG+V A +   RLVV+A LE   AP+ ELD ALG DG
Sbjct: 85  VVNAGEDLDDAGGVGDHAHGPLHLGQVAAGDDAGRLVVDAALEPGRAPVDELDGALGLDG 144

Query: 61  CNSGIDVLRNNISSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            +SG+ VL ++I+++H+ A HVL +A +ALGHHG WLE AVGD    EL MVGLL RDH 
Sbjct: 145 GDSGVHVLGDHITTVHEAACHVLAVARVALGHHGGWLEGAVGDFSDGELLMVGLLGRDHW 204

Query: 121 GI 123
           G+
Sbjct: 205 GV 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OQS04464.14.9e-3250.00hypothetical protein THRCLA_03304 [Thraustotheca clavata][more]
CAD2221797.11.7e-2950.74hypothetical protein, conserved [Angomonas deanei][more]
EPY42742.11.7e-2950.74hypothetical protein AGDE_01181 [Angomonas deanei] >EPY42926.1 hypothetical prot... [more]
EPY32002.11.6e-2750.77hypothetical protein STCU_03026 [Strigomonas culicis] >EPY35739.1 hypothetical p... [more]
KAF3846725.11.6e-2747.69hypothetical protein F7725_003803, partial [Dissostichus mawsoni][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1W0A2F72.4e-3250.00Uncharacterized protein OS=Thraustotheca clavata OX=74557 GN=THRCLA_03304 PE=4 S... [more]
K3X1R81.7e-3050.00Uncharacterized protein OS=Globisporangium ultimum (strain ATCC 200006 / CBS 805... [more]
A0A4W2I5593.8e-3050.76Tubulin alpha-1B chain OS=Bos indicus x Bos taurus OX=30522 GN=TUBA1A PE=3 SV=1[more]
A0A7G2CRM38.4e-3050.74Uncharacterized protein OS=Angomonas deanei OX=59799 GN=ADEAN_000933200 PE=4 SV=... [more]
J3LSE01.4e-2957.38Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36527OS01G0282866 PROTEINcoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G007150.1ClCG02G007150.1mRNA