ClCG02G006030 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G006030
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	40S ribosomal protein S16
Location	CG_Chr02: 6679642 .. 6680079 (-)
RNA-Seq Expression	ClCG02G006030
Synteny	ClCG02G006030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTCCGCCGATTGAGTCGGTTCAGTGTTTCGGCCGGAAAAAGACGGCGGTGGCAGTTACCTACTGCAAGCGCGGTAGGGGTTTGATTAAGATCAATGGCTGCCCAATCGAACTGGTGGAGCCGGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGACACAGGTTCTCTGGTGTCGATATGCGTATTAGAGTAAAGGGTGGAGGTCACACGTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAAATCAAAGACATTCTGGTCAGGTACGACAGGACTTTACTCGTCGCTGATCCCCGACGCTGCGAGCCGAAGAAGTTCGGTGGTCGTGGAGCACGTGCCAGGTTCCAGAAATCTTACCGTTGA

mRNA sequence

ATGGCATCTCCGCCGATTGAGTCGGTTCAGTGTTTCGGCCGGAAAAAGACGGCGGTGGCAGTTACCTACTGCAAGCGCGGTAGGGGTTTGATTAAGATCAATGGCTGCCCAATCGAACTGGTGGAGCCGGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGACACAGGTTCTCTGGTGTCGATATGCGTATTAGAGTAAAGGGTGGAGGTCACACGTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAAATCAAAGACATTCTGGTCAGGTACGACAGGACTTTACTCGTCGCTGATCCCCGACGCTGCGAGCCGAAGAAGTTCGGTGGTCGTGGAGCACGTGCCAGGTTCCAGAAATCTTACCGTTGA

Coding sequence (CDS)

ATGGCATCTCCGCCGATTGAGTCGGTTCAGTGTTTCGGCCGGAAAAAGACGGCGGTGGCAGTTACCTACTGCAAGCGCGGTAGGGGTTTGATTAAGATCAATGGCTGCCCAATCGAACTGGTGGAGCCGGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGACACAGGTTCTCTGGTGTCGATATGCGTATTAGAGTAAAGGGTGGAGGTCACACGTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAAATCAAAGACATTCTGGTCAGGTACGACAGGACTTTACTCGTCGCTGATCCCCGACGCTGCGAGCCGAAGAAGTTCGGTGGTCGTGGAGCACGTGCCAGGTTCCAGAAATCTTACCGTTGA

Protein sequence

MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR

Homology

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BLAST of ClCG02G006030 vs. NCBI nr
Match: XP_012066736.1 (40S ribosomal protein S16 [Jatropha curcas] >KDP42492.1 hypothetical protein JCGZ_00289 [Jatropha curcas] >KDP42493.1 hypothetical protein JCGZ_00290 [Jatropha curcas])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+ PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MAAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

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BLAST of ClCG02G006030 vs. NCBI nr
Match: XP_007226006.1 (40S ribosomal protein S16 [Prunus persica] >XP_008222957.1 PREDICTED: 40S ribosomal protein S16 [Prunus mume] >XP_021830146.1 40S ribosomal protein S16-like [Prunus avium] >XP_034209058.1 40S ribosomal protein S16-like [Prunus dulcis] >CAB4262948.1 unnamed protein product [Prunus armeniaca] >ONI28680.1 hypothetical protein PRUPE_1G154800 [Prunus persica] >ONI28681.1 hypothetical protein PRUPE_1G154800 [Prunus persica] >ONI28682.1 hypothetical protein PRUPE_1G154800 [Prunus persica] >CAB4293481.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MATPAIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

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BLAST of ClCG02G006030 vs. NCBI nr
Match: XP_007201870.1 (40S ribosomal protein S16 [Prunus persica] >XP_010107915.1 40S ribosomal protein S16 [Morus notabilis] >XP_021830486.1 40S ribosomal protein S16 [Prunus avium] >EXC17315.1 40S ribosomal protein S16 [Morus notabilis] >ONH91665.1 hypothetical protein PRUPE_8G128300 [Prunus persica])

HSP 1 Score: 288.5 bits (737), Expect = 3.2e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MAAPAIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

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BLAST of ClCG02G006030 vs. NCBI nr
Match: XP_030975403.1 (40S ribosomal protein S16 [Quercus lobata])

HSP 1 Score: 288.1 bits (736), Expect = 4.2e-74
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P +ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MATPAVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

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BLAST of ClCG02G006030 vs. NCBI nr
Match: KAB1208512.1 (40S ribosomal protein S16 [Morella rubra] >KAB1208513.1 40S ribosomal protein S16 [Morella rubra] >KAB1208514.1 40S ribosomal protein S16 [Morella rubra])

HSP 1 Score: 288.1 bits (736), Expect = 4.2e-74
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+ P+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MATAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

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BLAST of ClCG02G006030 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.2e-73
Identity = 137/145 (94.48%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA   IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR 
Sbjct: 1   MAEKAIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQ 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLV
Sbjct: 61  RFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

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BLAST of ClCG02G006030 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.8e-70
Identity = 128/145 (88.28%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

[Close]

BLAST of ClCG02G006030 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.2e-69
Identity = 125/142 (88.03%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 4   PPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 63
           P  ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+
Sbjct: 5   PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFA 64

Query: 64  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 123
           GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65  GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124

Query: 124 RRCEPKKFGGRGARARFQKSYR 146
           RRCEPKKFGGRGAR+R+QKSYR
Sbjct: 125 RRCEPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of ClCG02G006030 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-69
Identity = 124/142 (87.32%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 4   PPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 63
           P  ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+
Sbjct: 5   PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFA 64

Query: 64  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 123
           GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65  GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124

Query: 124 RRCEPKKFGGRGARARFQKSYR 146
           RRCEPKKFGGRGAR+R+QKSYR
Sbjct: 125 RRCEPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of ClCG02G006030 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-65
Identity = 121/140 (86.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 6   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 65
           +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+GV
Sbjct: 4   VESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGV 63

Query: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 125
           DMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRR
Sbjct: 64  DMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRR 123

Query: 126 CEPKKFGGRGARARFQKSYR 146
           CEPKKFGGRGAR+RFQKSYR
Sbjct: 124 CEPKKFGGRGARSRFQKSYR 142

[Close]

BLAST of ClCG02G006030 vs. ExPASy TrEMBL
Match: M5VPA5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G128300 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MAAPAIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of ClCG02G006030 vs. ExPASy TrEMBL
Match: M5Y5M9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G154800 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MATPAIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of ClCG02G006030 vs. ExPASy TrEMBL
Match: A0A6J5VZS7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS2434 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MATPAIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of ClCG02G006030 vs. ExPASy TrEMBL
Match: A0A067L229 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00289 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+ PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MAAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of ClCG02G006030 vs. ExPASy TrEMBL
Match: A0A5E4GE70 (PREDICTED: 40S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B002787 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.6e-74
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASPPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA+P IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH
Sbjct: 1   MATPAIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV
Sbjct: 61  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 146
           ADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of ClCG02G006030 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-70
Identity = 125/142 (88.03%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 4   PPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 63
           P  ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+
Sbjct: 5   PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFA 64

Query: 64  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 123
           GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65  GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124

Query: 124 RRCEPKKFGGRGARARFQKSYR 146
           RRCEPKKFGGRGAR+R+QKSYR
Sbjct: 125 RRCEPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of ClCG02G006030 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-70
Identity = 124/142 (87.32%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 4   PPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 63
           P  ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+
Sbjct: 5   PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFA 64

Query: 64  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 123
           GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65  GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124

Query: 124 RRCEPKKFGGRGARARFQKSYR 146
           RRCEPKKFGGRGAR+R+QKSYR
Sbjct: 125 RRCEPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of ClCG02G006030 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-66
Identity = 119/142 (83.80%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 4   PPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 63
           P  ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+
Sbjct: 5   PAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFA 64

Query: 64  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 123
           GVDMRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADP
Sbjct: 65  GVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADP 124

Query: 124 RRCEPKKFGGRGARARFQKSYR 146
           RRCE KKFGG GARARFQKSYR
Sbjct: 125 RRCESKKFGGPGARARFQKSYR 146

[Close]

BLAST of ClCG02G006030 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-60
Identity = 109/128 (85.16%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 4   PPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 63
           P  ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+
Sbjct: 5   PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFA 64

Query: 64  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 123
           GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADP
Sbjct: 65  GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124

Query: 124 RRCEPKKF 132
           RRCE  +F
Sbjct: 125 RRCELFRF 132

[Close]

BLAST of ClCG02G006030 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-51
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 4   PPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 63
           P  ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+
Sbjct: 5   PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFA 64

Query: 64  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 115
           GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct: 65  GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:

BLAST of ClCG02G006030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_012066736.1	3.2e-74	97.93	40S ribosomal protein S16 [Jatropha curcas] >KDP42492.1 hypothetical protein JCG...	[more]
XP_007226006.1	3.2e-74	97.93	40S ribosomal protein S16 [Prunus persica] >XP_008222957.1 PREDICTED: 40S riboso...	[more]
XP_007201870.1	3.2e-74	97.93	40S ribosomal protein S16 [Prunus persica] >XP_010107915.1 40S ribosomal protein...	[more]
XP_030975403.1	4.2e-74	97.24	40S ribosomal protein S16 [Quercus lobata]	[more]
KAB1208512.1	4.2e-74	97.24	40S ribosomal protein S16 [Morella rubra] >KAB1208513.1 40S ribosomal protein S1...	[more]

BLAST of ClCG02G006030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46293	8.2e-73	94.48	40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1	[more]
O22647	3.8e-70	88.28	40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1	[more]
Q9SK22	3.2e-69	88.03	40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1	[more]
Q42340	4.2e-69	87.32	40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1	[more]
Q9XEK7	1.7e-65	86.43	40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1	[more]

BLAST of ClCG02G006030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5VPA5	1.6e-74	97.93	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G128300 PE=3 SV=1	[more]
M5Y5M9	1.6e-74	97.93	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G154800 PE=3 SV=1	[more]
A0A6J5VZS7	1.6e-74	97.93	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS2434 PE=3 SV...	[more]
A0A067L229	1.6e-74	97.93	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00289 PE=3 SV=1	[more]
A0A5E4GE70	1.6e-74	97.93	PREDICTED: 40S ribosomal OS=Prunus dulcis OX=3755 GN=ALMOND_2B002787 PE=3 SV=1	[more]

BLAST of ClCG02G006030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G09990.1	2.3e-70	88.03	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	3.0e-70	87.32	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	4.5e-66	83.80	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.2	1.6e-60	85.16	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.3	1.1e-51	84.68	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 13..145 e-value: 2.6E-31 score: 108.6
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 4..145
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 2..145 e-value: 1.8E-54 score: 185.9
None	No IPR available	PANTHER	PTHR21569:SF28	SUBFAMILY NOT NAMED	coord: 4..145
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 73..91
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 8..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G006030.1	ClCG02G006030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome