ClCG02G005540 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G005540
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	cytochrome b6f complex subunit (petM), putative
Location	CG_Chr02: 6046773 .. 6052130 (-)
RNA-Seq Expression	ClCG02G005540
Synteny	ClCG02G005540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTTGAAGTTGGCTGCAGGTGGTGGTTATCGGAGGTGGTCACTGGAGTTGGTTGTTAGAGGGATTGCCAAATTTGTCGATGGTGAGGAGGGTTGAGTACAATTTTGGTGGACATGGTATAAAATATTGGTGACATATGAAGTTGGTCTCCCAAACAATGAGTTTAGTTCATATCTCAACTCATCTATCTCCTCAGCCCAAACATACTCTTAAATTTATTCCCTCAAAGTTAATTATTATCAAAATTGGCTACATAGTAATAATAATTTTCATATAAAGAAATACAATATAATAAAAAAGAAATATGTTCTCAAAATTAATAGTGAGATTTCTAATAGAAAAGATTTTTTTTTTTAATAACAAAAAAAATAAACAAATTAGTATATACGGACAAAATTTAAGATTTATTAAAAATATATAAATTAAAATTAGACAATTAAAAATAAAGAAATTAAAATTAAAATTTTAAAAATACATAGACTAAAATTGAAATACCAAAAAAAGTATTTTAACCCATACTTAATTATAATTGAGGTTTCGTATAATTAATTAATTTTGTAGTTTGCCGTTGTGCAATTTCAGATATTTCGTGTAATCCATTAAAATTACCCTATAATAAGAGAGAGAGGAAATCCGAAAATTTTAATGAGATGGAAAAAGAAAAAGACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGAAAATGGAATATGAACAAACACATACGGTAAACTGTGATATTTTGGAATATGAACACACTGTTGTTATTATATGTATTTGTTTCAGTGAAAATGGAATATGAACAAACACATACGGTAATAGAAAATATTACATTTTTTTTTTCTTTTATGGTGTTTGAAAACATAAATATGTCAAACTAGTACGTAGATTTTGAAGTGTAAATATTAATAGAATTAAAAAAATTGTATTTTCTTAAAAATATAATAGTTTAATTAATAGTTATAAGAGCGATTTTTAAATATAGAAAATTGAACCAAAATATTTATAAATATAGTAAATTTTTACCGTCTATTTGCGATAGACTACTATCTGTGTCTGTCTTGATAGACACAAATAGTAGTCTATCACAATTTATCGGGTGTATCACAGATAAACTGTGATATTTTGTCATTATTTGTAAATATTTTTAACAATTTTGTCATTTAAAATACTTTTCCTAGTTTTAAACTTTTTTAAAAAAATTCAAAACTGGCCTGGAACTATTGATTCTTTATTTTAAAAATATTCTAAAACTTTCCGAAGTTACAATAATAACCTTAATATTTCTAAATAAAAGTTAAAATAAAAGCTCTTATTGTCATTAATATCCATCACTTCTCTTTCATATTTTCATTTTTTCTCTATTTCCTCTAGTTTTAGATTTTCCCTATCTTCTTCAATGACCATCTCCTTGTATTTTGGGCCTAAAAGATCTTTCAGATCAGGGCATGCGTAAAACATGCCCGATTAGGCGTTTGATAAGTCTTGAGCTTGGCCTTGGCCAAGTACACTGGCTTGGGCCTATCCTTGGCCCAATTTGGTTCTAAGTTGCCATTTCGGTCCATATCATGCTCTCTTATTGATTTTGTCTATCCTATTTGCCCTAGATGTCAATTATAGCCTTTGGTCTAAATTCACTTGTAACACTAATTATGATGAATTAAAAATATAACCAACCAATTTTTACTTATAAAACAAGAAAAAGATAATTTTTAGCTCTAAGTTTGTCAAGTTGTATATAATTCTATTTTAATATTTTTATTTCCTCAAATTATACCCCAAACGTAGACAAGTATTGCACTGTTAACCTTAAATTTAAAAAGTGTTGCAATTTCTATCCTCCAATAAGTTTTATTTTAAAAATTTGTTAAAAGAAGTGGTATGATGTGATTTCAATGAATTATAAAAATTAATATTATATTACTATTTATTAAAGTTAGTGAAATTCAATAGAGGGTATAAATTGTAACATTTAACTAAGTCAATGCCTAATTTGATGAAATAAAAAATAAAAAATTGATTTTTTACCTGTGATAAACATATACCAAATTAATGCAATAGTATATTTATTGAAGCTATTAATAAATTAGTAATAGATTAAATATATTTAACTAATAGGTATAATCTAGTATAAAAATTTTAGTTCTTTTATAATTATTTATTAAATTAAAACTATACATCGTATAATCCATTCATTTAGATCTATTTGTTCAATAATTAATACATCATAATTATTTAAAATTTATAAAATTAATATTATAAAAATATAAAAAATATCATTTATTATTATAATGATTAGTATTCCCAAGTGTAAAGCCAAATACAACAATATATGATTTTTTTAAAAAAAAAAAACACCAATATACGATTTTCAACAATTTTATTCTCAAATATCTATAGTATGTAGAGATATTTGTGTACTTTTTGCGTTCATCCCTGTGCACTTATAGAAAGATTTTGAAATTTTCAATTTTTGTATATAGAGAGTAGAATAAAAAAACGTACACAAATATTATATTTATAAATATAGCAAAATTTAACGGTCTATCTGTAATAGACTGCGATAGATGGTATATTTTGTTATTAGTTGTAAATTTTTCAACAATTTGGACATTTAAGATAATTTCCCTACTAACATACTAGAGATAGTTTTTAAAATTGTACACCCCGATGATGGCAAGTTTAGGAGTGGGCCCTAAATTCTTTATAACAAAAAGATATATATCTACGTATATGCACACACATGTTATTTTTATACATTAAACACACTTATAAAAATGAGGAAATAATAAGGTAATTACGGTGGGTAGTACTTTTAAAGTTAATAATTAAGTGTATAACATATTTTTTAAAAAATTATAAATATAGCAAAATCTATCAGCGATATAGTTTATCACTAATAGTGATCACTTCAAAAGTTAAATTTATATTTTGTTATAACGATAAATTCTTGTACATTATATTATATCTACTAATATTTTGGATCTAATTGCTATATTTGTAATGGTCGGTTTTTACAATTTTTATGGTTTTAGTTTTATTCTTACTTTAGATAGGTTTTATTTTATTTTATTTTTTTGCAAAGGGTGATGGCAATTTTTGGTCCTCACATTTTTATGTGTTAGGAATGGTAATTAAAATTGCTAATGGTTTTCATTTGGAGCAATGTTAAAAATGAAATATATAATTAATTATAAATGACATTTTGTATAAATAAATAAATAATTAATTTTGTAGTTTTCCGCCCAGTAAAATAAGTGAGGGAAAAAAGAAAATGAGAAAGTAGAGGGAAAATCCGAAAATTAAAATGAGATGGAAAAAAGGAAAAACCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACCTTCTTGAAACCATCGATTATAATGTCTGATCTAGTTGCTTCCAAACTAATATTGCCTCCGATTATATAAATTTTTCGTAGAAATTCATGCGGTTCTAGGAAATGTTAATGGTAGATTGTTAGTGAATATTATTAGAACTAAACAAAAAAAGGAAAAAAATTAGGCTAAATTACGGATAACATTATGCATTCCTATAAAAATATTTGTGAATTTTCCATAATTGTATGTATTTGATATTCATTATTTATTTATTTATTTATCTGCATGATGATATCATATTGTCCATTTTGGGTATAACTCTCCTAGCTTTTCTTTTGGTTTCACCCAGAAGGTTTTATACCATCAGAGATAATTATCATCCCTTATAAACGCATGCCCATTCTCTTATTTAACCGATGCGAGACTTTGATCGCTTTCCCTTCCAACACCATCAATAGCATATCGTTGACTTTGATATCTTGGTACACATTGAACCATCAAATCCAAACACAACAAAAATTTGCCTGCTGTTATTAATTAAAATATTGACATCAAATTTTTCTTCATTCCTTGCCCACAAAATACATTCTCTAGCTCCATTTGATCGCAAATTAGAATGAGACTTTATCATAGTTTTGTCAACGTGGGTTATTGACAACTTCGAGTTGTTTGCAATTACGATATCTCGACTTCCTTTGTACTTTGATGTGTTTTGCAACTTCTTATCACTTGTCATGTAGTTAGAGCAACTTCATTCTACACCATTCGACAATTCAATCATTTCATAGTTTACCTATTCTACATGGAGAGTCAACACTTCATTCTACACCGTATTAGATGCCGACTGGGGGTTGGGATCAGATATTGCATAACAATGTCAATGGAGATATTGAGATTTTGATAGAAATTTAAAACCTTATAAATATTGTCTTTAAAAGAACTTTGTCCACTTTTTATAAACGTTGGGCGTTAGAAACTTGTCAATTTCAGTTAAATTGCAAATTTGGTACCTATAGTTTGAATTTAGTCTCTATAATTTAATAAAAGCTCCATGATAGGAACTATTGATGAAACTTTTATCAAGCTATAGAAATTATTTATGAAATTTTATTAAATTATAAAGACTAAATTCTAGTTTCTAAAACTATAGGAACTAAATTCTAAATTTCTCTAAACTACCATTTATTCTATTAATTATCATCCAAAGGTTGAAAAGTTGATAAGTGGAAGCTTCTGTTTATAATTTCCTCCATGCTAATACAATGTTATGCAAGTTTGAAAAATGAAAGATTGTAAGTGGAACAGTATATCACCATTTTTCCTTGGCTAGTATTCAAAGATTTTGAGAAATCTTTAGCAATTCTAATCTGTTTATGAGCCACCCAAATTCCTCTTACCTTATCCATTTCCCCCTTCATCTTTCTCCATACAAACCCCCTTTTTCCCATCCTTCTCATCATCTTCAATTTCCCCCAATTTTCTCTTCCACTCAGGTTCAATCCCTTCTTTCTCCTTCAAAATCCCTTTCCCCATCTGGGTTTTCACTCAATTTGACTCTTCCTTCTCTTCCTCTTCTTTCAGGCATCAATCAATGGCTACAGCCTCCGCTACCCTTTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGTTCAAGGCGGCTGAGGCAAACCAATGTCCATTACATAACTGGGCTTAACTCATTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAGCGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGGGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTCTTCTTCGGATTGAAGCATCTGTGGAGGAGGCAGAATGA

mRNA sequence

ATGCTGTTGAAGTTGGCTGCAGGTGGTGGTTATCGGAGGTGGTCACTGGAGTTGGTTGTTAGAGGGATTGCCAAATTTGTCGATGCCACCCAAATTCCTCTTACCTTATCCATTTCCCCCTTCATCTTTCTCCATACAAACCCCCTTTTTCCCATCCTTCTCATCATCTTCAATTTCCCCCAATTTTCTCTTCCACTCAGGCATCAATCAATGGCTACAGCCTCCGCTACCCTTTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGTTCAAGGCGGCTGAGGCAAACCAATGTCCATTACATAACTGGGCTTAACTCATTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAGCGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGGGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTCTTCTTCGGATTGAAGCATCTGTGGAGGAGGCAGAATGA

Coding sequence (CDS)

ATGCTGTTGAAGTTGGCTGCAGGTGGTGGTTATCGGAGGTGGTCACTGGAGTTGGTTGTTAGAGGGATTGCCAAATTTGTCGATGCCACCCAAATTCCTCTTACCTTATCCATTTCCCCCTTCATCTTTCTCCATACAAACCCCCTTTTTCCCATCCTTCTCATCATCTTCAATTTCCCCCAATTTTCTCTTCCACTCAGGCATCAATCAATGGCTACAGCCTCCGCTACCCTTTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGTTCAAGGCGGCTGAGGCAAACCAATGTCCATTACATAACTGGGCTTAACTCATTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCTAACATTGTGAGCTCTTTGAAATACCCATCAAAGGGAAAAGGCAAAAGCGGCGGTGGAGCTCTTTCTTCCACTTGTAATGCCGCCGGGGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTCTTCTTCGGATTGAAGCATCTGTGGAGGAGGCAGAATGA

Protein sequence

MLLKLAAGGGYRRWSLELVVRGIAKFVDATQIPLTLSISPFIFLHTNPLFPILLIIFNFPQFSLPLRHQSMATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE

Homology

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BLAST of ClCG02G005540 vs. NCBI nr
Match: XP_038887487.1 (uncharacterized protein LOC120077620 [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-55
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 71  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 130
           MATASATLSPAM TAAPIAAGSRR RQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS
Sbjct: 1   MATASATLSPAMPTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 131 FANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 190
           FANI+SSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEAS
Sbjct: 61  FANIMSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 191 VEEAE 196
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of ClCG02G005540 vs. NCBI nr
Match: XP_008454894.1 (PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 2.2e-54
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 71  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 130
           MATASATLS AMSTAAPIAAGSRR RQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS
Sbjct: 1   MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 131 FANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 190
           FA IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEAS
Sbjct: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 191 VEEAE 196
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of ClCG02G005540 vs. NCBI nr
Match: XP_022972366.1 (uncharacterized protein LOC111470941 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 8.4e-54
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 131
           ATASATLSPA+STAAPIAAGSRR R TNVHYITGLNSFGGLKAHNN+ SLGLPVCADQSF
Sbjct: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62

Query: 132 ANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 191
           ANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

Query: 192 EEAE 196
           EEAE
Sbjct: 123 EEAE 126

[Close]

BLAST of ClCG02G005540 vs. NCBI nr
Match: XP_023554105.1 (uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-52
Identity = 116/124 (93.55%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 131
           ATASATLSP +STAAPIAAGSRR R  NVHYITGLNSFGGLKAHNN+ SLGLPVCADQSF
Sbjct: 3   ATASATLSPPISTAAPIAAGSRRQRNANVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62

Query: 132 ANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 191
           ANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

Query: 192 EEAE 196
           EEAE
Sbjct: 123 EEAE 126

[Close]

BLAST of ClCG02G005540 vs. NCBI nr
Match: KAG6572003.1 (Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011679.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 4.6e-52
Identity = 115/124 (92.74%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 131
           AT SATLSP +STAAPIAAGSRR R TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62

Query: 132 ANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 191
           ANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

Query: 192 EEAE 196
           EEAE
Sbjct: 123 EEAE 126

[Close]

BLAST of ClCG02G005540 vs. ExPASy Swiss-Prot
Match: P80883 (Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=petM PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 158 NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE 194
           NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

[Close]

BLAST of ClCG02G005540 vs. ExPASy TrEMBL
Match: A0A0A0K4W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.8e-55
Identity = 127/158 (80.38%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 40  PFIFLHTNPLFPILLIIFNFPQFSLPLRHQS--MATASATLSPAMSTAAPIAAGSRRLRQ 99
           P +FL  NPLFP    +     FSLPL   +  MATASATLS AMS+AAPI+AGSRR RQ
Sbjct: 44  PSLFLPQNPLFPSQFSLNIDSSFSLPLLSGTIPMATASATLSTAMSSAAPISAGSRRQRQ 103

Query: 100 TNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSTC 159
           TN H+I+GLNSF GLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSSTC
Sbjct: 104 TNAHFISGLNSFSGLKAHNNVVSLGLPVCADQSFAKIVSSLKYPSKGKGKNGGGALSSTC 163

Query: 160 NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEEAE 196
           NAAGEIFRIAAIINGLVL+GVAVGFVLLRIEASVEEAE
Sbjct: 164 NAAGEIFRIAAIINGLVLIGVAVGFVLLRIEASVEEAE 201

[Close]

BLAST of ClCG02G005540 vs. ExPASy TrEMBL
Match: A0A1S3C0U4 (uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.1e-54
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 71  MATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 130
           MATASATLS AMSTAAPIAAGSRR RQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS
Sbjct: 1   MATASATLSTAMSTAAPIAAGSRRQRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQS 60

Query: 131 FANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 190
           FA IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVL+GVAVGFVLLRIEAS
Sbjct: 61  FAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 120

Query: 191 VEEAE 196
           VEEAE
Sbjct: 121 VEEAE 125

[Close]

BLAST of ClCG02G005540 vs. ExPASy TrEMBL
Match: A0A6J1I5T0 (uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 4.1e-54
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 131
           ATASATLSPA+STAAPIAAGSRR R TNVHYITGLNSFGGLKAHNN+ SLGLPVCADQSF
Sbjct: 3   ATASATLSPAISTAAPIAAGSRRQRNTNVHYITGLNSFGGLKAHNNIFSLGLPVCADQSF 62

Query: 132 ANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 191
           ANIVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ANIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

Query: 192 EEAE 196
           EEAE
Sbjct: 123 EEAE 126

[Close]

BLAST of ClCG02G005540 vs. ExPASy TrEMBL
Match: A0A6J1GND2 (uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC111455503 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 8.5e-52
Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQSF 131
           AT SATLSP +STAAPIAAGSRR R TNVHYITGLNSF GLKAHNN+ SLGLPVCADQSF
Sbjct: 3   ATPSATLSPPISTAAPIAAGSRRQRNTNVHYITGLNSFSGLKAHNNITSLGLPVCADQSF 62

Query: 132 ANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 191
           A+IVSSLKYPSKGKGK+GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV
Sbjct: 63  ASIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASV 122

Query: 192 EEAE 196
           EEAE
Sbjct: 123 EEAE 126

[Close]

BLAST of ClCG02G005540 vs. ExPASy TrEMBL
Match: A0A6J1C3G5 (uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008007 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.8e-49
Identity = 115/128 (89.84%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 71  MATASATLSPAMSTAAPIAAGSRR-LRQTNVHYITGLNSFGGLKAHNNVVSLGLPVCADQ 130
           MATASATLSPAMSTAAPIAAGSRR  R  NVHYITGLNSFGGLKAHNNVVSLGLP+C D 
Sbjct: 1   MATASATLSPAMSTAAPIAAGSRRSQRHHNVHYITGLNSFGGLKAHNNVVSLGLPLCPDH 60

Query: 131 SFANIVSSLKYPSKGKGKS--GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRI 190
           SFA IVSSLKYPSKGKGK+  GGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRI
Sbjct: 61  SFAKIVSSLKYPSKGKGKNGGGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRI 120

Query: 191 EASVEEAE 196
           EA VEE E
Sbjct: 121 EAYVEETE 128

[Close]

BLAST of ClCG02G005540 vs. TAIR 10
Match: AT2G26500.2 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-28
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQS 131
           A A A +S   S     +  +++  +  V YITGLNS+GGLKA NN VVS+G P+C +Q 
Sbjct: 4   AAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQC 63

Query: 132 FANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 191
           FAN+V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLRIE 
Sbjct: 64  FANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIET 123

Query: 192 SVEEAE 196
           SVEEAE
Sbjct: 124 SVEEAE 123

[Close]

BLAST of ClCG02G005540 vs. TAIR 10
Match: AT2G26500.1 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-28
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQS 131
           A A A +S   S     +  +++  +  V YITGLNS+GGLKA NN VVS+G P+C +Q 
Sbjct: 4   AAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQC 63

Query: 132 FANIVSSLKYPSKGKGKSG-GGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEA 191
           FAN+V SL      KG+ G GGALS+TCNA GEIF+IAAI+N L LVGVAVGFVLLRIE 
Sbjct: 64  FANVVMSL------KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIET 123

Query: 192 SVEEAE 196
           SVEEAE
Sbjct: 124 SVEEAE 123

[Close]

BLAST of ClCG02G005540 vs. TAIR 10
Match: AT2G26500.3 (cytochrome b6f complex subunit (petM), putative )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 50/125 (40.00%), Postives = 61/125 (48.80%), Query Frame = 0


Query: 72  ATASATLSPAMSTAAPIAAGSRRLRQTNVHYITGLNSFGGLKAHNN-VVSLGLPVCADQS 131
           A A A +S   S     +  +++  +  V YITGLNS+GGLKA NN VVS+G P+C +Q 
Sbjct: 4   AAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCTEQC 63

Query: 132 FANIVSSLKYPSKGKGKSGGGALSSTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRIEAS 191
           FAN+V SLK                                     G  VGFVLLRIE S
Sbjct: 64  FANVVMSLK-------------------------------------GRRVGFVLLRIETS 91

Query: 192 VEEAE 196
           VEEAE
Sbjct: 124 VEEAE 91

The following BLAST results are available for this feature:

BLAST of ClCG02G005540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887487.1	4.5e-55	96.00	uncharacterized protein LOC120077620 [Benincasa hispida]	[more]
XP_008454894.1	2.2e-54	96.00	PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]	[more]
XP_022972366.1	8.4e-54	95.16	uncharacterized protein LOC111470941 [Cucurbita maxima]	[more]
XP_023554105.1	1.2e-52	93.55	uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]	[more]
KAG6572003.1	4.6e-52	92.74	Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG02G005540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80883	1.2e-07	83.33	Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea OX=3562 GN=pet...	[more]

BLAST of ClCG02G005540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4W4	4.8e-55	80.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075020 PE=3 SV=1	[more]
A0A1S3C0U4	1.1e-54	96.00	uncharacterized protein LOC103495201 OS=Cucumis melo OX=3656 GN=LOC103495201 PE=...	[more]
A0A6J1I5T0	4.1e-54	95.16	uncharacterized protein LOC111470941 OS=Cucurbita maxima OX=3661 GN=LOC111470941...	[more]
A0A6J1GND2	8.5e-52	91.94	uncharacterized protein LOC111455503 OS=Cucurbita moschata OX=3662 GN=LOC1114555...	[more]
A0A6J1C3G5	8.8e-49	89.84	uncharacterized protein LOC111008007 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

BLAST of ClCG02G005540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26500.2	5.0e-28	59.52	cytochrome b6f complex subunit (petM), putative	[more]
AT2G26500.1	5.0e-28	59.52	cytochrome b6f complex subunit (petM), putative	[more]
AT2G26500.3	1.1e-11	40.00	cytochrome b6f complex subunit (petM), putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012595	PetM of cytochrome b6/f complex subunit 7	PFAM	PF08041	PetM	coord: 161..188 e-value: 3.6E-10 score: 39.2
IPR012595	PetM of cytochrome b6/f complex subunit 7	HAMAP	MF_00396	Cytb6_f_PetM	coord: 159..191 score: 12.774698
None	No IPR available	PANTHER	PTHR34951:SF1	B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED	coord: 38..195
None	No IPR available	PANTHER	PTHR34951	B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED	coord: 38..195
None	No IPR available	SUPERFAMILY	103441	PetM subunit of the cytochrome b6f complex	coord: 160..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G005540.2	ClCG02G005540.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0016021	integral component of membrane