ClCG02G005300 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G005300
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	transcription termination factor MTEF1, chloroplastic
Location	CG_Chr02: 5784755 .. 5786346 (+)
RNA-Seq Expression	ClCG02G005300
Synteny	ClCG02G005300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGGAGCTGCAACTCCATTCACCACCGTCTCTTCCTTCTCTCCCTCCAACGCTCCCACTCCCAGATCTCGCCTTCTTCCTCTTCCATTCATCAACTTCCGCACTGCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCACATCATCGATTCCCGAACCAGATTCCATTCTCCCGATGCCGTCGAGCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCGGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCAACGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCGGTGCCCTAGGATTCTGTTCTCCGACGTCGAGTTATGTCTCCGGCCGACGCATAGATTCTTAAAGCAATTAGGGATAGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCACCTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTAAAGGAGATAGGATTCTCGCAGGAGGAGGCGGCAAAGGTTTGCGGGAGAATGCCGGCGATATTCGGGTACAGTGTGGAGGAGAATTTGTGGCCTAAATATGAGTATTTGGTGAAGGAAATGGAGAGGGATTTGGAGGAATTGAAAGGGTTTCCTCAGTATTTTGGGTTTAGCTTGGAAGGACGAATTATGCCTCGACATTTGCATTTGAAACGAAGGAATCTCCGAATTCCTCTTAATAGAATGCTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGAAACATAAATATTACATGTATTCTTTATAGTTGATCCCTAGACAAGAAGAGATTATAACAATATTTTCTATACAAGAGAGGATTATAACAATCTTTTTTTTTATTATTATTATTTCTATCAAGCTCAAAAAACAAAGTCAACGTCTCTAGACAAACCAAGTCATATGATGAAAGAATAATTCTGCCATTTGAATAGCAAATATTGAATATGCCATGTGGTAGTTATCTGATTAATTTACAAATATTGGTCTAATTGTGAAGAGCAGTAAGTTGAGTAGTTCTCAACAAGAGTCAAAATTATTGGATTGGGTATAAATTTTAGAATTATACCCAAATTTAATCTATAACTTTGAACAATCGAAGTCAGAGGTAGAAAAGGTATGGCGCTCTTCTGAGAAATTGTGGTTGGGAGCACAATTTAAGGAAGTGGAGGGGAATAAATAGTGCACTTTGAATGGATTGGTTTTCATTTCATTTTCGATTAAGCAAATTCAAATACTTGTTGCAAACTTGCACGAATATCTGTGAACTTATAAACAGCAAGCATTATGAAACTTTGCATTTGACGAGGGTATAAAATGCGGGGCTCATCAACACAATCGTCTATTACTCTTGAACAAAAGGGTCCCAGCAGCCTTCTAACCACACCACAGTTCAAACAAGCATCTCAATGAGCTCGGTTTTCTATCTAGTTCAGCTCCGCCGTTGGTATCTCTACCGACTCAATTTGTTGAAACTATGGCGAGAAGTGAAATGCAGAACTAG

mRNA sequence

ATGGCGGTTGGAGCTGCAACTCCATTCACCACCGTCTCTTCCTTCTCTCCCTCCAACGCTCCCACTCCCAGATCTCGCCTTCTTCCTCTTCCATTCATCAACTTCCGCACTGCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCACATCATCGATTCCCGAACCAGATTCCATTCTCCCGATGCCGTCGAGCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCGGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCAACGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCGGTGCCCTAGGATTCTGTTCTCCGACGTCGAGTTATGTCTCCGGCCGACGCATAGATTCTTAAAGCAATTAGGGATAGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCACCTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTAAAGGAGATAGGATTCTCGCAGGAGGAGGCGGCAAAGGTTTGCGGGAGAATGCCGGCGATATTCGGGTACAGTGTGGAGGAGAATTTGTGGCCTAAATATGAGTATTTGGTGAAGGAAATGGAGAGGGATTTGGAGGAATTGAAAGGGTTTCCTCAGTATTTTGGGTTTAGCTTGGAAGGACGAATTATGCCTCGACATTTGCATTTGAAACGAAGGAATCTCCGAATTCCTCTTAATAGAATGCTGTTTTCAGCTCCGCCGTTGGTATCTCTACCGACTCAATTTGTTGAAACTATGGCGAGAAGTGAAATGCAGAACTAG

Coding sequence (CDS)

ATGGCGGTTGGAGCTGCAACTCCATTCACCACCGTCTCTTCCTTCTCTCCCTCCAACGCTCCCACTCCCAGATCTCGCCTTCTTCCTCTTCCATTCATCAACTTCCGCACTGCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCACATCATCGATTCCCGAACCAGATTCCATTCTCCCGATGCCGTCGAGCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCGGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCAACGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCGGTGCCCTAGGATTCTGTTCTCCGACGTCGAGTTATGTCTCCGGCCGACGCATAGATTCTTAAAGCAATTAGGGATAGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCACCTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTAAAGGAGATAGGATTCTCGCAGGAGGAGGCGGCAAAGGTTTGCGGGAGAATGCCGGCGATATTCGGGTACAGTGTGGAGGAGAATTTGTGGCCTAAATATGAGTATTTGGTGAAGGAAATGGAGAGGGATTTGGAGGAATTGAAAGGGTTTCCTCAGTATTTTGGGTTTAGCTTGGAAGGACGAATTATGCCTCGACATTTGCATTTGAAACGAAGGAATCTCCGAATTCCTCTTAATAGAATGCTGTTTTCAGCTCCGCCGTTGGTATCTCTACCGACTCAATTTGTTGAAACTATGGCGAGAAGTGAAATGCAGAACTAG

Protein sequence

MAVGAATPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKRRNLRIPLNRMLFSAPPLVSLPTQFVETMARSEMQN

Homology

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BLAST of ClCG02G005300 vs. NCBI nr
Match: XP_038887809.1 (transcription termination factor MTEF1, chloroplastic [Benincasa hispida])

HSP 1 Score: 477.6 bits (1228), Expect = 7.4e-131
Identity = 238/264 (90.15%), Postives = 249/264 (94.32%), Query Frame = 0


Query: 1   MAVGAATPFTTVSSFSPSNAPTPRSRL-LPLPFINFRTAHHQNLRYLKSLHIIDSRTRFH 60
           MAVGAA PFTTVSSFS    PT RSRL LP PFINFRT H QNLRYLKSLHIIDS+TRFH
Sbjct: 6   MAVGAAAPFTTVSSFSHFKTPTTRSRLHLPPPFINFRTPHQQNLRYLKSLHIIDSQTRFH 65

Query: 61  SPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASV 120
           SPDA++QILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAP+FHFL ADLSASV
Sbjct: 66  SPDAIDQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPVFHFLAADLSASV 125

Query: 121 QESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIR 180
           QESRGLILRCPRIL SDVELCL+PTH+FLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIR
Sbjct: 126 QESRGLILRCPRILLSDVELCLKPTHKFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIR 185

Query: 181 FLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFSL 240
           F++EIGFS EEAAK+CGRMPA+FGYSVEENL PKYEYLVKEMERDLEELKGFPQYFGFSL
Sbjct: 186 FMQEIGFSHEEAAKICGRMPAMFGYSVEENLKPKYEYLVKEMERDLEELKGFPQYFGFSL 245

Query: 241 EGRIMPRHLHLKRRNLRIPLNRML 264
           E RIMPRHLHLK+RNLRIPLNRML
Sbjct: 246 EARIMPRHLHLKQRNLRIPLNRML 269

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BLAST of ClCG02G005300 vs. NCBI nr
Match: XP_008454873.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] >KAA0031250.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK06701.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 5.1e-116
Identity = 220/270 (81.48%), Postives = 236/270 (87.41%), Query Frame = 0


Query: 1   MAVGA---ATPFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVGA   +  F  VSSFS    PTP +R     L  P INFRT+H QNLRYLKSL+IID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRF SPDAV+QILTTVHFLKSKGFSDSDFPRLAF CP LFT NFD TDIAP+FHFL A
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQ 240
           LR+KIRFL+EIGFS EEA+KVCGRMPAIFGYSV+ENL PKYEYLVK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
           YFGFSLEGRIMPRHLHLK+R L IPLN ML
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSML 270

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BLAST of ClCG02G005300 vs. NCBI nr
Match: XP_011658929.1 (transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN43986.1 hypothetical protein Csa_017691 [Cucumis sativus])

HSP 1 Score: 423.7 bits (1088), Expect = 1.3e-114
Identity = 215/270 (79.63%), Postives = 233/270 (86.30%), Query Frame = 0


Query: 1   MAVG---AATPFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVG    +  F  + SFS    PTP +R     L  P INFRT+HHQN+RYLKSL++ID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRFHSPDAV QILTTVHFLKSKGFSDSDFPRLAFLCP LFT NFD TDIAP+F FL  
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQ 240
           LRSKIRF +EIGFS EEA+KVCGRMPA+FGYSV+ENL PKYEY VKEMERDLEELKGFPQ
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
           YFGFSLEGRIMPRHLHLK+R L IPLN ML
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSML 270

[Close]

BLAST of ClCG02G005300 vs. NCBI nr
Match: KAG7022425.1 (Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 414.1 bits (1063), Expect = 1.0e-111
Identity = 210/265 (79.25%), Postives = 231/265 (87.17%), Query Frame = 0


Query: 1   MAVGA-ATPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSR-TRF 60
           MAVGA + PFTT+SS S SN PT R    P PF+NFRTAH+ NLRYLKSLH++DSR T+F
Sbjct: 1   MAVGALSRPFTTISSLSHSNTPTSRP---PPPFLNFRTAHYHNLRYLKSLHLLDSRSTKF 60

Query: 61  HSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSAS 120
            SPDAV  IL TVHFLKSKGFSDSDFP LAFLCPQLF+P+F+PTDIAP+F FL ADLSAS
Sbjct: 61  RSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSAS 120

Query: 121 VQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKI 180
           +QESRG+ILRCPR+LFSDVELCLRPT RFLKQ+GIENL +PSNL SHLLNTRVEKLR K 
Sbjct: 121 IQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKF 180

Query: 181 RFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFS 240
           RFL+E+GFS EEAAKVC RMPAIFGYSVEENL PKYEYLV EMERD+EELK FP YF FS
Sbjct: 181 RFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFS 240

Query: 241 LEGRIMPRHLHLKRRNLRIPLNRML 264
           LE RI PRHLHLK+RNLRIPL+RML
Sbjct: 241 LERRIAPRHLHLKQRNLRIPLHRML 262

[Close]

BLAST of ClCG02G005300 vs. NCBI nr
Match: XP_022931610.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 413.3 bits (1061), Expect = 1.7e-111
Identity = 210/265 (79.25%), Postives = 230/265 (86.79%), Query Frame = 0


Query: 1   MAVGA-ATPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSR-TRF 60
           MAVGA + PFTT+SS S SN PT R    P PF+NFRTAH+ NLRYLKSLH++DSR T+F
Sbjct: 1   MAVGALSRPFTTISSLSHSNTPTSRP---PPPFLNFRTAHYHNLRYLKSLHLLDSRSTKF 60

Query: 61  HSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSAS 120
            SPDAV  IL TVHFLKSKGFSDSDFP LA LCPQLF+P+FDPTDIAP+F FL ADLSAS
Sbjct: 61  RSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSAS 120

Query: 121 VQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKI 180
           +QESRG+ILRCPR+LFSDVELCLRPT RFLKQ+GIENL +PSNL SHLLNTRVEKLR K 
Sbjct: 121 IQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKF 180

Query: 181 RFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFS 240
           RFL+E+GFS EEAAKVC RMPAIFGYSVEENL PKYEYLV EMERD+EELK FP YF FS
Sbjct: 181 RFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFS 240

Query: 241 LEGRIMPRHLHLKRRNLRIPLNRML 264
           LE RI PRHLHLK+RNLRIPL+RML
Sbjct: 241 LERRIAPRHLHLKQRNLRIPLHRML 262

[Close]

BLAST of ClCG02G005300 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-34
Identity = 90/230 (39.13%), Postives = 134/230 (58.26%), Query Frame = 0


Query: 41  QNLRYLKSLHIIDSRTRFHSPD----AVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFT 100
           + L YL+ L++   +    +P      +  +++    L S G S     R+  + P L T
Sbjct: 35  EKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLT 94

Query: 101 PNFDP-TDIAPIFHFLNADLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIEN 160
              DP ++I P+  FL+ ++S S Q+    I RCPR+L S V+  LRP   FLK LG   
Sbjct: 95  S--DPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 154

Query: 161 LKSPSNLNSHLLNTRVEK-LRSKIRFLKE-IGFSQEEAAKVCGRMPAIFGYSVEENLWPK 220
             + ++ N+ LL + VE+ L  KI +L+E +GF++EE AK+  R PA+  YSV+ NL PK
Sbjct: 155 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 214

Query: 221 YEYLVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
            E+ ++EM  D++ELK FPQYF FSLE +I PRH  LK   + +PL+ ML
Sbjct: 215 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEML 262

[Close]

BLAST of ClCG02G005300 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.1e-15
Identity = 58/214 (27.10%), Postives = 104/214 (48.60%), Query Frame = 0


Query: 51  IIDSRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHF 110
           I+  R +       + +  T+ FL++ G   + + ++    P + T  +    +     F
Sbjct: 252 ILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILT--YSRQKLTSTVEF 311

Query: 111 LNADLSASVQESRGLIL-RCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNT 170
           L+   +   +E  G IL RCP I+   VE  LRPT  + + L ++              +
Sbjct: 312 LSQ--TGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLS 371

Query: 171 RVEKLRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELK 230
               L+    F  E GF  +E   +  R  A++ +S++EN+ PK++Y  + M+    EL 
Sbjct: 372 IESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELV 431

Query: 231 GFPQYFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
            FPQ+FG+SL+ RI PR+  ++R  +R+ LN++L
Sbjct: 432 KFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVL 460

[Close]

BLAST of ClCG02G005300 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-12
Identity = 49/184 (26.63%), Postives = 85/184 (46.20%), Query Frame = 0


Query: 71  VHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLILRCP 130
           + FL   G  +S   ++    P LF+ + +   + P   +L  ++     +   ++   P
Sbjct: 259 ISFLMGLGIPNSKIGQIVAATPSLFSYSVE-NSLRPTIRYLIEEVGIKETDVGKVVQLSP 318

Query: 131 RILFSDVELCLRPTHRFL-KQLGIENLKSPSNLNSH--LLNTRVEK-LRSKIRFLKEIGF 190
           +IL   +++     + FL K+LG         +  H  LL+  ++     +I FL+ IG 
Sbjct: 319 QILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGM 378

Query: 191 SQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFSLEGRIMPR 250
              +  KV   +  +   S+E+NL PKY YLV E+  ++  L  +P Y   SL+ RI PR
Sbjct: 379 CNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPR 438

[Close]

BLAST of ClCG02G005300 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-11
Identity = 65/235 (27.66%), Postives = 101/235 (42.98%), Query Frame = 0


Query: 71  VHFLKSKGFSDSDFPRLAFLCPQLFTPNFDP--TDIAPIFHFLNADLSASVQESRGLILR 130
           +++LK  G S  +  RL    P L   + +     +   F++L        +E    IL 
Sbjct: 356 INYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIP-----KEGMKRILV 415

Query: 131 CPRILFS-DVELCLRPTHRFLKQLGIENLKSPSNL---NSHLLNTRVEKLRSKIRF-LKE 190
              IL+  D+E  + P  RFL+++GI N    + L    S L N+  +K+R  + F L  
Sbjct: 416 VKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 475

Query: 191 IGFSQEEAAKVCGRMPAIFGYSV-----------------------------------EE 250
            G +Q++  KV    PA+ G S+                                    +
Sbjct: 476 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVD 535

Query: 251 NLWPKYEYLVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
           NL PKY YL + M R L++L  FP++F +SLE RI+PRH  +    +   L  ML
Sbjct: 536 NLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYML 585

[Close]

BLAST of ClCG02G005300 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-11
Identity = 57/204 (27.94%), Postives = 98/204 (48.04%), Query Frame = 0


Query: 65  EQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRG 124
           E++   + F ++ G  ++   ++    P+L + + D T +  I  FL A L        G
Sbjct: 112 EKLCPLLAFFQALGVPETQLGKMILFNPRLISYSID-TKLTVIVSFL-ASLGLDQDGMIG 171

Query: 125 LIL-RCPRILFSDVELCLRPTHRFLKQ---LGIENLKSPSNLNSHLLNTRVEK-LRSKIR 184
            +L + P ++   V+  LRPT  FLK    L  + +KS       LL   V K L+    
Sbjct: 172 KVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYD 231

Query: 185 FLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFSL 244
           +LKE GF   + A +    P I   SV+ +L P+  +LV+ M R ++E+  +P++F   L
Sbjct: 232 YLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGL 291

Query: 245 EGRIMPRHLHLKRRNLRIPLNRML 264
           + ++  R   +K+ N+   L  ML
Sbjct: 292 KKKVESRFKLVKKNNIDCSLREML 313

[Close]

BLAST of ClCG02G005300 vs. ExPASy TrEMBL
Match: A0A5D3C479 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00020 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.5e-116
Identity = 220/270 (81.48%), Postives = 236/270 (87.41%), Query Frame = 0


Query: 1   MAVGA---ATPFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVGA   +  F  VSSFS    PTP +R     L  P INFRT+H QNLRYLKSL+IID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRF SPDAV+QILTTVHFLKSKGFSDSDFPRLAF CP LFT NFD TDIAP+FHFL A
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQ 240
           LR+KIRFL+EIGFS EEA+KVCGRMPAIFGYSV+ENL PKYEYLVK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
           YFGFSLEGRIMPRHLHLK+R L IPLN ML
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSML 270

[Close]

BLAST of ClCG02G005300 vs. ExPASy TrEMBL
Match: A0A1S3BZK0 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495186 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.5e-116
Identity = 220/270 (81.48%), Postives = 236/270 (87.41%), Query Frame = 0


Query: 1   MAVGA---ATPFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVGA   +  F  VSSFS    PTP +R     L  P INFRT+H QNLRYLKSL+IID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRF SPDAV+QILTTVHFLKSKGFSDSDFPRLAF CP LFT NFD TDIAP+FHFL A
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQ 240
           LR+KIRFL+EIGFS EEA+KVCGRMPAIFGYSV+ENL PKYEYLVK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
           YFGFSLEGRIMPRHLHLK+R L IPLN ML
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSML 270

[Close]

BLAST of ClCG02G005300 vs. ExPASy TrEMBL
Match: A0A0A0K870 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 6.1e-115
Identity = 215/270 (79.63%), Postives = 233/270 (86.30%), Query Frame = 0


Query: 1   MAVG---AATPFTTVSSFSPSNAPTPRSRL----LPLPFINFRTAHHQNLRYLKSLHIID 60
           MAVG    +  F  + SFS    PTP +R     L  P INFRT+HHQN+RYLKSL++ID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRTRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNA 120
            +TRFHSPDAV QILTTVHFLKSKGFSDSDFPRLAFLCP LFT NFD TDIAP+F FL  
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLILRCP+ILFSDVELCL+PTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQ 240
           LRSKIRF +EIGFS EEA+KVCGRMPA+FGYSV+ENL PKYEY VKEMERDLEELKGFPQ
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
           YFGFSLEGRIMPRHLHLK+R L IPLN ML
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSML 270

[Close]

BLAST of ClCG02G005300 vs. ExPASy TrEMBL
Match: A0A6J1EZY9 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437777 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 8.3e-112
Identity = 210/265 (79.25%), Postives = 230/265 (86.79%), Query Frame = 0


Query: 1   MAVGA-ATPFTTVSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSR-TRF 60
           MAVGA + PFTT+SS S SN PT R    P PF+NFRTAH+ NLRYLKSLH++DSR T+F
Sbjct: 1   MAVGALSRPFTTISSLSHSNTPTSRP---PPPFLNFRTAHYHNLRYLKSLHLLDSRSTKF 60

Query: 61  HSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSAS 120
            SPDAV  IL TVHFLKSKGFSDSDFP LA LCPQLF+P+FDPTDIAP+F FL ADLSAS
Sbjct: 61  RSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSAS 120

Query: 121 VQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKI 180
           +QESRG+ILRCPR+LFSDVELCLRPT RFLKQ+GIENL +PSNL SHLLNTRVEKLR K 
Sbjct: 121 IQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGKF 180

Query: 181 RFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFS 240
           RFL+E+GFS EEAAKVC RMPAIFGYSVEENL PKYEYLV EMERD+EELK FP YF FS
Sbjct: 181 RFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFPHYFAFS 240

Query: 241 LEGRIMPRHLHLKRRNLRIPLNRML 264
           LE RI PRHLHLK+RNLRIPL+RML
Sbjct: 241 LERRIAPRHLHLKQRNLRIPLHRML 262

[Close]

BLAST of ClCG02G005300 vs. ExPASy TrEMBL
Match: A0A6J1JEA2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486102 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 9.1e-111
Identity = 209/269 (77.70%), Postives = 230/269 (85.50%), Query Frame = 0


Query: 1   MAVGAAT-PFTTVSSFSPSNAPT----PRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSR 60
           MAVGA + PFTT+SS S SN+PT    P     P PF+NFRTAH  NLRYLKSL ++DS 
Sbjct: 1   MAVGALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLDSH 60

Query: 61  -TRFHSPDAVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNAD 120
            T+F SPDAV  IL TVHFLKSKGFSDSDFP LAFLCPQLF+P+FDPTDIAP+F FL AD
Sbjct: 61  STKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAAD 120

Query: 121 LSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKL 180
           LSAS+QESRG+ILRCP++LFSDVELCLRPT RFLKQ+G+ENL +PSNL SHLLNTRVEKL
Sbjct: 121 LSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKL 180

Query: 181 RSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQY 240
           R K RFL+E+GFS EEAAKVC RMPA+FGYSVEENL PKYEYLV EMERDLEELK FPQY
Sbjct: 181 RGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFPQY 240

Query: 241 FGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
           F FSLE RI PRHLHLK+RNLRIPLNRML
Sbjct: 241 FAFSLERRIAPRHLHLKQRNLRIPLNRML 269

[Close]

BLAST of ClCG02G005300 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 300.4 bits (768), Expect = 1.5e-81
Identity = 150/253 (59.29%), Postives = 190/253 (75.10%), Query Frame = 0


Query: 12  VSSFSPSNAPTPRSRLLPLPFINFRTAHHQNLRYLKSLHIIDSRTRFHSP-DAVEQILTT 71
           +SSFS   +P+    L    ++ F+T+H +NLR+L SL I+    R   P + +  IL+ 
Sbjct: 13  LSSFSSPPSPSSSKPL----YLKFQTSHRENLRHLSSLGIVPQNPRLAPPANDLSVILSA 72

Query: 72  VHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESRGLILRCP 131
           V+ LKSKG SD DFPRL FLCPQLF+P FD + + P+F FL  +L AS +ESRGLI+ CP
Sbjct: 73  VNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNCP 132

Query: 132 RILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFLKEIGFSQEE 191
            ILFSDVE CLRPT  +LK+LG+ NL   S  N+H+LNTRVEKLR+K+RFLK IGF  EE
Sbjct: 133 NILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHEE 192

Query: 192 AAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHL 251
           AA+VCGR+PAIFGYSVE+NL PK+E+LV +MER+LEELK FPQYF FSL  RI PRH HL
Sbjct: 193 AARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHL 252

Query: 252 KRRNLRIPLNRML 264
           K++N+R+ L+RML
Sbjct: 253 KKKNVRVSLSRML 261

[Close]

BLAST of ClCG02G005300 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 159.5 bits (402), Expect = 4.1e-39
Identity = 87/203 (42.86%), Postives = 130/203 (64.04%), Query Frame = 0


Query: 64  VEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLNADLSASVQESR 123
           ++ I + +HFL+SKG   +D PR+  +CP++ T +   T++ P+F FL+ DL       R
Sbjct: 84  LDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDV-RTELYPVFMFLSNDLHVPENAFR 143

Query: 124 GLILRCPRILFSDVELCLRPTHRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKIRFLK 183
            +I +CPR+L S VE  L+P   +L++LG+++L++ +  +  LL + VE  L  K+RFL+
Sbjct: 144 RVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLE 203

Query: 184 EIGFSQEEAAKVCGRMPAIFGYSVEENLWPKYEYLVKEMERDLEELKGFPQYFGFSLEGR 243
            IGFS+ EA  +  R PA+F +S+E N  PK +Y + E++  LE LK FPQYF FSLE R
Sbjct: 204 SIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKR 263

Query: 244 IMPRHLHLKRRNLRIPLNRMLFS 266
           I PRHL    R L +PL+ ML S
Sbjct: 264 IKPRHLESMERGLELPLSLMLKS 285

[Close]

BLAST of ClCG02G005300 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 145.6 bits (366), Expect = 6.2e-35
Identity = 90/230 (39.13%), Postives = 134/230 (58.26%), Query Frame = 0


Query: 41  QNLRYLKSLHIIDSRTRFHSPD----AVEQILTTVHFLKSKGFSDSDFPRLAFLCPQLFT 100
           + L YL+ L++   +    +P      +  +++    L S G S     R+  + P L T
Sbjct: 34  EKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLT 93

Query: 101 PNFDP-TDIAPIFHFLNADLSASVQESRGLILRCPRILFSDVELCLRPTHRFLKQLGIEN 160
              DP ++I P+  FL+ ++S S Q+    I RCPR+L S V+  LRP   FLK LG   
Sbjct: 94  S--DPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 153

Query: 161 LKSPSNLNSHLLNTRVEK-LRSKIRFLKE-IGFSQEEAAKVCGRMPAIFGYSVEENLWPK 220
             + ++ N+ LL + VE+ L  KI +L+E +GF++EE AK+  R PA+  YSV+ NL PK
Sbjct: 154 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 213

Query: 221 YEYLVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
            E+ ++EM  D++ELK FPQYF FSLE +I PRH  LK   + +PL+ ML
Sbjct: 214 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEML 261

[Close]

BLAST of ClCG02G005300 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-28
Identity = 86/233 (36.91%), Postives = 129/233 (55.36%), Query Frame = 0


Query: 40  HQNLRYLKSLHIIDSRTRF--HSP---DAVEQILTTVHFLKSK--GFSDSDFPRLAFLCP 99
           H+ L YL SL  ID  T    H P    A+  + + V ++ +    F+  DF RL  +CP
Sbjct: 74  HEKLIYLDSLG-IDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCP 133

Query: 100 QLFTPNFDPTDIAPIFHFLNADLSA-SVQESRGLILRCPRILFSDVELCLRPTHRFLKQL 159
           +L T       I P+  FL  ++   S+ + R  + R PR+L   V+  LRPT  FL+++
Sbjct: 134 ELLTSPLTSHTI-PVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRI 193

Query: 160 GIENLKSPSNLNSHLLNTRVE-KLRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENL 219
           GI +     + +++LL+  V+ KL  +I + +++GFS+  A  +  R P +F YS+ EN 
Sbjct: 194 GILD----PHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENY 253

Query: 220 WPKYEYLVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
            PK +YL+ EM RD+ E+  FPQYF FSLE RI PRH     + +R PL  ML
Sbjct: 254 EPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVML 300

[Close]

BLAST of ClCG02G005300 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-28
Identity = 86/233 (36.91%), Postives = 129/233 (55.36%), Query Frame = 0


Query: 40  HQNLRYLKSLHIIDSRTRF--HSP---DAVEQILTTVHFLKSK--GFSDSDFPRLAFLCP 99
           H+ L YL SL  ID  T    H P    A+  + + V ++ +    F+  DF RL  +CP
Sbjct: 74  HEKLIYLDSLG-IDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRRLVSMCP 133

Query: 100 QLFTPNFDPTDIAPIFHFLNADLSA-SVQESRGLILRCPRILFSDVELCLRPTHRFLKQL 159
           +L T       I P+  FL  ++   S+ + R  + R PR+L   V+  LRPT  FL+++
Sbjct: 134 ELLTSPLTSHTI-PVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYFLQRI 193

Query: 160 GIENLKSPSNLNSHLLNTRVE-KLRSKIRFLKEIGFSQEEAAKVCGRMPAIFGYSVEENL 219
           GI +     + +++LL+  V+ KL  +I + +++GFS+  A  +  R P +F YS+ EN 
Sbjct: 194 GILD----PHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYSIAENY 253

Query: 220 WPKYEYLVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKRRNLRIPLNRML 264
            PK +YL+ EM RD+ E+  FPQYF FSLE RI PRH     + +R PL  ML
Sbjct: 254 EPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVML 300

The following BLAST results are available for this feature:

BLAST of ClCG02G005300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887809.1	7.4e-131	90.15	transcription termination factor MTEF1, chloroplastic [Benincasa hispida]	[more]
XP_008454873.1	5.1e-116	81.48	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] ...	[more]
XP_011658929.1	1.3e-114	79.63	transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN4398...	[more]
KAG7022425.1	1.0e-111	79.25	Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyro...	[more]
XP_022931610.1	1.7e-111	79.25	transcription termination factor MTEF1, chloroplastic [Cucurbita moschata]	[more]

BLAST of ClCG02G005300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	8.7e-34	39.13	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
F4JVI3	9.1e-15	27.10	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	2.5e-12	26.63	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	3.6e-11	27.66	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9SZL6	3.6e-11	27.94	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]

BLAST of ClCG02G005300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C479	2.5e-116	81.48	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BZK0	2.5e-116	81.48	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0K870	6.1e-115	79.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1	[more]
A0A6J1EZY9	8.3e-112	79.25	transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3...	[more]
A0A6J1JEA2	9.1e-111	77.70	transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366...	[more]

BLAST of ClCG02G005300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18870.1	1.5e-81	59.29	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	4.1e-39	42.86	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	6.2e-35	39.13	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	7.3e-28	36.91	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	7.3e-28	36.91	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 159..187 e-value: 78.0 score: 12.1 coord: 49..80 e-value: 13.0 score: 14.7 coord: 192..224 e-value: 0.0014 score: 27.9 coord: 225..256 e-value: 0.074 score: 22.2 coord: 123..154 e-value: 5.8E-4 score: 29.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 116..263 e-value: 4.1E-28 score: 98.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 24..264
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 38..285 e-value: 2.7E-41 score: 143.5
None	No IPR available	PANTHER	PTHR13068:SF139	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	coord: 24..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G005300.2	ClCG02G005300.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003690	double-stranded DNA binding