ClCG02G004920 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G004920
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein RADIALIS-like 1
Location	CG_Chr02: 5202369 .. 5204201 (-)
RNA-Seq Expression	ClCG02G004920
Synteny	ClCG02G004920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCTTCTCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAATGTTGCAAAAGCTGTTGGGGGAAAAACTGCTGAGGAAGTCAAAAGGCATTATGCCCTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCCTATCGAACCTCCGGAGGCGGTAGCCAAGGTAATGTAATCTTTTGAATTGATGGGTAATTTAACATATGGTATTAAAGTTTGAGGGGTTTCGTGTGTTTGAGTTTCTCTCTACTTGTTAGATCTTCTACTAAATTTTGAAGTATACAAATGAAGCGGGAGTGTTAAAATACTGATATTATAACTAATTTACTGTAACTTGTAAACGTAAGATTTTAAGGTTAGTTAGTGGTTTATCAAACGAGATATGATCATCTATGTCAAAAGGTGCATACAAGAAAGAAATGGTGGAAATATATGGATGAACATAGTGTTCCATATCAAAACCAATTGGCAATTAAAGGAGTAGCTCATATATCTAGTTAAAATGGTGAGATCTCCCTATATTTCTAATTATTGTGGGAATCTTGATCAACATGTCTCTCAAAATGGTGCCTTTTTTAATTCATCATTCTTGGGTCGAATCGCAATTTTTTTTAACCGAATACTCATGAGTTTTAGGTTCCGAAATACTATACATGTAGATAAACATGCATTTCCTCTCAAAATCAATTGACTATGAGAAAGATAACTCATATATCTTATATTAAAAAAAATAATAGTAGAGCACCCATATGTAAACAAGTATTATTTTGTAGAATAATGCGTTTGTCTACTCACTCTACTTCATGCACCTAAGTTTTATCTATGAAAAACAAGTCTTAATATACTTATATTTTTATGGGTGCGATTATATTAGCAATAATACAATTGATCCCCTCATAACTCCACCAATTAAGAATGTTTGGATGAGAGCGTAGTACTAAGTTGGGTGACAACTTGGGAAGTCCTCGTGTTGCACCCCTTATATATATAATATAGTAGAAGTTTCTATAACACATCCTCATGTAATCACTGATAGTCCCAATCTATCTCTTGTTAAATTACTTTTATTTTGACCAGAGAAGTCACATGTATGGTTAAAAATATGCTGGATTAAATTATTATACTTACAATAATACAACGTAGTATCATAGTAGAAGGTCATCTTAGAAACCTATATTTTTGTCTCTAGTTAGTCATGTTTACTGATCTAGTTGAGTTCAAATGGGGTATCATAATTATTTTCCAAGGAGGAAGAAAAAGCCCTAGCCCAACCCATTGGATTTTGAATGATCTCTAGCTAGCATGCAAAAGATTTTATGTCTTTATACAATTTGTATGTATATGAACAGAGGAATGTCAATATCAATGAATAGTAGCCCCCCCATTTGGGATGCATTCTTCTATGAATTAATGGGCTACATGTTTGAATAAAAAAACAATATAACTCTTGATATTGTAAGCTTTTTTGAAAGGCCCCCTTTTCTTCTTGTTCTTTGAAACTAAAGCTGCACCAATCCCTCAGCATTGGCTCTTCAGACTCCAACAAAAACAGCATTTATATATATTAGGAATAATAATAATATATATCATTTATATATTAACATCTTATTATCATTTTTTATGTTGGATTATTATTATTATTATTATTATTATTATTATTATTGTTTGTTTGTTTGTTTATTTATTTATTTATTTATTTTTGGTTCGTAGGATGAGGAACATGAAGATCCAGCATTGAGATTGATGGTGAAGTAA

mRNA sequence

ATGGCTTCAATGTCTTCTCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAATGTTGCAAAAGCTGTTGGGGGAAAAACTGCTGAGGAAGTCAAAAGGCATTATGCCCTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCCTATCGAACCTCCGGAGGCGGTAGCCAAGGTAATGATGAGGAACATGAAGATCCAGCATTGAGATTGATGGTGAAGTAA

Coding sequence (CDS)

ATGGCTTCAATGTCTTCTCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAATGTTGCAAAAGCTGTTGGGGGAAAAACTGCTGAGGAAGTCAAAAGGCATTATGCCCTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCCTATCGAACCTCCGGAGGCGGTAGCCAAGGTAATGATGAGGAACATGAAGATCCAGCATTGAGATTGATGGTGAAGTAA

Protein sequence

MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLMVK

Homology

[Close]

BLAST of ClCG02G004920 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 7.2e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQGN 84
          VKFIESGQVPFPYRTSG G+QGN
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQGN 83

[Close]

BLAST of ClCG02G004920 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQG 83
          VKFIESGQVPFPYRTSGGG+QG
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQG 82

[Close]

BLAST of ClCG02G004920 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 3.6e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQG 83
          VKFIESGQVPFPYRTSG G+QG
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQG 82

[Close]

BLAST of ClCG02G004920 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQ 82
          VKFIESGQVPFPYRTSGGG+Q
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of ClCG02G004920 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WTAKQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLM 96
          VKFIESGQV FPYRTSGGGS GN    ++  +R M
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHGNMTTDDEKRMRNM 95

[Close]

BLAST of ClCG02G004920 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-29
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGSQGNDEEHE 89
            IE+G VPFP YRTSGG + G   + E
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLSQEE 91

[Close]

BLAST of ClCG02G004920 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-27
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 3  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM 96
           IE+G VPFP Y+T+ G S       E+  +R M
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSM 98

[Close]

BLAST of ClCG02G004920 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.9e-26
Identity = 56/91 (61.54%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 5  SSHGSG-TWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+AK+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSGGGSQGNDEEHEDPALR 94
          IESG+VPFP YRT+GG  + +++   +  +R
Sbjct: 63 IESGKVPFPNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of ClCG02G004920 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM 96
          +  IE   VP P Y+T   GS+    +  D  LRLM
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRGIDDFD--LRLM 94

[Close]

BLAST of ClCG02G004920 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-23
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFP-YRTSG 78
          V  IESG+ P P YR++G
Sbjct: 61 VNDIESGRYPHPNYRSNG 78

[Close]

BLAST of ClCG02G004920 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQGN 84
          VKFIESGQVPFPYRTSG G+QGN
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQGN 83

[Close]

BLAST of ClCG02G004920 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQG 83
          VKFIESGQVPFPYRTSGGG+QG
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQG 82

[Close]

BLAST of ClCG02G004920 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQG 83
          VKFIESGQVPFPYRTSG G+QG
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQG 82

[Close]

BLAST of ClCG02G004920 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WTAKQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSGGGSQGNDEEHEDPALRLM 96
          VKFIESGQV FPYRTSGGGS GN    ++  +R M
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHGNMTTDDEKRMRNM 95

[Close]

BLAST of ClCG02G004920 vs. ExPASy TrEMBL
Match: A0A6J1GJE9 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWT KQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYRTSGGGSQG 83
          DVKFIESGQVPFPYRTSGGG+QG
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQG 83

[Close]

BLAST of ClCG02G004920 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-30
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 2  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGGGSQGNDEEHE 89
            IE+G VPFP YRTSGG + G   + E
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLSQEE 91

[Close]

BLAST of ClCG02G004920 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 123.6 bits (309), Expect = 8.5e-29
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 3  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM 96
           IE+G VPFP Y+T+ G S       E+  +R M
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSM 98

[Close]

BLAST of ClCG02G004920 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-24
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGSQGNDEEHEDPALRLM 96
          +  IE   VP P Y+T   GS+    +  D  LRLM
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRGIDDFD--LRLM 94

[Close]

BLAST of ClCG02G004920 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 104.4 bits (259), Expect = 5.3e-23
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGSQ 82
          +  IE+G+VP P Y+T    S+
Sbjct: 61 LINIETGRVPLPNYKTFESNSR 82

[Close]

BLAST of ClCG02G004920 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 104.4 bits (259), Expect = 5.3e-23
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGGGSQ 82
          +  IE+G+VP P Y+T    S+
Sbjct: 61 LINIETGRVPLPNYKTFESNSR 82

The following BLAST results are available for this feature:

BLAST of ClCG02G004920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036150.1	7.2e-38	96.39	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_004151125.2	2.7e-37	96.34	protein RADIALIS-like 1 [Cucumis sativus]	[more]
XP_008447024.1	3.6e-37	96.34	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
KAE8645641.1	1.4e-36	96.30	hypothetical protein Csa_020418 [Cucumis sativus]	[more]
XP_022136064.1	3.0e-36	83.16	protein RADIALIS-like 1 [Momordica charantia]	[more]

BLAST of ClCG02G004920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	8.3e-29	70.45	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.2e-27	64.89	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	3.9e-26	61.54	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q8GW75	3.1e-23	61.46	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q6NNN0	5.2e-23	66.67	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]

BLAST of ClCG02G004920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYK4	3.5e-38	96.39	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K348	1.3e-37	96.34	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A1S3BFW6	1.7e-37	96.34	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A6J1C385	1.5e-36	83.16	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A6J1GJE9	1.4e-34	91.57	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1	[more]

BLAST of ClCG02G004920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	5.9e-30	70.45	RAD-like 1	[more]
AT2G21650.1	8.5e-29	64.89	Homeodomain-like superfamily protein	[more]
AT1G19510.1	2.2e-24	61.46	RAD-like 5	[more]
AT1G75250.1	5.3e-23	64.63	RAD-like 6	[more]
AT1G75250.2	5.3e-23	64.63	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 3.1E-7 score: 40.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.10953
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..54 e-value: 4.35079E-7 score: 41.0218
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 2.3E-23 score: 83.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..97
None	No IPR available	PANTHER	PTHR43952:SF73	PROTEIN RADIALIS-LIKE 1	coord: 1..79
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..79
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 9.502541
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G004920.1	ClCG02G004920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity