ClCG02G003900 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G003900
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr02: 3983017 .. 3983394 (+)
RNA-Seq Expression	ClCG02G003900
Synteny	ClCG02G003900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGACGGAAAGCAGACTGTGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGATGCCGGAAAAATGCCAAACCCAATAGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTTTGTTTCTCAGAGCGAAGAAAACGGCGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCCCAAGTTCTCGAAGCCATGGGCAGCGACGGCGGCCGCGGCGAAGGAGCTGCTCCGGCGTCTGTCTCCGTCGAACAGCGGTTGGCTCTTATGAGGCGGAAGCAACTTCTCCGTGCGAAATTAGCGGCCGCCACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAGATCGATTCATTCTGA

mRNA sequence

ATGGTCGACGGAAAGCAGACTGTGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGATGCCGGAAAAATGCCAAACCCAATAGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTTTGTTTCTCAGAGCGAAGAAAACGGCGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCCCAAGTTCTCGAAGCCATGGGCAGCGACGGCGGCCGCGGCGAAGGAGCTGCTCCGGCGTCTGTCTCCGTCGAACAGCGGTTGGCTCTTATGAGGCGGAAGCAACTTCTCCGTGCGAAATTAGCGGCCGCCACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAGATCGATTCATTCTGA

Coding sequence (CDS)

ATGGTCGACGGAAAGCAGACTGTGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGATGCCGGAAAAATGCCAAACCCAATAGTCTATTGGAAGCCATTGCCAAAGCAAGCAGAGAAGGAACTGGTTTTGTTTCTCAGAGCGAAGAAAACGGCGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCCCAAGTTCTCGAAGCCATGGGCAGCGACGGCGGCCGCGGCGAAGGAGCTGCTCCGGCGTCTGTCTCCGTCGAACAGCGGTTGGCTCTTATGAGGCGGAAGCAACTTCTCCGTGCGAAATTAGCGGCCGCCACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAGATCGATTCATTCTGA

Protein sequence

MVDGKQTVSPNGAFRRLFRARCRKNAKPNSLLEAIAKASREGTGFVSQSEENGVVRIKMVVKKTDLAQVLEAMGSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAAATWSPALQSIPEIDSF

Homology

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BLAST of ClCG02G003900 vs. NCBI nr
Match: KAA0025124.1 (hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK19366.1 hypothetical protein E5676_scaffold3037G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 1   MVDGKQTVSPNGAFRRLFRARCRKNAKPNSLLEAIAKASREGTGFVSQSEENGVVRIKMV 60
           M++GKQ VSPNG FRRLFRARCRK+AK N LLEAIAKASREGTGFVS SEENGVVRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAM---GSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAAATWSPALQ 120
           VKKTDLAQVLEAM   G DGG G G A ASVS+EQRLA++RRKQLLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIP-EIDSF 126
           SIP EIDSF
Sbjct: 121 SIPEEIDSF 129

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BLAST of ClCG02G003900 vs. NCBI nr
Match: XP_023511743.1 (uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 108/126 (85.71%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MVDGKQTVSPNGAFRRLFRARCRKNAKPNSLLEAIAKASREGTGFVSQSEENGVVRIKMV 60
           M+DGKQT SPNGAFRRLFRAR RKNAK ++LLEAIAK SREGTGFVSQ+EE+GVVRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMGSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAAATWSPALQSIP 120
           VKKTDLAQVLEAM   GG G G APASVSVEQRLA+MRRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLAQVLEAMAGGGG-GGGVAPASVSVEQRLAIMRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 -EIDSF 126
            EIDSF
Sbjct: 121 EEIDSF 125

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BLAST of ClCG02G003900 vs. NCBI nr
Match: KAG6572129.1 (hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MVDGKQTVSPNGAFRRLFRARCRKNAKPNSLLEAIAKASREGTGFVSQSEENGVVRIKMV 60
           M+DGKQT SPNGAFRRLFRAR RKNAK ++LLEAIAK SREGTGFVSQ+EE+GVVRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMGSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAAATWSPALQSIP 120
           VKKTDLAQVLEA+   GG G G APASVSVE RLA+MRRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLAQVLEALAGGGG-GGGVAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EID 124
           EI+
Sbjct: 121 EIE 122

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BLAST of ClCG02G003900 vs. NCBI nr
Match: KGN43274.1 (hypothetical protein Csa_020212 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 101/126 (80.16%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MVDGKQTVSPNGAFRRLFRARCRKNAKPNSLLEAIAKASREGTGFVSQSEENGVVRIKMV 60
           M++GKQ  SPNG FRRLFRARCRK+AK N LLEAIAKASREG GFVS SEENGVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMGSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAAATWSPALQSIP 120
           VKKTDL QVLEAMG   G G   APASVS+E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 -EIDSF 126
            EIDSF
Sbjct: 121 EEIDSF 126

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BLAST of ClCG02G003900 vs. NCBI nr
Match: CAB4290916.1 (unnamed protein product [Prunus armeniaca] >CAB4321236.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 15  RRLFR-ARCRKNAK-----PNSLLEAIAKAS---REGTGFVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N K      N+L+EAIAK +   +EGT  +S Q++E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLEAMGSDGGRGEGAA--PASVSVEQRLALMRRKQLLRAKLAA-----ATWSPALQ 122
           DL QVLE M   G   + +A  P+S+ VEQRL+L+R+K LLRA LAA      +W PALQ
Sbjct: 66  DLKQVLELMNGGGINNQASAVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQGSWCPALQ 125

[Close]

BLAST of ClCG02G003900 vs. ExPASy TrEMBL
Match: A0A5A7SHL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00200 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.3e-48
Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 1   MVDGKQTVSPNGAFRRLFRARCRKNAKPNSLLEAIAKASREGTGFVSQSEENGVVRIKMV 60
           M++GKQ VSPNG FRRLFRARCRK+AK N LLEAIAKASREGTGFVS SEENGVVRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAM---GSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAAATWSPALQ 120
           VKKTDLAQVLEAM   G DGG G G A ASVS+EQRLA++RRKQLLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIP-EIDSF 126
           SIP EIDSF
Sbjct: 121 SIPEEIDSF 129

[Close]

BLAST of ClCG02G003900 vs. ExPASy TrEMBL
Match: A0A0A0K2L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 101/126 (80.16%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MVDGKQTVSPNGAFRRLFRARCRKNAKPNSLLEAIAKASREGTGFVSQSEENGVVRIKMV 60
           M++GKQ  SPNG FRRLFRARCRK+AK N LLEAIAKASREG GFVS SEENGVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEAMGSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAAATWSPALQSIP 120
           VKKTDL QVLEAMG   G G   APASVS+E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 -EIDSF 126
            EIDSF
Sbjct: 121 EEIDSF 126

[Close]

BLAST of ClCG02G003900 vs. ExPASy TrEMBL
Match: A0A6J5VPM4 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51099 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 15  RRLFR-ARCRKNAK-----PNSLLEAIAKAS---REGTGFVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N K      N+L+EAIAK +   +EGT  +S Q++E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLEAMGSDGGRGEGAA--PASVSVEQRLALMRRKQLLRAKLAA-----ATWSPALQ 122
           DL QVLE M   G   + +A  P+S+ VEQRL+L+R+K LLRA LAA      +W PALQ
Sbjct: 66  DLKQVLELMNGGGINNQASAVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQGSWCPALQ 125

[Close]

BLAST of ClCG02G003900 vs. ExPASy TrEMBL
Match: A0A314YA00 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10648 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.7e-14
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 0


Query: 15  RRLFR-ARCRKNAK-----PNSLLEAIAKAS---REGTGFVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N K      N+L+EAIAK +   +EGT  +S Q++E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQTQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLEAM-GSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAA-----ATWSPALQS 122
           DL QVLE M G    +     P+S+ VEQRL+L+R+K LLRA LAA     ++W PALQS
Sbjct: 66  DLKQVLELMNGGINSQASVVRPSSLCVEQRLSLLRKKHLLRASLAAKHSRQSSWRPALQS 125

[Close]

BLAST of ClCG02G003900 vs. ExPASy TrEMBL
Match: A0A314Z8S5 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_20096 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 61/123 (49.59%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 15  RRLFR-ARCRKNAK-----PNSLLEAIAKAS---REGTGFVS-QSEENGVVRIKMVVKKT 74
           R LFR  R R N K      N+L+EAIAK +   +EGT  +S QS+E+GVVR+K++V++ 
Sbjct: 6   RVLFRHGRARMNQKSNLITSNALMEAIAKVNGDHQEGTNVLSHQSQEDGVVRMKILVRRQ 65

Query: 75  DLAQVLE-AMGSDGGRGEGAAPASVSVEQRLALMRRKQLLRAKLAA-----ATWSPALQS 122
           DL QVLE   G    +     P+S+ VEQRL+L+R+K LLRA LAA     ++W PALQS
Sbjct: 66  DLKQVLELTNGGINSQASVVRPSSLCVEQRLSLLRKKHLLRASLAAKRSRQSSWRPALQS 125

The following BLAST results are available for this feature:

BLAST of ClCG02G003900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025124.1	1.3e-47	84.50	hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK1936...	[more]
XP_023511743.1	1.1e-46	85.71	uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo]	[more]
KAG6572129.1	1.6e-45	83.74	hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN43274.1	2.3e-44	80.16	hypothetical protein Csa_020212 [Cucumis sativus]	[more]
CAB4290916.1	3.2e-14	50.00	unnamed protein product [Prunus armeniaca] >CAB4321236.1 unnamed protein product...	[more]

BLAST of ClCG02G003900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G003900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHL7	6.3e-48	84.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K2L8	1.1e-44	80.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1	[more]
A0A6J5VPM4	1.6e-14	50.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51099 PE=4 S...	[more]
A0A314YA00	7.7e-14	49.59	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_106...	[more]
A0A314Z8S5	1.7e-13	49.59	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_200...	[more]

BLAST of ClCG02G003900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148:SF4	OS02G0667300 PROTEIN	coord: 9..122
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 9..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G003900.1	ClCG02G003900.1	mRNA