
ClCG02G003670 (gene) Watermelon (Charleston Gray) v2.5
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGAGTTCTACCAAAAACGACAAAGCTCTCGGAGGGTGACGACATCGGTGGCAGGGCACCAGGTCCCGCTCTACGGCGGGATCTCGGCAATAGGAAATTGGCGGGACCAACGGCACGATGGGGTCGGGGTCGAGGTACCGCTAAACCTTACAGTGGCTGTGAGGTCCAGAGCTTACATTCTAGGGAAGCTGGTGAAGTCTACATTTCATACAACTATTACATGTCCTATCACTCTTAGCACCAAGAAGCTTGGAAAATCTCACTCTTTCAACAATTCTTGCACTTACAATTGA ATGGAGGAGTTCTACCAAAAACGACAAAGCTCTCGGAGGGTGACGACATCGGTGGCAGGGCACCAGGTCCCGCTCTACGGCGGGATCTCGGCAATAGGAAATTGGCGGGACCAACGGCACGATGGGGTCGGGGTCGAGGTACCGCTAAACCTTACAGTGGCTGTGAGGTCCAGAGCTTACATTCTAGGGAAGCTGGTGAAGTCTACATTTCATACAACTATTACATGTCCTATCACTCTTAGCACCAAGAAGCTTGGAAAATCTCACTCTTTCAACAATTCTTGCACTTACAATTGA ATGGAGGAGTTCTACCAAAAACGACAAAGCTCTCGGAGGGTGACGACATCGGTGGCAGGGCACCAGGTCCCGCTCTACGGCGGGATCTCGGCAATAGGAAATTGGCGGGACCAACGGCACGATGGGGTCGGGGTCGAGGTACCGCTAAACCTTACAGTGGCTGTGAGGTCCAGAGCTTACATTCTAGGGAAGCTGGTGAAGTCTACATTTCATACAACTATTACATGTCCTATCACTCTTAGCACCAAGAAGCTTGGAAAATCTCACTCTTTCAACAATTCTTGCACTTACAATTGA MEEFYQKRQSSRRVTTSVAGHQVPLYGGISAIGNWRDQRHDGVGVEVPLNLTVAVRSRAYILGKLVKSTFHTTITCPITLSTKKLGKSHSFNNSCTYN Homology
BLAST of ClCG02G003670 vs. NCBI nr
Match: XP_008447896.1 (PREDICTED: uncharacterized protein LOC103490245 [Cucumis melo]) HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44 Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0
BLAST of ClCG02G003670 vs. NCBI nr
Match: XP_038888376.1 (uncharacterized protein LOC120078225 [Benincasa hispida]) HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43 Identity = 90/96 (93.75%), Postives = 93/96 (96.88%), Query Frame = 0
BLAST of ClCG02G003670 vs. NCBI nr
Match: XP_004144875.1 (uncharacterized protein LOC101215215 [Cucumis sativus] >KGN43297.1 hypothetical protein Csa_020295 [Cucumis sativus]) HSP 1 Score: 184.5 bits (467), Expect = 4.4e-43 Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0
BLAST of ClCG02G003670 vs. NCBI nr
Match: XP_022952376.1 (uncharacterized protein LOC111455080 [Cucurbita moschata]) HSP 1 Score: 181.0 bits (458), Expect = 4.9e-42 Identity = 86/98 (87.76%), Postives = 94/98 (95.92%), Query Frame = 0
BLAST of ClCG02G003670 vs. NCBI nr
Match: XP_022969162.1 (uncharacterized protein LOC111468240 [Cucurbita maxima]) HSP 1 Score: 180.6 bits (457), Expect = 6.4e-42 Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 0
BLAST of ClCG02G003670 vs. ExPASy TrEMBL
Match: A0A1S3BJ42 (uncharacterized protein LOC103490245 OS=Cucumis melo OX=3656 GN=LOC103490245 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 8.7e-45 Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 0
BLAST of ClCG02G003670 vs. ExPASy TrEMBL
Match: A0A0A0K4T2 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G018790 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43 Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0
BLAST of ClCG02G003670 vs. ExPASy TrEMBL
Match: A0A6J1GK23 (uncharacterized protein LOC111455080 OS=Cucurbita moschata OX=3662 GN=LOC111455080 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.4e-42 Identity = 86/98 (87.76%), Postives = 94/98 (95.92%), Query Frame = 0
BLAST of ClCG02G003670 vs. ExPASy TrEMBL
Match: A0A6J1HVK7 (uncharacterized protein LOC111468240 OS=Cucurbita maxima OX=3661 GN=LOC111468240 PE=4 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 3.1e-42 Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 0
BLAST of ClCG02G003670 vs. ExPASy TrEMBL
Match: A0A6J1JK28 (uncharacterized protein LOC111486495 OS=Cucurbita maxima OX=3661 GN=LOC111486495 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.9e-40 Identity = 86/98 (87.76%), Postives = 91/98 (92.86%), Query Frame = 0
BLAST of ClCG02G003670 vs. TAIR 10
Match: AT4G35170.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family ) HSP 1 Score: 89.7 bits (221), Expect = 1.4e-18 Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 0
BLAST of ClCG02G003670 vs. TAIR 10
Match: AT2G41990.1 (CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 71.2 bits (173), Expect = 5.1e-13 Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 0
BLAST of ClCG02G003670 vs. TAIR 10
Match: AT5G42860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45688.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 9.5e-12 Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 0
BLAST of ClCG02G003670 vs. TAIR 10
Match: AT1G45688.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). ) HSP 1 Score: 60.5 bits (145), Expect = 8.9e-10 Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 0
BLAST of ClCG02G003670 vs. TAIR 10
Match: AT3G24600.1 (Late embryogenesis abundant protein, group 2 ) HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06 Identity = 30/93 (32.26%), Postives = 46/93 (49.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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