ClCG02G003596 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G003596
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr02: 3560559 .. 3563644 (+)
RNA-Seq Expression	ClCG02G003596
Synteny	ClCG02G003596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCGCCAACAAAAAGTATAGAAAGAAATATCCAATTTCATGATTCTGTGCTAGTTAGAGTTATCTACTTCTTCAACTTCTTTGTCCCATAAACTCAGCAGCCTTCAAGATTTGCATTTGTCTTTGATTTAGAGATGTTTCTATTAGATTTGATGTTGTTTGCTAGTAGTTTTCAGGTAATTATGAGAAAACGAGTTTTGGAAATTAAAAGTGTACTCAGTAATTTAGAATACATTCTTCCTTCTATTATTCAGAACAAAGTTACATATATATAGGGAACAAAGAAACCCTAGACTAGGTATGTACAATGGCATGGAAGCCTGCTATATAGGGAACAAATATATTCTTCCTTCTATTGTTCAAACCCAAATCCACCCCAGAGACAAACTTAGAAGCCGGATAACTTCTCTTCCCTTTCTTTGTTCTTGGTTTATTTCTTGTATTTTGTCGTTCTAATGTGGGTTTTGTCTATGGAAGCCATGTTAAGCAAGATTTCTCATAGTTTTAGGGTAGATGAATTCTTAGGTTTAAATTGTTGAACACCTTGCTTCTTGAATATTAATTTACATTTACGCTTTTTAGCATTACCGTTCTTAATGCTTTTGAATGTTTGATCGATGTTTGAATGGTTCTATGATTTAAATCTTGCTTGAAAAAGTATGTTTAAATTAGATCATGCATGCTAGACTATTGTTTGAAAACACAAAAAGTAATTGGATAACAGTAGAGGTTGTTAATGAAGGTTTTTAATTCTTTGCTTAATCAACTAGTTTCAAGAAATTAGTAATTAGGGTTTAAGTAAAAGAAAATATTGCTTTCGAAAGATTCAATCCGGATAAAAAACTTCTAGATCTAGGTGTCTTGTTAATTACTTCAAGAGTCAAACAATTGTGTTTAATAATACCTTTGATGAAATCTATTTCCTGAAACGACTCTTAGTTGATAATTTCCATATCTTGATCACTTTTATTTGCTTTCTTAGATTAGTTTAGCTTTAGTGTCATTACAATCCGGTCCCCTAAATAAAATTGGAAGAACCTTTGAATAGCTAAAAGAATAATCAAACCGATTCCCTGAGAACGATGCTTGGCCTTTCAAGCCGTTTTAACTATATTATAACTTGACCTATACACTTGCGGTAACACCAAGTTGTGGCACATCAATAAGTTACTTCTCACCCAACAAACTCTTGTTAATGAGAGTGATAAGAAATGTATTGATGACTTGCTAGAAAGATCTCTAAGACTCTTAAAGTTGTTTGGTGTTGCTAAGGATGCATTGGTGCAAACACAAGAATGTGCACATGAACTTGAATTAGTTTTCTATAGAAGAAGAGGTGAAGGAATTATTCCAAGTGATCTTCAGATATACTTGAATTCTAGGAAAATAATTAAGAAGACAGTCCACAAGGACTTGAAAGGAATCAAAAGCAACTGTTCTAAAATAAAAGTGAAGAAAGTTCAGCAACCATTAACTTGTTAAAATATGTAGAAGCAATCACATTTAGCACCGTTGAATCAGTATTGTCCTTCCTAGCAAGACCAAAGTTGAGTCCATGGTCTTTGGTCTCCAAGATAGTGCAACCCCAAAGAGTAGCTTGGAAAGGAGAAGATGCATACACAAACAAAATAGAAATGGTCAATGGCACACTCTATTCAATTGCCAGTCAAACAACACATAAATCCAATTTCCTTCTGCAGGTCGAAAACGTGCATGTCTCATTGAATAAACTTGAGCCAAGTATCAGGATCTTGAAGAAAGGCATCTCATCAAAAACAGTCTCACTTCTGAAGATCCTAAATCACTAAGGCTAGAACTTAGATAGTAGTATGATGGCCATTGCCATTAGAATTCACTTTTGATAAATGTAAACACCAAATTCCGTATATATACCTTTCTGTGTCTATTAGGAATTGTTAAATTGCCGATTGACCCAAAAACTTAAGCTGATGTGCAAAGGAAAATTTAATCTTATATCATCAAAGACTCTTCCTAATGCAGGGTTTGAACAAAGAATCTCCTGAACCAACTTGCTCTGACATGTTAAATCGTCAATTAACCCAAAAACTTAAGTCAATGGATGAAGGCAAGTTTAAACTTATATCATCTAAGAGGAATAAGTCTTTTGTGATCAAAATCCAGATTGTAAGTTTACTATGTCTTCTTTCCAAACTAACTGTTCTGCAGTTTTTATATTATTCATACTGTGAAATGTTTGAAGGATGGAAAAATACACTATCCTTTATCATCTAAGAGTGGACATCAAAACCAAAAATACTGAAATAATTAAGAAACTGAACCAAACCAAAATTTTGGCTTTTATAATTAATGCAGTTCGGTTTGGTTCAGTTTAGGATTCAAAACCAAACCCCAAAACAGAATCTGACCGTGTTTGTGCATTATATATATTGCATTATATATATAAAGTAAAAGGCAGGAAAACAGAGGGGTCATTGTTTTTTTCTTTTTTCTTTTTTTAAATAAATAGTTGTGAGTCTGAGGAGACCATGAAACCTAAAACCAAACCGAATAAAACCAAAAAAGTGCGGTTAGTTCAATTCTGACCAAATATGTGGTTTTACCTATCACTTGAACTATATTTTATTAACTAGAGATCAATTAGTAACCACACAGATTAGCTAATGAAACCAAGTTTTTGAATCTTGCTGTCAAGGAATCATATCCTTGGTGTATGATACTAGCTATGTCAACAGCACTCGTGCACTTCATAATTTATAAATTTCCCAGCAGAAAATTGCAGATTATGTTATATGTGTATGCTTAAACATTAAAGAAATAAATAATGAACTAAAAACCTGGTGATGGGGTGACATATCACAAACATGGCCTGACATATAGTTGAAAATAGATATATAATTTAATACACGTGTGAAGAAACAATCTTGTATTTATCAAGAGAGGCCCCAGTCACCTTTTCTTGATAAGAAAATAATCTTGAAGCCAATAGCTTGTATATGGAGAGATTTCTTATGCAATTAGAACAAATTAATTTAATTAGTTAATGTGCTGTAGACTCGGTGGAGTAGAGACATTGCCAAAACATCACTGCAAAGTTGTGTAG

mRNA sequence

ATGAAGCCGCCAACAAAAAAAGCAATCACATTTAGCACCGTTGAATCAGTATTGTCCTTCCTAGCAAGACCAAAGTTGAGTCCATGGTCTTTGGTCTCCAAGATAGTGCAACCCCAAAGAGTAGCTTGGAAAGGAGAAGATGCATACACAAACAAAATAGAAATGGTCAATGGCACACTCTATTCAATTGCCAGTCAAACAACACATAAATCCAATTTCCTTCTGCAGGTCGAAAACTTCGGTTTGGTTCAGTTTAGGATTCAAAACCAAACCCCAAAACAGAATCTGACCGTTTGTGAGTCTGAGGAGACCATGAAACCTAAAACCAAACCGAATAAAACCAAAAAAGTGCGACTCGGTGGAGTAGAGACATTGCCAAAACATCACTGCAAAGTTGTGTAG

Coding sequence (CDS)

ATGAAGCCGCCAACAAAAAAAGCAATCACATTTAGCACCGTTGAATCAGTATTGTCCTTCCTAGCAAGACCAAAGTTGAGTCCATGGTCTTTGGTCTCCAAGATAGTGCAACCCCAAAGAGTAGCTTGGAAAGGAGAAGATGCATACACAAACAAAATAGAAATGGTCAATGGCACACTCTATTCAATTGCCAGTCAAACAACACATAAATCCAATTTCCTTCTGCAGGTCGAAAACTTCGGTTTGGTTCAGTTTAGGATTCAAAACCAAACCCCAAAACAGAATCTGACCGTTTGTGAGTCTGAGGAGACCATGAAACCTAAAACCAAACCGAATAAAACCAAAAAAGTGCGACTCGGTGGAGTAGAGACATTGCCAAAACATCACTGCAAAGTTGTGTAG

Protein sequence

MKPPTKKAITFSTVESVLSFLARPKLSPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYSIASQTTHKSNFLLQVENFGLVQFRIQNQTPKQNLTVCESEETMKPKTKPNKTKKVRLGGVETLPKHHCKVV

Homology

[Close]

BLAST of ClCG02G003596 vs. NCBI nr
Match: XP_022135909.1 (uncharacterized protein LOC111007747 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLA----RPKLSPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +AIT+STVESVLSF+A      KLS WSLVSK+VQP+RVA   ED Y N++EMV+ TL S
Sbjct: 176 EAITYSTVESVLSFIAGSKLPSKLSRWSLVSKVVQPKRVACNSEDTYANEVEMVDATLNS 235

Query: 67  IASQTTHKSNFLLQVEN 80
           IAS TT KSNFL+QVEN
Sbjct: 236 IASHTTDKSNFLMQVEN 252

[Close]

BLAST of ClCG02G003596 vs. NCBI nr
Match: XP_022135735.1 (uncharacterized protein LOC111007625 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-13
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARPKL----SPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +A+TFS++ES+LSF+A PKL    S WSLVSK++QP+RVA K ED   N+ EMV+  LYS
Sbjct: 172 EAVTFSSIESLLSFIAGPKLPSKMSRWSLVSKLMQPKRVASKDEDTNGNEAEMVDVALYS 231

Query: 67  IASQTTHKSNFLLQVENFGLVQFRIQNQTPKQNLTVCESEETMK 107
           I   T+HKS+FL+QVEN       +QN   K  L++ + E+ ++
Sbjct: 232 I---TSHKSDFLVQVEN-------VQNSLRKLELSIPDLEDDLE 265

[Close]

BLAST of ClCG02G003596 vs. NCBI nr
Match: XP_022136146.1 (uncharacterized protein LOC111007910 [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-13
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARPKL----SPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +A++++ +ES+LSF+A PKL    S WSLVSKIVQP+RVA + E+A TN++ +V+ TLYS
Sbjct: 179 EAVSYNVIESLLSFIAGPKLPSNSSRWSLVSKIVQPKRVACEVEEASTNEVAIVDATLYS 238

Query: 67  IASQTTHKSNFLLQVEN 80
           +ASQ T KS+ L+QV+N
Sbjct: 239 VASQKTKKSDLLVQVDN 255

[Close]

BLAST of ClCG02G003596 vs. NCBI nr
Match: XP_022953010.1 (uncharacterized protein LOC111455527 [Cucurbita moschata] >KAG6572162.1 hypothetical protein SDJN03_28890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 8.4e-13
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARP----KLSPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +A+T+STVESVLSF+A P    K+S WSLVSK+VQP+RVA K E AY N++EM++G LYS
Sbjct: 175 EAVTYSTVESVLSFIAGPKVPSKVSRWSLVSKLVQPKRVASKDEGAYANEVEMLDGILYS 234

Query: 67  IASQTTHKSNFLLQ 77
           +AS TT +S F LQ
Sbjct: 235 VASHTTDES-FSLQ 247

[Close]

BLAST of ClCG02G003596 vs. NCBI nr
Match: XP_004144941.1 (uncharacterized protein LOC101220720 [Cucumis sativus] >KGN43319.1 hypothetical protein Csa_020256 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARPKL-SPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYSIAS 66
           +AITFST+ESVLSF+A PKL S WS VSK+VQ +RVA K EDAY N++EMV+ TL +IAS
Sbjct: 176 EAITFSTIESVLSFIAGPKLPSRWSFVSKLVQSKRVANKDEDAYENEVEMVDATLSAIAS 235

Query: 67  QTTHKS 72
            TT KS
Sbjct: 236 HTTDKS 241

[Close]

BLAST of ClCG02G003596 vs. ExPASy TrEMBL
Match: A0A6J1C2T6 (uncharacterized protein LOC111007747 OS=Momordica charantia OX=3673 GN=LOC111007747 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-17
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLA----RPKLSPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +AIT+STVESVLSF+A      KLS WSLVSK+VQP+RVA   ED Y N++EMV+ TL S
Sbjct: 176 EAITYSTVESVLSFIAGSKLPSKLSRWSLVSKVVQPKRVACNSEDTYANEVEMVDATLNS 235

Query: 67  IASQTTHKSNFLLQVEN 80
           IAS TT KSNFL+QVEN
Sbjct: 236 IASHTTDKSNFLMQVEN 252

[Close]

BLAST of ClCG02G003596 vs. ExPASy TrEMBL
Match: A0A6J1C1V9 (uncharacterized protein LOC111007625 OS=Momordica charantia OX=3673 GN=LOC111007625 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARPKL----SPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +A+TFS++ES+LSF+A PKL    S WSLVSK++QP+RVA K ED   N+ EMV+  LYS
Sbjct: 172 EAVTFSSIESLLSFIAGPKLPSKMSRWSLVSKLMQPKRVASKDEDTNGNEAEMVDVALYS 231

Query: 67  IASQTTHKSNFLLQVENFGLVQFRIQNQTPKQNLTVCESEETMK 107
           I   T+HKS+FL+QVEN       +QN   K  L++ + E+ ++
Sbjct: 232 I---TSHKSDFLVQVEN-------VQNSLRKLELSIPDLEDDLE 265

[Close]

BLAST of ClCG02G003596 vs. ExPASy TrEMBL
Match: A0A6J1C2Q0 (uncharacterized protein LOC111007910 OS=Momordica charantia OX=3673 GN=LOC111007910 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-13
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARPKL----SPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +A++++ +ES+LSF+A PKL    S WSLVSKIVQP+RVA + E+A TN++ +V+ TLYS
Sbjct: 179 EAVSYNVIESLLSFIAGPKLPSNSSRWSLVSKIVQPKRVACEVEEASTNEVAIVDATLYS 238

Query: 67  IASQTTHKSNFLLQVEN 80
           +ASQ T KS+ L+QV+N
Sbjct: 239 VASQKTKKSDLLVQVDN 255

[Close]

BLAST of ClCG02G003596 vs. ExPASy TrEMBL
Match: A0A6J1GNH6 (uncharacterized protein LOC111455527 OS=Cucurbita moschata OX=3662 GN=LOC111455527 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-13
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARP----KLSPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYS 66
           +A+T+STVESVLSF+A P    K+S WSLVSK+VQP+RVA K E AY N++EM++G LYS
Sbjct: 175 EAVTYSTVESVLSFIAGPKVPSKVSRWSLVSKLVQPKRVASKDEGAYANEVEMLDGILYS 234

Query: 67  IASQTTHKSNFLLQ 77
           +AS TT +S F LQ
Sbjct: 235 VASHTTDES-FSLQ 247

[Close]

BLAST of ClCG02G003596 vs. ExPASy TrEMBL
Match: A0A0A0K2S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G023930 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.1e-13
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 7   KAITFSTVESVLSFLARPKL-SPWSLVSKIVQPQRVAWKGEDAYTNKIEMVNGTLYSIAS 66
           +AITFST+ESVLSF+A PKL S WS VSK+VQ +RVA K EDAY N++EMV+ TL +IAS
Sbjct: 176 EAITFSTIESVLSFIAGPKLPSRWSFVSKLVQSKRVANKDEDAYENEVEMVDATLSAIAS 235

Query: 67  QTTHKS 72
            TT KS
Sbjct: 236 HTTDKS 241

The following BLAST results are available for this feature:

BLAST of ClCG02G003596 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135909.1	1.3e-16	67.53	uncharacterized protein LOC111007747 [Momordica charantia]	[more]
XP_022135735.1	3.8e-13	49.04	uncharacterized protein LOC111007625 [Momordica charantia]	[more]
XP_022136146.1	6.4e-13	55.84	uncharacterized protein LOC111007910 [Momordica charantia]	[more]
XP_022953010.1	8.4e-13	62.16	uncharacterized protein LOC111455527 [Cucurbita moschata] >KAG6572162.1 hypothet...	[more]
XP_004144941.1	1.9e-12	68.18	uncharacterized protein LOC101220720 [Cucumis sativus] >KGN43319.1 hypothetical ...	[more]

BLAST of ClCG02G003596 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G003596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2T6	6.1e-17	67.53	uncharacterized protein LOC111007747 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1C1V9	1.8e-13	49.04	uncharacterized protein LOC111007625 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1C2Q0	3.1e-13	55.84	uncharacterized protein LOC111007910 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1GNH6	4.1e-13	62.16	uncharacterized protein LOC111455527 OS=Cucurbita moschata OX=3662 GN=LOC1114555...	[more]
A0A0A0K2S2	9.1e-13	68.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G023930 PE=4 SV=1	[more]

BLAST of ClCG02G003596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004320	Protein of unknown function DUF241, plant	PFAM	PF03087	DUF241	coord: 7..75 e-value: 2.7E-5 score: 24.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G003596.1	ClCG02G003596.1	mRNA