ClCG02G002546 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G002546
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Pectin lyase-like superfamily protein
Location	CG_Chr02: 2586457 .. 2586783 (-)
RNA-Seq Expression	ClCG02G002546
Synteny	ClCG02G002546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGAAAAATCTCAACGAGAGATGATTGTGTGTATGTTAGAGACAACAACAAGAAAGTAACTATTACTGATATAACTTGCGGACTAGGACATGTTAGCATAGGAAGTTTAGGCAAGTACGCCAAGCAAAAAGACATGATAGTAGTTGTGGTGAAAACATGCAAATTAATCAATACTTCAAACGGTGTTAGGATCAAAACATGGTCAGTATCTGCTGGCGCATTCACAACCTCTGACATGCATTTTGAAGATATTGAAATGGTTAGCGTTAGTAATCCTGTTATTATAAATCAAGAACATTGTCCATGGAATCAATGCAACTAA

mRNA sequence

ATGAACAGAAAAATCTCAACGAGAGATGATTGTGTGTATGTTAGAGACAACAACAAGAAAGTAACTATTACTGATATAACTTGCGGACTAGGACATGTTAGCATAGGAAGTTTAGGCAAGTACGCCAAGCAAAAAGACATGATAGTAGTTGTGGTGAAAACATGCAAATTAATCAATACTTCAAACGGTGTTAGGATCAAAACATGGTCAGTATCTGCTGGCGCATTCACAACCTCTGACATGCATTTTGAAGATATTGAAATGGTTAGCGTTAGTAATCCTGTTATTATAAATCAAGAACATTGTCCATGGAATCAATGCAACTAA

Coding sequence (CDS)

ATGAACAGAAAAATCTCAACGAGAGATGATTGTGTGTATGTTAGAGACAACAACAAGAAAGTAACTATTACTGATATAACTTGCGGACTAGGACATGTTAGCATAGGAAGTTTAGGCAAGTACGCCAAGCAAAAAGACATGATAGTAGTTGTGGTGAAAACATGCAAATTAATCAATACTTCAAACGGTGTTAGGATCAAAACATGGTCAGTATCTGCTGGCGCATTCACAACCTCTGACATGCATTTTGAAGATATTGAAATGGTTAGCGTTAGTAATCCTGTTATTATAAATCAAGAACATTGTCCATGGAATCAATGCAACTAA

Protein sequence

MNRKISTRDDCVYVRDNNKKVTITDITCGLGHVSIGSLGKYAKQKDMIVVVVKTCKLINTSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN

Homology

[Close]

BLAST of ClCG02G002546 vs. NCBI nr
Match: XP_031744814.1 (exopolygalacturonase-like [Cucumis sativus] >XP_031744815.1 LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus] >XP_031744816.1 exopolygalacturonase-like [Cucumis sativus] >XP_031744818.1 exopolygalacturonase-like [Cucumis sativus] >KAE8645716.1 hypothetical protein Csa_020252 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 79/109 (72.48%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KIST DDCV V D+NK+VTIT++TCG GH +S+GSLGKY K+KD++ V VK CKLIN
Sbjct: 201 LDSKISTGDDCVSVGDSNKQVTITNVTCGPGHGISVGSLGKYTKEKDVVGVTVKACKLIN 260

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SAGAF  SDMHFEDIEM +VSNPVII+QE+CPWNQCN
Sbjct: 261 TTNGVRIKTWPDSAGAFIASDMHFEDIEMQNVSNPVIIDQEYCPWNQCN 309

[Close]

BLAST of ClCG02G002546 vs. NCBI nr
Match: XP_031744817.1 (exopolygalacturonase-like [Cucumis sativus] >KAE8645715.1 hypothetical protein Csa_020330 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-38
Identity = 79/109 (72.48%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KIST DDCV V D+NK+VTIT++TCG GH +S+GSLGKY K+KD++ V VK CKLIN
Sbjct: 201 LDSKISTGDDCVSVGDSNKQVTITNVTCGPGHGISVGSLGKYTKEKDVVGVSVKACKLIN 260

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SAGAF  SDMHFEDIEM +VSNPVII+QE+CPWNQCN
Sbjct: 261 TTNGVRIKTWPDSAGAFIASDMHFEDIEMQNVSNPVIIDQEYCPWNQCN 309

[Close]

BLAST of ClCG02G002546 vs. NCBI nr
Match: XP_022136075.1 (exopolygalacturonase-like [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 8.9e-37
Identity = 76/109 (69.72%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N  I T DDC+ V D+N ++TI+D+TCG GH +SIGSLGKY+K+KD+I V VK CKL +
Sbjct: 216 LNTNIGTGDDCISVGDSNSQITISDVTCGPGHGISIGSLGKYSKEKDVIGVFVKKCKLTS 275

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SAGAF  SDMHFEDIEMV+VSNPVII+QE+CPWNQCN
Sbjct: 276 TTNGVRIKTWPDSAGAFIASDMHFEDIEMVNVSNPVIIDQEYCPWNQCN 324

[Close]

BLAST of ClCG02G002546 vs. NCBI nr
Match: KAA0059167.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >KAA0059172.1 exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK19347.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 3.4e-36
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KI+T DDCV V D+NK+VTIT++TCG GH +SIGSLGKY K+KD++ V VK CK+ N
Sbjct: 204 LDSKIATGDDCVSVGDSNKQVTITNVTCGPGHGISIGSLGKYTKEKDVVGVTVKACKIFN 263

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SA AF  SDMHFEDIEM +VSNP+II+QE+CPWNQCN
Sbjct: 264 TTNGVRIKTWPDSAVAFMASDMHFEDIEMENVSNPIIIDQEYCPWNQCN 312

[Close]

BLAST of ClCG02G002546 vs. NCBI nr
Match: XP_008466943.1 (PREDICTED: polygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 3.4e-36
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KI+T DDCV V D+NK+VTIT++TCG GH +SIGSLGKY K+KD++ V VK CK+ N
Sbjct: 63  LDSKIATGDDCVSVGDSNKQVTITNVTCGPGHGISIGSLGKYTKEKDVVGVTVKACKIFN 122

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SA AF  SDMHFEDIEM +VSNP+II+QE+CPWNQCN
Sbjct: 123 TTNGVRIKTWPDSAVAFMASDMHFEDIEMENVSNPIIIDQEYCPWNQCN 171

[Close]

BLAST of ClCG02G002546 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-28
Identity = 56/109 (51.38%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N  I T DDCV + D +K++T+  + CG GH +S+GSLGK+  ++++  + VK C L  
Sbjct: 211 LNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCTLTA 270

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T NGVRIKTW  + G  T SD+HFEDI M +V NPVII+QE+ PWNQC+
Sbjct: 271 TDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCS 319

[Close]

BLAST of ClCG02G002546 vs. ExPASy Swiss-Prot
Match: P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-27
Identity = 56/109 (51.38%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N KI+T DDC+ V D  K + I  + CG GH +S+GSLG+Y  ++D+  + VK C L  
Sbjct: 202 LNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEG 261

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           TSNG+RIKTW  +A   T + +HFEDI +  VSNP++I+QE+CPWNQCN
Sbjct: 262 TSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCN 310

[Close]

BLAST of ClCG02G002546 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-24
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N +I T DDC+ + D +K + IT+ITCG GH +S+GSLG+Y  ++ ++ + VK C +  
Sbjct: 171 INTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITG 230

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQC 108
           + NGVRIKTW  S      S+MHF+DI M SV  P++I+Q +CP+NQC
Sbjct: 231 SQNGVRIKTWPKSEPG-EASEMHFQDITMNSVGTPILIDQGYCPYNQC 277

[Close]

BLAST of ClCG02G002546 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-24
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 5   ISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLINTSNG 64
           I T DDC+ + D  K + I +ITCG GH +SIGSLGK+  ++ +  + +  C + NTSNG
Sbjct: 217 IKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNG 276

Query: 65  VRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQC 108
            RIKTW    G    S++HFEDI M +VS+P++I+Q++CPWN+C
Sbjct: 277 ARIKTWPGEHGG-AVSEIHFEDITMNNVSSPILIDQQYCPWNKC 319

[Close]

BLAST of ClCG02G002546 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-24
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 5   ISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLINTSNG 64
           I T DDC+ + D  K + I +ITCG GH +SIGSLGK+  ++ +  + +  C + NTSNG
Sbjct: 217 IKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTITNTSNG 276

Query: 65  VRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQC 108
            RIKTW    G    S++HFEDI M +VS+P++I+Q++CPWN+C
Sbjct: 277 ARIKTWPGEHGG-AVSEIHFEDITMNNVSSPILIDQQYCPWNKC 319

[Close]

BLAST of ClCG02G002546 vs. ExPASy TrEMBL
Match: A0A0A0K6J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037450 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 79/109 (72.48%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KIST DDCV V D+NK+VTIT++TCG GH +S+GSLGKY K+KD++ V VK CKLIN
Sbjct: 136 LDSKISTGDDCVSVGDSNKQVTITNVTCGPGHGISVGSLGKYTKEKDVVGVTVKACKLIN 195

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SAGAF  SDMHFEDIEM +VSNPVII+QE+CPWNQCN
Sbjct: 196 TTNGVRIKTWPDSAGAFIASDMHFEDIEMQNVSNPVIIDQEYCPWNQCN 244

[Close]

BLAST of ClCG02G002546 vs. ExPASy TrEMBL
Match: A0A6J1C2U8 (exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111007858 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.3e-37
Identity = 76/109 (69.72%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N  I T DDC+ V D+N ++TI+D+TCG GH +SIGSLGKY+K+KD+I V VK CKL +
Sbjct: 216 LNTNIGTGDDCISVGDSNSQITISDVTCGPGHGISIGSLGKYSKEKDVIGVFVKKCKLTS 275

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SAGAF  SDMHFEDIEMV+VSNPVII+QE+CPWNQCN
Sbjct: 276 TTNGVRIKTWPDSAGAFIASDMHFEDIEMVNVSNPVIIDQEYCPWNQCN 324

[Close]

BLAST of ClCG02G002546 vs. ExPASy TrEMBL
Match: A0A5D3D708 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00680 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KI+T DDCV V D+NK+VTIT++TCG GH +SIGSLGKY K+KD++ V VK CK+ N
Sbjct: 204 LDSKIATGDDCVSVGDSNKQVTITNVTCGPGHGISIGSLGKYTKEKDVVGVTVKACKIFN 263

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SA AF  SDMHFEDIEM +VSNP+II+QE+CPWNQCN
Sbjct: 264 TTNGVRIKTWPDSAVAFMASDMHFEDIEMENVSNPIIIDQEYCPWNQCN 312

[Close]

BLAST of ClCG02G002546 vs. ExPASy TrEMBL
Match: A0A5A7UTD3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00800 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KI+T DDCV V D+NK+VTIT++TCG GH +SIGSLGKY K+KD++ V VK CK+ N
Sbjct: 204 LDSKIATGDDCVSVGDSNKQVTITNVTCGPGHGISIGSLGKYTKEKDVVGVTVKACKIFN 263

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SA AF  SDMHFEDIEM +VSNP+II+QE+CPWNQCN
Sbjct: 264 TTNGVRIKTWPDSAVAFMASDMHFEDIEMENVSNPIIIDQEYCPWNQCN 312

[Close]

BLAST of ClCG02G002546 vs. ExPASy TrEMBL
Match: A0A5D3BSV2 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00060 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           ++ KI+T DDCV V D+NK+VTIT++TCG GH +SIGSLGKY K+KD++ V VK CK+ N
Sbjct: 204 LDSKIATGDDCVSVGDSNKQVTITNVTCGPGHGISIGSLGKYTKEKDVVGVTVKACKIFN 263

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T+NGVRIKTW  SA AF  SDMHFEDIEM +VSNP+II+QE+CPWNQCN
Sbjct: 264 TTNGVRIKTWPDSAVAFMASDMHFEDIEMENVSNPIIIDQEYCPWNQCN 312

[Close]

BLAST of ClCG02G002546 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-28
Identity = 56/109 (51.38%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N  IST DDC+ V D  K + +  +TCG GH +S+GSLG+Y  ++D+  + V  C L  
Sbjct: 202 LNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQE 261

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T NG+RIKTW  +A + T SD+HFEDI +  VSNP++I+QE+CPWNQCN
Sbjct: 262 TDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCN 310

[Close]

BLAST of ClCG02G002546 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-28
Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N KI+T DDC+ V D  K + + ++ CG GH +S+GSLG+Y  ++D+  + V  C L  
Sbjct: 203 LNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTLQG 262

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T NG+RIKTW  +A A T S +HFE+I + +VSNP++I+QE+CPWNQCN
Sbjct: 263 TDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCN 311

[Close]

BLAST of ClCG02G002546 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-27
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N  IST DDCV V D  K + +  +TCG GH +SIGSLG+Y+ ++++  + +  C L  
Sbjct: 202 INSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQE 261

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T NG+RIKTW  +A   T SD+HFE+I + +VSNP++I+QE+CPWNQCN
Sbjct: 262 TDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCN 310

[Close]

BLAST of ClCG02G002546 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-26
Identity = 53/109 (48.62%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MNRKISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLIN 60
           +N +IST DDCV V D    + + ++ CG GH +S+GSLG+Y  ++D+  + V  C L  
Sbjct: 203 INSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCTLQE 262

Query: 61  TSNGVRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQCN 109
           T NG+RIKTW  +A + T S++HFE+I + +VSNP++I+QE+CPWNQCN
Sbjct: 263 TDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCN 311

[Close]

BLAST of ClCG02G002546 vs. TAIR 10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 5.7e-26
Identity = 52/104 (50.00%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 5   ISTRDDCVYVRDNNKKVTITDITCGLGH-VSIGSLGKYAKQKDMIVVVVKTCKLINTSNG 64
           I+T DDCV +   N ++TIT I CG GH +S+GSLG+Y  +KD+  +VVK CK+  T+NG
Sbjct: 222 IATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLGRYPNEKDVNGLVVKDCKISGTTNG 281

Query: 65  VRIKTWSVSAGAFTTSDMHFEDIEMVSVSNPVIINQEHCPWNQC 108
           +RIKTW+ S G    ++M FE+I M +V+NP+II+Q +CP++ C
Sbjct: 282 IRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSC 325

The following BLAST results are available for this feature:

BLAST of ClCG02G002546 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744814.1	2.8e-38	72.48	exopolygalacturonase-like [Cucumis sativus] >XP_031744815.1 LOW QUALITY PROTEIN:...	[more]
XP_031744817.1	4.7e-38	72.48	exopolygalacturonase-like [Cucumis sativus] >KAE8645715.1 hypothetical protein C...	[more]
XP_022136075.1	8.9e-37	69.72	exopolygalacturonase-like [Momordica charantia]	[more]
KAA0059167.1	3.4e-36	68.81	exopolygalacturonase-like [Cucumis melo var. makuwa] >KAA0059172.1 exopolygalact...	[more]
XP_008466943.1	3.4e-36	68.81	PREDICTED: polygalacturonase-like, partial [Cucumis melo]	[more]

BLAST of ClCG02G002546 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40312	6.0e-28	51.38	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P35337	1.3e-27	51.38	Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P24548	2.4e-24	47.22	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q39766	5.2e-24	48.08	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	5.2e-24	48.08	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]

BLAST of ClCG02G002546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6J6	1.3e-38	72.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037450 PE=3 SV=1	[more]
A0A6J1C2U8	4.3e-37	69.72	exopolygalacturonase-like OS=Momordica charantia OX=3673 GN=LOC111007858 PE=3 SV...	[more]
A0A5D3D708	1.6e-36	68.81	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7UTD3	1.6e-36	68.81	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3BSV2	1.6e-36	68.81	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of ClCG02G002546 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07820.1	2.1e-28	51.38	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	6.1e-28	49.54	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	2.3e-27	50.46	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	1.2e-26	48.62	Pectin lyase-like superfamily protein	[more]
AT4G18180.1	5.7e-26	50.00	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..108 e-value: 2.6E-24 score: 87.6
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 2..108 e-value: 4.6E-29 score: 101.5
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..108
None	No IPR available	PANTHER	PTHR31375:SF132	OS06G0509600 PROTEIN	coord: 2..108
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 2..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G002546.1	ClCG02G002546.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity