ClCG02G002480 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G002480
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionglycine-rich protein DC7.1-like
LocationCG_Chr02: 2516438 .. 2518744 (+)
RNA-Seq ExpressionClCG02G002480
SyntenyClCG02G002480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCAGTGAGTTTCATTTCCACACCTTTATATTAGATGATACATTGCAATTCTTTAATTTTACACTCATTTAATTACTGTTATACATACGTTGATTCTTTTGATAACATAGTGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGGTGCTGTATTGATGAAGAGCCCCAAGCTATGCCCAGCAACTAAAGTACATGTTGTTGCTTCAAATAAAGGGCTTTAATTTCTGTAGTTGATGCTTTGCTACAGTTTGAATGTTTTTAAGTTGATAAATGCATATGTTTTGAGATTAATTAGTATAAGTTAATCTCAGTACCATGACAAGTACATTTCTCCAATGGCTTTTGTGTCAATTGGTTATGTCATTAATCTATCAAAATCTCCTTACAAGTACTATTTTGTTTGTTTGATTGGAGCTACCCAGTTAAATCTATGTTGATTGAATAAAACAATGTTTTTGGAGTGATCAATGCAACAATTTTCACTTTTTCCAACGTCGGAAAAAGTACTAAAAATGTCGAGAAAAGTTATGTCGACGCATTTTTCTGCATTAGCATAACCGTTGACGTATCCAAATCGGGAGAAGTACTTCTCGACGAAAAAAATATTTTTATTGATAAAAGTATACTTTTGTCGATACAATATTGCATTGGCAAATAAACTTACAACGTGCCGCTGCCAGCGTTGTTGGAGAGTGCGGCTGCTGCATCGGAGGAGCGTGCAGCCGCAGGACCTCCAAGATTGCAAAGAAAAACTTGATTGGGGGAGAGGTGGAAGAAAAGATGAGTGAGGAAAAGTGGAGTGAGAAAGGAAAATGTGAGGAAAAGAAAAGTTGGGTAAAATTAAAGAAAATTTGATATATAAAAAAATTTTGATTTTTTTATAAAATTTTTGCAATGATTTTATAAAATTTGATAACAAGTAAAAATTCTTGTAGGGTGATCTTGAAATTTAGAAAAGTGATTTTGACCATATAAATCTAAATTGATTTGAAAGTAGTTAGTTGACAACTGAAAAGCATGTCTATTTTTGTAAAAAAAAAATAAAAAAAAAATTACAGATACATGAATTTACTTGTTTGATTGGACAAATATCAATGGAGCACACGCATGTGGAGTGAAGTTTTCGTACCACTCTAAATACATTTTAGTTTTTACAAATGTCCATAAAATTATGGTATATATATAAATACATATTGATGTAGCATCTAAATTAAGTAATATTAATTATAAAATTACACTAAACATTTATATAATTTCTTTGAGAAAAACGTTTATCACATTAACCAACCTAAAATATATAAGGAAATAATGAAATTTGAAATATTTATTAAAGCTTCTTAAACTAAAACACAACAAAAATCATTAATTTTCTTTTTAAAAAATTAATAAGGATCAGAAAATTATTTATGTATTTAAATGTGTATTTATATGAGAGAAAAATTAAAAATAGAATTAATGTTTTAAATTTATTTTAAGTGAAAAAAAAACAATATTGATATATGAAATGAAAAAATAAAAAATAAAAAAAAATAAAAAAAAAAACGGAACAAGTATATGTACGTATATACAAAAATTCAATTGAGCGTCTCCCTTGCCCGTGCATCCATCGGCTCCGAACTTTGAATGTTGTTAGGATCAAAACATTGTCAAATTTTGCTTGATGGATGAGGAGATCTCATACTCTTTATAAGAGGCATGGTTTTTATTGTCAATTAGCTTTGAAATGGAATTGTAATATGATATCTAAGTCCCTTAAAAAAAAACCCTAATAAGAACCATATAAACAATATGCTTGCATGTCTCAAATGTCAAGTTTGTTAATATTGTCTAAAATATATAACTTCACATTTTGTATGGTCGAGTCACTTGACGCTTTAATTAATGTCAGACATGTTGATTACAAGAATAACATAGTAGAAGAAACTATGATGAAAACGGGAGCGGAGTTGATGATGTCAATTGTCAAGCGTTGCAGTTTCGGAGGACACTTTAGATTCTGGTTGTTGTCACCACCACGACGGTGGTTGCAGCCGGTGCCGCAGTTCTGCTGGTGAGGCTGTTGATGCAGAGCCCCAAGCCAAGCCTAACAACTGA

mRNA sequence

ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGCGTTGTTGGAGAGTGCGGCTGCTGCATCGGAGGAGCGTGCAGCCGCAGGACCTCCAAGATTGCAAAGAAAAACTTGATTGGGGGAGAGGTGGAAGAAAAGATGAGTGAGGAAAAGTGGAGTGAGAAAGGAAAATTTTCGGAGGACACTTTAGATTCTGGTTGTTGTCACCACCACGACGGTGGTTGCAGCCGGTGCCGCAGTTCTGCTGGTGAGGCTGTTGATGCAGAGCCCCAAGCCAAGCCTAACAACTGA

Coding sequence (CDS)

ATGAGTTCCAAGGCTTTCATCTTCCTCGGTCTTCTTTTCGTCATCGTCGTCGTCCTCTCCTCGGAGGAGGTAACCGCGATTACGGCAAGGGATGTGAAATTCATGAAAGAAGCTATGATGGAAACTGATGAAGTTGACGATGTCAAGCGCCACGGTTTTGGAGGAGGGCAGGCTATATCCGTTGCCAATAATGTATGCCTCAACCGTTGCGCCCACGGTTGTTGCAGCTGCGTCCGCGGCCGTTGCATCAGCGTTGTTGGAGAGTGCGGCTGCTGCATCGGAGGAGCGTGCAGCCGCAGGACCTCCAAGATTGCAAAGAAAAACTTGATTGGGGGAGAGGTGGAAGAAAAGATGAGTGAGGAAAAGTGGAGTGAGAAAGGAAAATTTTCGGAGGACACTTTAGATTCTGGTTGTTGTCACCACCACGACGGTGGTTGCAGCCGGTGCCGCAGTTCTGCTGGTGAGGCTGTTGATGCAGAGCCCCAAGCCAAGCCTAACAACTGA

Protein sequence

MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAISVANNVCLNRCAHGCCSCVRGRCISVVGECGCCIGGACSRRTSKIAKKNLIGGEVEEKMSEEKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN
Homology
BLAST of ClCG02G002480 vs. NCBI nr
Match: XP_038888333.1 (glycine-rich protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-20
Identity = 77/167 (46.11%), Postives = 85/167 (50.90%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSKAFIFLGLLF IVV+ SSEEVT + ARDVKF +EAMMET EVDDV+RHGFGGG A +
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVT-VMARDVKF-EEAMMETGEVDDVERHGFGGGHARN 60

Query: 61  VANNVCLNRCAHGCCSCVRGRCISVVGECGCCIGGACSRRTSKIAKKNLIGGEVEEKMSE 120
           +A   CL+ C HGCC C RGRCI                                     
Sbjct: 61  LAE--CLHGCNHGCCECFRGRCI------------------------------------- 99

Query: 121 EKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN 168
                                      RC S AGEAVD +PQAKPNN
Sbjct: 121 ---------------------------RCCSFAGEAVDVKPQAKPNN 99

BLAST of ClCG02G002480 vs. NCBI nr
Match: XP_038888334.1 (glycine-rich protein-like isoform X2 [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-20
Identity = 77/167 (46.11%), Postives = 84/167 (50.30%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           MSSKAFIFLGLLF IVV+ SSEEVT + ARDVKF  EAMMET EVDDV+RHGFGGG A +
Sbjct: 1   MSSKAFIFLGLLFAIVVLFSSEEVT-VMARDVKF--EAMMETGEVDDVERHGFGGGHARN 60

Query: 61  VANNVCLNRCAHGCCSCVRGRCISVVGECGCCIGGACSRRTSKIAKKNLIGGEVEEKMSE 120
           +A   CL+ C HGCC C RGRCI                                     
Sbjct: 61  LAE--CLHGCNHGCCECFRGRCI------------------------------------- 98

Query: 121 EKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN 168
                                      RC S AGEAVD +PQAKPNN
Sbjct: 121 ---------------------------RCCSFAGEAVDVKPQAKPNN 98

BLAST of ClCG02G002480 vs. NCBI nr
Match: XP_004144531.1 (glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_020301 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-12
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
          MSSK+FI LGLLF   VVL S E   +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1  MSSKSFILLGLLF--AVVLFSSEAITVTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61 VANNVCLNRCAHGCCSCVRGRCI---SVVGECGCCIG 95
          +A   CL+ C  GCC C RGRCI   S  GE G   G
Sbjct: 61 LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDG 92

BLAST of ClCG02G002480 vs. NCBI nr
Match: XP_038888674.1 (glycine-rich protein-like [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 6.0e-08
Identity = 61/163 (37.42%), Postives = 69/163 (42.33%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETD--EVDDVKRHGFGGGQA 60
           MSSKAFIFLG LFV+VV+LSSEEVTAI A D+K +++AMMET+    +DVKR    G   
Sbjct: 1   MSSKAFIFLGFLFVVVVLLSSEEVTAI-ADDLKSVEKAMMETNGGGFEDVKRRFRRGHHG 60

Query: 61  ISVANNVCLNRCAHGCCSCVRGRCISVVGECGCCIGGACSRRTSKIAKKNLIGGEVEEKM 120
                      C HGCC                                           
Sbjct: 61  --------HRHCHHGCCG------------------------------------------ 91

Query: 121 SEEKWSEKGKFSEDTLDSGCCHHHDGGCSRCRSSAGEAVDAEP 162
                                HHH GGCSRC S AGEAVDAEP
Sbjct: 121 ---------------------HHHLGGCSRCCSFAGEAVDAEP 91

BLAST of ClCG02G002480 vs. NCBI nr
Match: KAE8645721.1 (hypothetical protein Csa_020383 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
          M+SKAFI LGLLF  V++    EVTA+TA +     EA  +TDE++DVK H  GG  A S
Sbjct: 1  MNSKAFILLGLLFAAVIL----EVTAVTATNDIKSNEAFKQTDEINDVKHHDLGGEDA-S 60

Query: 61 VANNVCLNRCAHGCCSCVRGRCISVVGECGCC 93
          +A   C + C  GCC C  G C+       CC
Sbjct: 61 LAQ--CHHHCHKGCCKCSHGHCVK------CC 79

BLAST of ClCG02G002480 vs. ExPASy TrEMBL
Match: A0A0A0K5A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.7e-13
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
          MSSK+FI LGLLF   VVL S E   +TARD K +KEA MET EVD+V+RH +GG  + +
Sbjct: 1  MSSKSFILLGLLF--AVVLFSSEAITVTARDAK-LKEATMETGEVDNVERHSYGGAHSRN 60

Query: 61 VANNVCLNRCAHGCCSCVRGRCI---SVVGECGCCIG 95
          +A   CL+ C  GCC C RGRCI   S  GE G   G
Sbjct: 61 LAE--CLHGCNRGCCECFRGRCIRCCSFAGEAGIVDG 92

BLAST of ClCG02G002480 vs. ExPASy TrEMBL
Match: A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 60/168 (35.71%), Postives = 76/168 (45.24%), Query Frame = 0

Query: 1   MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDEVDDVKRHGFGGGQAIS 60
           M+SKAFI LGLLF +VV+LSS+    +TARD+K   E +METD V+D K   +  G    
Sbjct: 1   MNSKAFILLGLLFAVVVLLSSD----VTARDLK--GETVMETDGVEDAKDRSYDRG---- 60

Query: 61  VANNVCLNRCAHGCCSCVRGRCISVVGECGCCIGGACSRRTSKIAKKNLIGGEVEEKMSE 120
                      HG                    GG   R  S+       G         
Sbjct: 61  -----------HG------------------HYGGGYDRGHSRYGG----GYPGHGGHYG 120

Query: 121 EKWSEKGKFSEDT-LDSGCCHHHDGGCSRCRSSAGEAVDAEPQAKPNN 168
             +  +G++        GCC +H G C RC S AGEAVD EPQAKP+N
Sbjct: 121 GGYPGRGRYGGGRHCHHGCCGYH-GSCGRCCSYAGEAVDVEPQAKPHN 124

BLAST of ClCG02G002480 vs. ExPASy TrEMBL
Match: A0A6J1JMI7 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-05
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMET--DEVDDVKRHGFGGGQA 60
          M+SKAFI LGLLF +V++LSSEE TA TAR +K ++EA+MET  D ++D KR   GG   
Sbjct: 1  MNSKAFIILGLLFAVVILLSSEEATA-TARGLKSVEEAVMETNGDGIEDDKRRFGGGHHG 60

Query: 61 ISVANNVCLNRCAHGC 75
              +      C HGC
Sbjct: 61 HKHHHRHHHRHCRHGC 75

BLAST of ClCG02G002480 vs. ExPASy TrEMBL
Match: A0A6J1ESD5 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMET--DEVDDVKRHGFGGGQA 60
          M+SKAFI LGLLF IV++LSSEE +A TAR +K ++EA+MET  D ++D KR  FGGG  
Sbjct: 1  MNSKAFIILGLLFTIVILLSSEEASA-TARGLKSVEEAVMETNGDGIEDDKRR-FGGGHH 60

Query: 61 ISVANNVCLNR----CAHGC 75
              ++   +R    C HGC
Sbjct: 61 GHRHHHRHHHRHRHHCRHGC 78

BLAST of ClCG02G002480 vs. ExPASy TrEMBL
Match: A0A6J1C3E0 (glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-04
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1  MSSKAFIFLGLLFVIVVVLSSEEVTAITARDVKFMKEAMMETDE-VDDVKR--HG 53
          MSSK  IFLGLLF +VV+LSSEEVTA TARD+K ++E M ET+  ++D KR  HG
Sbjct: 1  MSSKTLIFLGLLFAVVVLLSSEEVTA-TARDLKSVEEVMTETNNGIEDDKRGHHG 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888333.12.3e-2046.11glycine-rich protein-like isoform X1 [Benincasa hispida][more]
XP_038888334.14.0e-2046.11glycine-rich protein-like isoform X2 [Benincasa hispida][more]
XP_004144531.11.8e-1254.64glycine-rich protein [Cucumis sativus] >KGN43452.1 hypothetical protein Csa_0203... [more]
XP_038888674.16.0e-0837.42glycine-rich protein-like [Benincasa hispida][more]
KAE8645721.11.9e-0645.65hypothetical protein Csa_020383 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K5A18.7e-1354.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037560 PE=4 SV=1[more]
A0A6J1C3T31.8e-0535.71glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1JMI73.0e-0550.00glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4... [more]
A0A6J1ESD51.9e-0451.25glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE... [more]
A0A6J1C3E05.7e-0463.64glycine-rich protein DC7.1-like OS=Momordica charantia OX=3673 GN=LOC111007997 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G002480.2ClCG02G002480.2mRNA