ClCG02G002390 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G002390
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Nucleic acid-binding, OB-fold containing protein
Location	CG_Chr02: 2434944 .. 2437101 (-)
RNA-Seq Expression	ClCG02G002390
Synteny	ClCG02G002390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGAAATTAAATTCTTAGGGTTAGGGTTTTGACCCTCAGGTTCGATTTCATTCTCCATTTTCACGTTGCACTTTCATCGGCAACAGTGTTTCGTTCCGATACTTTGGATTTCCATGGCGACGCCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTGGTGAGTTCCAAAAATGTGAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCTCGCCCTCAACAATTAACTCGAATCTCTGAATGTCTGGTGGGTGATGAGACCGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGGTACGTTTCTCTACTACCTTAGAATGTTTAAAACCTTAAATTTTCTCATATTTTGGACGCATCCATGTACTTGGTGAGATGATTTTGTATATGGTTGCGGAAAACGTTGGATAGAATGGATGGATATTAGTTTCCATTTCCTTGGATGTTTTGCTGTGATTGAGAATTCTTTTGGAACAGTGAGTTATCTTCTTTTTTGTTTGTGAATTTTGTCTTTGTTCCGCGTGAATTAAGGATTATTCTCTATAGGTTTTTTTAAAACCAGTACTAGAAACTTTTCCTTGATAATTGAGCAGATACTATATAGACTTCAAAAAAAAAAAAAAAAAAAAAGAACTCTCCTTTAAGGGTGTCATCCTGTTATATAATTAGAAAAAGGTGCCCCAACAAAAATTTATTTGAGCCACCCTGGATATTTCGTTCCGTGAATTAGTTTTTTAATGGCTATTTTCTGACATAAATAGAATTTGGATGTTGAGATAATTGTATAACAAGGAGTGTTTTCACAATCGATCATTGAGATTCAAGAACACTTGAAAATGGCTTTAACAAGGTCTGGAATAGAAATTCTTTTTGGGCAACACACTTGGGTCTTTTTGGATTGACTCTCTAAATGCTTAAAATTGATTTTTTAATAAACACTCAGAAACACTTTTTTAAACACCTAGAGAATTGACTCTTATATGCAATAAAGGTGCAAAGAGAAGTACATTGTGGAAAACAGAATGCAAAGAATTATTTTAGGATTGGATATCTTTCCTATTAGCTCGTGAAAGGATCCTTAAGGGCAGTTAGTGTGTGAGTTTTTTTGGTGTGTGACAGAATGCAAAGAATTATTTTAGGATTGGATATCTTTCCTTTTAGCTCTTGAAAGGATCCTTAAGGACAGTTAGTGTGTGAGTTTTTTTTGGTCTTTAGTGTGTGAGTGTTTTTGGTCTGTGAGAGTGATTTTACTGGTCAGGATAGTTCTTCTTTTACGTTCATCTCTTTTAAATCAGGACTGTTGAGATGGCGGATTGAGGTTTGTGGGTGTAGACATATTTTCGTCTCCCTGTGAATGTTGCTTTTGATTTGAAATCTGTTGTCAATTTAACTGTGTAGCAGTTTCTTTATCTATTGCCTTGAATCCAGCGATTAATATCTTTTGTGTCTGCTTGGTATTAAGAACCTATTGCTGTGTGTCGTGCATATCATAGGTGGTGGCAGTGATCTTCAATCCTTACTCAACCCCGCCCTCCTCCTAATATATAAATAGTTGATGCTCATGGTGCTCTATTATCTGAACAAATGGTTGTAATTTTTGCAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGGTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCGGAACCAGCCAACTTCGAGGTTAAAGAGGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGAGATCAAATTATGCAATGTTAATTATCATGGATTTCCTTTCCTATTGTGTGGTGGACTGCTATTTATAACTGGTATACAGTTTCTATATGGCAACACAAATCTTGCTGAGGGTAATATAAGTTGATTATTGCTGTGCCTACTAACTTCTACATGCTTAATTTGGATCTGATGTGATTAAGATCTGGGAAGGCAGAGTGCAAATGTTACTTTCTCGTCTTATTATTTGGAAAAGTAAATAGAAGGTTTTACCAATGTTCCTTCGTTTTGGTGCCCTATTTATATAAATATTGTGATATTCAG

mRNA sequence

CGCGAAATTAAATTCTTAGGGTTAGGGTTTTGACCCTCAGGTTCGATTTCATTCTCCATTTTCACGTTGCACTTTCATCGGCAACAGTGTTTCGTTCCGATACTTTGGATTTCCATGGCGACGCCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTGGTGAGTTCCAAAAATGTGAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCTCGCCCTCAACAATTAACTCGAATCTCTGAATGTCTGGTGGGTGATGAGACCGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGGTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCGGAACCAGCCAACTTCGAGGTTAAAGAGGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGAGATCAAATTATGCAATGTTAATTATCATGGATTTCCTTTCCTATTGTGTGGTGGACTGCTATTTATAACTGGTATACAGTTTCTATATGGCAACACAAATCTTGCTGAGGGTAATATAAGTTGATTATTGCTGTGCCTACTAACTTCTACATGCTTAATTTGGATCTGATGTGATTAAGATCTGGGAAGGCAGAGTGCAAATGTTACTTTCTCGTCTTATTATTTGGAAAAGTAAATAGAAGGTTTTACCAATGTTCCTTCGTTTTGGTGCCCTATTTATATAAATATTGTGATATTCAG

Coding sequence (CDS)

ATGGCGACGCCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTGGTGAGTTCCAAAAATGTGAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCTCGCCCTCAACAATTAACTCGAATCTCTGAATGTCTGGTGGGTGATGAGACCGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGGTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCGGAACCAGCCAACTTCGAGGTTAAAGAGGACAACAATCTCTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA

Protein sequence

MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE

Homology

[Close]

BLAST of ClCG02G002390 vs. NCBI nr
Match: XP_038887250.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. NCBI nr
Match: XP_008455497.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 uncharacterized protein E6C27_scaffold430G00240 [Cucumis melo var. makuwa] >TYK21622.1 uncharacterized protein E5676_scaffold150G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 280.8 bits (717), Expect = 6.7e-72
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. NCBI nr
Match: XP_004144523.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical protein Csa_020344 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. NCBI nr
Match: XP_022136009.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 139/145 (95.86%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. NCBI nr
Match: XP_022988994.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7022832.1 hypothetical protein SDJN02_16568 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.6 bits (693), Expect = 4.1e-69
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-46
Identity = 92/133 (69.17%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 11  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGD 70
           KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 71  ETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKED 130
           ETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGR+E    A+F VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 131 NNLSLVEYELVNV 144
           NNLSLVEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149

[Close]

BLAST of ClCG02G002390 vs. ExPASy Swiss-Prot
Match: Q97W73 (Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=ssb PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.1e-04
Identity = 32/109 (29.36%), Postives = 46/109 (42.20%), Query Frame = 0


Query: 18  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIV 77
           KV  LKP      +TV+V+ +   + +  K G  T           ISE +VGDETG + 
Sbjct: 4   KVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRT-----------ISEAIVGDETGRVK 63

Query: 78  FTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANF 126
            T        +K G  V + NA    FKG ++L      ++  A    F
Sbjct: 64  LTLWGKHAGSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGF 101

[Close]

BLAST of ClCG02G002390 vs. ExPASy TrEMBL
Match: A0A5A7UWS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00200 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.2e-72
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. ExPASy TrEMBL
Match: A0A1S3C119 (uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.2e-72
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. ExPASy TrEMBL
Match: A0A0A0K1C6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. ExPASy TrEMBL
Match: A0A6J1C327 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111007815 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.7e-70
Identity = 139/145 (95.86%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. ExPASy TrEMBL
Match: A0A6J1JN47 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111486189 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 137/145 (94.48%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EPANFEVKEDNNLSLVEYELVNVEE 146
           EPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of ClCG02G002390 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-47
Identity = 92/133 (69.17%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 11  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGD 70
           KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 71  ETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKED 130
           ETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGR+E    A+F VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 131 NNLSLVEYELVNV 144
           NNLSLVEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149

[Close]

BLAST of ClCG02G002390 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 185.3 bits (469), Expect = 3.6e-47
Identity = 98/135 (72.59%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 11  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGD 70
           K+KPVFVKV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGD
Sbjct: 52  KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP--QKPGAASSSHLRP---ARISECLVGD 111

Query: 71  ETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKED 130
           ET  I+FTARNDQV++MKPG TV LRNAKIDMFKGSMRLAVDKWGR+E  EPA+  VKED
Sbjct: 112 ETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKED 171

Query: 131 NNLSLVEYELVNVEE 146
           NNLSLVEYELVNV E
Sbjct: 172 NNLSLVEYELVNVVE 181

[Close]

BLAST of ClCG02G002390 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 178.7 bits (452), Expect = 3.3e-45
Identity = 93/134 (69.40%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 12  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDE 71
           +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDE
Sbjct: 10  KKPAFTKVDQLRPGTSGHNVNVKIVST---KMVLQKGRADGPQARQ---LRISECIVGDE 69

Query: 72  TGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKEDN 131
           TG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAVDKWGRVEV EPA+F+VKED 
Sbjct: 70  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 129

Query: 132 NLSLVEYELVNVEE 146
           N+SL+EYELVNV E
Sbjct: 130 NMSLIEYELVNVVE 137

[Close]

BLAST of ClCG02G002390 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-43
Identity = 93/136 (68.38%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 10  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVG 69
           A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVG
Sbjct: 7   ALRKPVFTKVNELRPGTNGHSLNVKVVNTK--MVMQRGGGRPMGPQSRQM--RIAECLVG 66

Query: 70  DETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA-EPANFEVK 129
           DETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGRVEVA EP +  VK
Sbjct: 67  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 126

Query: 130 EDNNLSLVEYELVNVE 145
           +DNNLSL+EYELV+VE
Sbjct: 127 DDNNLSLIEYELVSVE 138

[Close]

BLAST of ClCG02G002390 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-43
Identity = 93/136 (68.38%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 10  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVG 69
           A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVG
Sbjct: 21  ALRKPVFTKVNELRPGTNGHSLNVKVVNTK--MVMQRGGGRPMGPQSRQM--RIAECLVG 80

Query: 70  DETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA-EPANFEVK 129
           DETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGRVEVA EP +  VK
Sbjct: 81  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 140

Query: 130 EDNNLSLVEYELVNVE 145
           +DNNLSL+EYELV+VE
Sbjct: 141 DDNNLSLIEYELVSVE 152

The following BLAST results are available for this feature:

BLAST of ClCG02G002390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887250.1	2.3e-72	100.00	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_008455497.1	6.7e-72	99.31	PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 unchar...	[more]
XP_004144523.1	3.3e-71	97.93	uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical pro...	[more]
XP_022136009.1	1.4e-69	95.86	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_022988994.1	4.1e-69	94.48	uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 unchar...	[more]

BLAST of ClCG02G002390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	2.2e-46	69.17	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]
Q97W73	8.1e-04	29.36	Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain AT...	[more]

BLAST of ClCG02G002390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWS4	3.2e-72	99.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C119	3.2e-72	99.31	uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 S...	[more]
A0A0A0K1C6	1.6e-71	97.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1	[more]
A0A6J1C327	6.7e-70	95.86	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JN47	2.0e-69	94.48	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114861...	[more]

BLAST of ClCG02G002390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28440.1	1.6e-47	69.17	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	3.6e-47	72.59	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	3.3e-45	69.40	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	1.8e-43	68.38	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	1.8e-43	68.38	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 26..135 e-value: 2.8E-43 score: 148.4
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 6..144
None	No IPR available	PANTHER	PTHR31472:SF13	EXPRESSED PROTEIN	coord: 6..144
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 61..119 e-value: 8.84295E-17 score: 68.4185
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G002390.1	ClCG02G002390.1	mRNA