ClCG02G002080 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G002080
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein of unknown function (DUF1068)
Location	CG_Chr02: 2145260 .. 2145532 (+)
RNA-Seq Expression	ClCG02G002080
Synteny	ClCG02G002080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTCAACCCAGTTCTTGCAATCCTTCACTCATCAAGTTCGGATTGGCTTTGATCGCCATCTCCATTGCCGGTTACATTATCGGCCCTCCTCTCTATTGGCACTTCAAGGAAGGTTTAGCCGTCGTTAGCCACTCTTCTTCTTCCTCATGCCCTCCTTGTTTCTGCGACTGCCCTTCTCAGCCTGTCATCTCTATTCCCGAAGGTATCTCTTTATTTCTTCTTTCTTATTGCTCAGATCCGTTTAGATCTCTTTTGGGGTTCCCTTAA

mRNA sequence

ATGGCAATTCAACCCAGTTCTTGCAATCCTTCACTCATCAAGTTCGGATTGGCTTTGATCGCCATCTCCATTGCCGGTTACATTATCGGCCCTCCTCTCTATTGGCACTTCAAGGAAGGTTTAGCCGTCGTTAGCCACTCTTCTTCTTCCTCATGCCCTCCTTGTTTCTGCGACTGCCCTTCTCAGCCTGTCATCTCTATTCCCGAAGGTATCTCTTTATTTCTTCTTTCTTATTGCTCAGATCCGTTTAGATCTCTTTTGGGGTTCCCTTAA

Coding sequence (CDS)

ATGGCAATTCAACCCAGTTCTTGCAATCCTTCACTCATCAAGTTCGGATTGGCTTTGATCGCCATCTCCATTGCCGGTTACATTATCGGCCCTCCTCTCTATTGGCACTTCAAGGAAGGTTTAGCCGTCGTTAGCCACTCTTCTTCTTCCTCATGCCCTCCTTGTTTCTGCGACTGCCCTTCTCAGCCTGTCATCTCTATTCCCGAAGGTATCTCTTTATTTCTTCTTTCTTATTGCTCAGATCCGTTTAGATCTCTTTTGGGGTTCCCTTAA

Protein sequence

MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGISLFLLSYCSDPFRSLLGFP

Homology

[Close]

BLAST of ClCG02G002080 vs. NCBI nr
Match: KAA0040228.1 (uncharacterized protein E6C27_scaffold888G00110 [Cucumis melo var. makuwa] >TYK07120.1 uncharacterized protein E5676_scaffold13G004410 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 2.6e-34
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPEGISLFLLSYCS---DPF 84
          PSQPVISIPEGISLFLLSY     DPF
Sbjct: 61 PSQPVISIPEGISLFLLSYSQIRLDPF 87

[Close]

BLAST of ClCG02G002080 vs. NCBI nr
Match: XP_038888598.1 (uncharacterized protein LOC120078397 [Benincasa hispida])

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCP 60
          MAIQ SSCNPSLIKFGLALIAISI GYI+GPPLYWHFKEGLAVVSHSSSSSCPPCFCDCP
Sbjct: 1  MAIQHSSCNPSLIKFGLALIAISITGYILGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCP 60

Query: 61 SQPVISIPE 70
          SQPVISIPE
Sbjct: 61 SQPVISIPE 69

[Close]

BLAST of ClCG02G002080 vs. NCBI nr
Match: XP_008455457.1 (PREDICTED: uncharacterized protein LOC103495614 isoform X1 [Cucumis melo] >XP_016901761.1 PREDICTED: uncharacterized protein LOC103495614 isoform X2 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 9.7e-29
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQPVISIPE
Sbjct: 61 PSQPVISIPE 70

[Close]

BLAST of ClCG02G002080 vs. NCBI nr
Match: XP_004144504.1 (uncharacterized protein LOC101202853 isoform X1 [Cucumis sativus] >XP_011658696.1 uncharacterized protein LOC101202853 isoform X2 [Cucumis sativus] >KGN43503.1 hypothetical protein Csa_020577 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQPSSCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVV+H SSSSSCPPCFCDC
Sbjct: 1  MAIQPSSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVTHSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PS PVISIPE
Sbjct: 61 PSHPVISIPE 70

[Close]

BLAST of ClCG02G002080 vs. NCBI nr
Match: KAG7011900.1 (hypothetical protein SDJN02_26807, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQ SSCNPSLIKFGLALIA+SIAGYI+GPPLYWHFKEGLAVV+  SSSSSCPPCFCDC
Sbjct: 1  MAIQASSCNPSLIKFGLALIALSIAGYILGPPLYWHFKEGLAVVTRSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQP+I+IP+
Sbjct: 61 PSQPLITIPQ 70

[Close]

BLAST of ClCG02G002080 vs. ExPASy TrEMBL
Match: A0A5D3C708 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004410 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPEGISLFLLSYCS---DPF 84
          PSQPVISIPEGISLFLLSY     DPF
Sbjct: 61 PSQPVISIPEGISLFLLSYSQIRLDPF 87

[Close]

BLAST of ClCG02G002080 vs. ExPASy TrEMBL
Match: A0A1S3C135 (uncharacterized protein LOC103495614 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495614 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.7e-29
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSS-SSSCPPCFCDC 60
          MAIQP+SCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVVSHSS SSSCPPCFCDC
Sbjct: 1  MAIQPTSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVSHSSASSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQPVISIPE
Sbjct: 61 PSQPVISIPE 70

[Close]

BLAST of ClCG02G002080 vs. ExPASy TrEMBL
Match: A0A0A0K245 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041970 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQPSSCNPSLIK GLALIAI+I GYI+GPPLYWHFKEGLAVV+H SSSSSCPPCFCDC
Sbjct: 1  MAIQPSSCNPSLIKLGLALIAITIVGYILGPPLYWHFKEGLAVVTHSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PS PVISIPE
Sbjct: 61 PSHPVISIPE 70

[Close]

BLAST of ClCG02G002080 vs. ExPASy TrEMBL
Match: A0A6J1GK01 (uncharacterized protein LOC111455059 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455059 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQ SSCNPSLIKFGLALIA+SIAGYI+GPPLYWHFKEGLAVV+  SSSSSCPPCFCDC
Sbjct: 1  MAIQASSCNPSLIKFGLALIALSIAGYILGPPLYWHFKEGLAVVTRSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQP+I+IP+
Sbjct: 61 PSQPLITIPQ 70

[Close]

BLAST of ClCG02G002080 vs. ExPASy TrEMBL
Match: A0A6J1HXB7 (uncharacterized protein LOC111468321 OS=Cucurbita maxima OX=3661 GN=LOC111468321 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.8e-27
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAIQPSSCNPSLIKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSH-SSSSSCPPCFCDC 60
          MAIQ SSCNPSLIKFGLALIA+SIAGYI+ PPLYWHFKEGLAVV+  SSSSSCPPCFCDC
Sbjct: 1  MAIQASSCNPSLIKFGLALIALSIAGYILAPPLYWHFKEGLAVVTRSSSSSSCPPCFCDC 60

Query: 61 PSQPVISIPE 70
          PSQP+I+IP+
Sbjct: 61 PSQPLITIPQ 70

[Close]

BLAST of ClCG02G002080 vs. TAIR 10
Match: AT2G32580.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-15
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 13 IKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGIS 72
          +K GLAL+A+S+ GYI+GPPLYWH  E LAV    S++SC  C CDC S P+++IP G+S
Sbjct: 8  LKVGLALLALSMIGYILGPPLYWHLTEALAV----SATSCSACVCDCSSLPLLTIPTGLS 63

[Close]

BLAST of ClCG02G002080 vs. TAIR 10
Match: AT1G05070.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 73.9 bits (180), Expect = 7.2e-14
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 13 IKFGLALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGIS 72
          +K GLAL+ +S+AGYI+GPPLYWH  E LA V   S+SSCP C C+C +   ++IP+ +S
Sbjct: 8  LKIGLALLGLSMAGYILGPPLYWHLTEALAAV---SASSCPSCPCECSTYSAVTIPKELS 67

Query: 73 LFLLSYCS 81
              + C+
Sbjct: 68 NASFADCA 72

[Close]

BLAST of ClCG02G002080 vs. TAIR 10
Match: AT4G04360.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-12
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 19 LIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQPVISIPEGIS 73
          ++ + I  YI GP LYWH  E +A   H   SSCPPC CDC SQP++SIP+G+S
Sbjct: 15 VMGLCIVAYIAGPSLYWHLNETIADSLH---SSCPPCVCDCSSQPLLSIPDGLS 65

[Close]

BLAST of ClCG02G002080 vs. TAIR 10
Match: AT4G30996.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-06
Identity = 24/64 (37.50%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 17 LALIAISIAGYIIGPPLYWHFKEGLAVVSHSSSSSCPPCFCDCPSQ-PVISIPEGISLFL 76
          L + A+  A  + GP LYW F +G  V S  ++S CPPC CDCP    ++ I  G++   
Sbjct: 12 LVIFAVVSALVVCGPALYWKFNKGF-VGSTRANSLCPPCVCDCPPPLSLLQIAPGLANLS 71

Query: 77 LSYC 80
          ++ C
Sbjct: 72 ITDC 74

The following BLAST results are available for this feature:

BLAST of ClCG02G002080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040228.1	2.6e-34	87.36	uncharacterized protein E6C27_scaffold888G00110 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_038888598.1	1.8e-30	95.65	uncharacterized protein LOC120078397 [Benincasa hispida]	[more]
XP_008455457.1	9.7e-29	91.43	PREDICTED: uncharacterized protein LOC103495614 isoform X1 [Cucumis melo] >XP_01...	[more]
XP_004144504.1	3.7e-28	90.00	uncharacterized protein LOC101202853 isoform X1 [Cucumis sativus] >XP_011658696....	[more]
KAG7011900.1	4.1e-27	87.14	hypothetical protein SDJN02_26807, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of ClCG02G002080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G002080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C708	1.3e-34	87.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C135	4.7e-29	91.43	uncharacterized protein LOC103495614 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0K245	1.8e-28	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041970 PE=4 SV=1	[more]
A0A6J1GK01	2.0e-27	87.14	uncharacterized protein LOC111455059 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HXB7	9.8e-27	85.71	uncharacterized protein LOC111468321 OS=Cucurbita maxima OX=3661 GN=LOC111468321...	[more]

BLAST of ClCG02G002080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32580.1	8.5e-15	56.67	Protein of unknown function (DUF1068)	[more]
AT1G05070.1	7.2e-14	48.53	Protein of unknown function (DUF1068)	[more]
AT4G04360.1	5.1e-12	53.70	Protein of unknown function (DUF1068)	[more]
AT4G30996.1	4.2e-06	37.50	Protein of unknown function (DUF1068)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010471	Protein of unknown function DUF1068	PFAM	PF06364	DUF1068	coord: 11..80 e-value: 1.6E-21 score: 76.9
None	No IPR available	PANTHER	PTHR32254	EXPRESSED PROTEIN	coord: 6..79
None	No IPR available	PANTHER	PTHR32254:SF16	SUBFAMILY NOT NAMED	coord: 6..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G002080.2	ClCG02G002080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane